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ATCC10864_007784-T1, ATCC10864_007784-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_007784-T1
Unique NameATCC10864_007784-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000184:1322045..1323000+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_007784-T1 ID=ATCC10864_007784-T1|Name=ATCC10864_007784-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=956bp|location=Sequence derived from alignment at MCQH01000184:1322045..1323000+ (Aspergillus niger ATCC 10864)
ATGGCATCCACCTCCGGGGTAGGGTCGTATTCGAACCCTCTGAAGAAATT
CAAGTATGTCCCGCCTGCAGCATAGCTAGCTTTCGGCTTTCCTTAATGTG
CGGCTAATCGAATTGCAGGCTGGTTTTCTTGGGCGAGCAGAGTGGTACGG
ATATCTTCTGCGACGATACTCCAATCATTGGCGCCACCCGGTCTCTGACA
TCTGCCTTACAGTTGGAAAAACCTCATTGATCACACGGTTCATGTACGAT
TCATTCGACAACACGTACCAAGCTACCATTGGAATCGATTTCTTGTCAAA
GGTATACTACGCCTAGTCGACTGCTTGTGCCCTGCATTAGCAGGCCCTCA
CCGAGCCATTCTCACACGGTCTCATGGTTCCCAATACGCTCGCGCTGCTG
CAAAAAGCTAATTCGCATCGCTCGTCTTAGACTATGTACCTGGAAGACAG
AACTGTGCGCCTTCAACTTTGGGACACAGCTGGTCAAGAACGTTTCCGAT
CTTTGATTCCTTCCTACATCCGTGACTCCAGTGTCGCTGTGGTGGTCTAC
GATATCTCCAACGCCAAGTCTTTCCAGAACACACGCAAATGGATCGACGA
TGTACGGGGAGAACGCGGTAACGATGTCATCATCGTCCTGGTGGGCAACA
AGACCGATCTGAACGACAAGCGCGAGGTCACGACGGCGCAGGGCGAGGAG
GAGGCGAAGAAGAACGGCTTGATGTTCATTGAGACCAGTGCTAAAGTCGG
CCACAATGTGAAGCAGCTTTTCAGGAGAATTGCGCAAGCCCTACCGGGCA
TGGAGGGTGAAGCCAACCGGGGAGACAACCAGAGTCCGTTATCCTTTCCC
CGCCCATGGCTCGAATTACACGGGATGAGTACTGACAACTCTTACAGTGA
TCGATGTCAACATCACTCCGAAAGAGACCACGACCAACGACGGATGCGCC
TGCTAG
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Coding sequence (CDS) from alignment at MCQH01000184:1322045..1323000+

>ATCC10864_007784-T1 ID=ATCC10864_007784-T1|Name=ATCC10864_007784-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=3150bp|location=Sequence derived from alignment at MCQH01000184:1322045..1323000+ (Aspergillus niger ATCC 10864)
ATGGCATCCACCTCCGGGGTAGGGTCGTATTCGAACCCTCTGAAGAAATT
CAAGCTGGTTTTCTTGGGCGAGCAGAGTGTTGGAAAAACCTCATTGATCA
CACGGTTCATGTACGATTCATTCGACAACACGTACCAAGCTACCATTGGA
ATCGATTTCTTGTCAAAGACTATGTACCTGGAAGACAGAACTGTGCGCCT
TCAACTTTGGGACACAGCTGGTCAAGAACGTTTCCGATCTTTGATTCCTT
CCTACATCCGTGACTCCAGTGTCGCTGTGGTGGTCTACGATATCTCCAAC
GCCAAGTCTTTCCAGAACACACGCAAATGGATCGACGATGTACGGGGAGA
ACGCGGTAACGATGTCATCATCGTCCTGGTGGGCAACAAGACCGATCTGA
ACGACAAGCGCGAGGTCACGACGGCGCAGGGCGAGGAGGAGGCGAAGAAG
AACGGCTTGATGTTCATTGAGACCAGTGCTAAAGTCGGCCACAATGTGAA
GCAGCTTTTCAGGAGAATTGCGCAAGCCCTACCGGGCATGGAGGGTGAAG
CCAACCGGGGAGACAACCAGATGATCGATGTCAACATCACTCCGAAAGAG
ACCACGACCAACGACGGATGCGCCTGCTAGATGGCATCCACCTCCGGGGT
AGGGTCGTATTCGAACCCTCTGAAGAAATTCAAGCTGGTTTTCTTGGGCG
AGCAGAGTGTTGGAAAAACCTCATTGATCACACGGTTCATGTACGATTCA
TTCGACAACACGTACCAAGCTACCATTGGAATCGATTTCTTGTCAAAGAC
TATGTACCTGGAAGACAGAACTGTGCGCCTTCAACTTTGGGACACAGCTG
GTCAAGAACGTTTCCGATCTTTGATTCCTTCCTACATCCGTGACTCCAGT
GTCGCTGTGGTGGTCTACGATATCTCCAACGCCAAGTCTTTCCAGAACAC
ACGCAAATGGATCGACGATGTACGGGGAGAACGCGGTAACGATGTCATCA
TCGTCCTGGTGGGCAACAAGACCGATCTGAACGACAAGCGCGAGGTCACG
ACGGCGCAGGGCGAGGAGGAGGCGAAGAAGAACGGCTTGATGTTCATTGA
GACCAGTGCTAAAGTCGGCCACAATGTGAAGCAGCTTTTCAGGAGAATTG
CGCAAGCCCTACCGGGCATGGAGGGTGAAGCCAACCGGGGAGACAACCAG
ATGATCGATGTCAACATCACTCCGAAAGAGACCACGACCAACGACGGATG
CGCCTGCTAGATGGCATCCACCTCCGGGGTAGGGTCGTATTCGAACCCTC
TGAAGAAATTCAAGCTGGTTTTCTTGGGCGAGCAGAGTGTTGGAAAAACC
TCATTGATCACACGGTTCATGTACGATTCATTCGACAACACGTACCAAGC
TACCATTGGAATCGATTTCTTGTCAAAGACTATGTACCTGGAAGACAGAA
CTGTGCGCCTTCAACTTTGGGACACAGCTGGTCAAGAACGTTTCCGATCT
TTGATTCCTTCCTACATCCGTGACTCCAGTGTCGCTGTGGTGGTCTACGA
TATCTCCAACGCCAAGTCTTTCCAGAACACACGCAAATGGATCGACGATG
TACGGGGAGAACGCGGTAACGATGTCATCATCGTCCTGGTGGGCAACAAG
ACCGATCTGAACGACAAGCGCGAGGTCACGACGGCGCAGGGCGAGGAGGA
GGCGAAGAAGAACGGCTTGATGTTCATTGAGACCAGTGCTAAAGTCGGCC
ACAATGTGAAGCAGCTTTTCAGGAGAATTGCGCAAGCCCTACCGGGCATG
GAGGGTGAAGCCAACCGGGGAGACAACCAGATGATCGATGTCAACATCAC
TCCGAAAGAGACCACGACCAACGACGGATGCGCCTGCTAGATGGCATCCA
CCTCCGGGGTAGGGTCGTATTCGAACCCTCTGAAGAAATTCAAGCTGGTT
TTCTTGGGCGAGCAGAGTGTTGGAAAAACCTCATTGATCACACGGTTCAT
GTACGATTCATTCGACAACACGTACCAAGCTACCATTGGAATCGATTTCT
TGTCAAAGACTATGTACCTGGAAGACAGAACTGTGCGCCTTCAACTTTGG
GACACAGCTGGTCAAGAACGTTTCCGATCTTTGATTCCTTCCTACATCCG
TGACTCCAGTGTCGCTGTGGTGGTCTACGATATCTCCAACGCCAAGTCTT
TCCAGAACACACGCAAATGGATCGACGATGTACGGGGAGAACGCGGTAAC
GATGTCATCATCGTCCTGGTGGGCAACAAGACCGATCTGAACGACAAGCG
CGAGGTCACGACGGCGCAGGGCGAGGAGGAGGCGAAGAAGAACGGCTTGA
TGTTCATTGAGACCAGTGCTAAAGTCGGCCACAATGTGAAGCAGCTTTTC
AGGAGAATTGCGCAAGCCCTACCGGGCATGGAGGGTGAAGCCAACCGGGG
AGACAACCAGATGATCGATGTCAACATCACTCCGAAAGAGACCACGACCA
ACGACGGATGCGCCTGCTAGATGGCATCCACCTCCGGGGTAGGGTCGTAT
TCGAACCCTCTGAAGAAATTCAAGCTGGTTTTCTTGGGCGAGCAGAGTGT
TGGAAAAACCTCATTGATCACACGGTTCATGTACGATTCATTCGACAACA
CGTACCAAGCTACCATTGGAATCGATTTCTTGTCAAAGACTATGTACCTG
GAAGACAGAACTGTGCGCCTTCAACTTTGGGACACAGCTGGTCAAGAACG
TTTCCGATCTTTGATTCCTTCCTACATCCGTGACTCCAGTGTCGCTGTGG
TGGTCTACGATATCTCCAACGCCAAGTCTTTCCAGAACACACGCAAATGG
ATCGACGATGTACGGGGAGAACGCGGTAACGATGTCATCATCGTCCTGGT
GGGCAACAAGACCGATCTGAACGACAAGCGCGAGGTCACGACGGCGCAGG
GCGAGGAGGAGGCGAAGAAGAACGGCTTGATGTTCATTGAGACCAGTGCT
AAAGTCGGCCACAATGTGAAGCAGCTTTTCAGGAGAATTGCGCAAGCCCT
ACCGGGCATGGAGGGTGAAGCCAACCGGGGAGACAACCAGATGATCGATG
TCAACATCACTCCGAAAGAGACCACGACCAACGACGGATGCGCCTGCTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003924GTPase activity
GO:0005525GTP binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RAB6AATCC10864_007784Aspergillus niger ATCC 10864gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_007784-T1ATCC10864_007784-T1-proteinAspergillus niger ATCC 10864polypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_007784-T1.exon1ATCC10864_007784-T1.exon1Aspergillus niger ATCC 10864exon
ATCC10864_007784-T1.exon2ATCC10864_007784-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_007784-T1.exon3ATCC10864_007784-T1.exon3Aspergillus niger ATCC 10864exon
ATCC10864_007784-T1.exon4ATCC10864_007784-T1.exon4Aspergillus niger ATCC 10864exon
ATCC10864_007784-T1.exon5ATCC10864_007784-T1.exon5Aspergillus niger ATCC 10864exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_007784-T1.cdsATCC10864_007784-T1.cdsAspergillus niger ATCC 10864CDS


Cross References
External references for this mRNA
DatabaseAccession
PFAMPF09439
InterProIPR027417
PFAMPF00025
PFAMPF00071
PFAMPF04670
InterProIPR001806
PFAMPF08477
PFAMPF01926
InterProIPR005225
Properties
Property NameValue
NoteBUSCO:EOG09264JHE
ProductRas- protein Rab-6A
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000184supercontigMCQH01000184:1322045..1323000 +
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