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ATCC10864_007809-T1, ATCC10864_007809-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_007809-T1
Unique NameATCC10864_007809-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000184:1396752..1397771+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_007809-T1 ID=ATCC10864_007809-T1|Name=ATCC10864_007809-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1020bp|location=Sequence derived from alignment at MCQH01000184:1396752..1397771+ (Aspergillus niger ATCC 10864)
ATGGCTGCTAATTACTGGGCATCAACTCAACGCCGACACTGGCTCTTCAC
GAGAGAGAAGTTGGCAGAGATTCGGGAGAACTTTAGAGAGCGGGACATGG
TCGCTCATAGTCAGTTTCCTCTGCCGGATCAGAGGTTGCTGAACATCTAC
TTCAGTCAACGTAAGATAACATAGTATATATCCTAAATCGGTGAGCATCC
GAGCTCACCAGACCAACAGAACTCATCAAATTGGGGAAACGGATGTCTAC
TCGACAACAAGCACTTGCGACAGCGCAAGTCTATGTCAAGAGGTTCTACA
CCAAGAACGAGATTAGACATACAAACCCGTATCTTGTCGTCACAACTGCC
TTCTATCTGGCCTGTAAAATGGAAGAATGCCCTCAACATATTCGTTTTGT
CGTCGGAGAGGCTAGAGGTCTCTGGCCAGGTACGGAACACTCGCGTTAAT
GCACTTCGTGCGCTTCCCGCTGACGTGGCTACAGAGTTTATTGCCCCAGA
TGTTTCAAAACTAGGAGAATGCGAATTCTCTTTGATATCGGAAATGAACT
CTCAGCTTATTGTGCACCACCCATATCGAACTTTATCAGAACTCCAACCC
GAGCTGTCACTTACGTCAGATGAAGTTGCTCTTGCATGGTCTGTAATCAA
CGACCACTATCTCACCGACTTGCCGCTCTTATATCCGCCTCACGTCATCG
CTGTCATGGCGATTATCGTCGCCGTGGTCTTCAAGCCCAGCCAAACGAGC
TTTCACGGGTCAGCAGCGCCACTGGCCAGCGCGATGCGCGATGGGGGGAT
GAACATCCTTGGAGCATTGGGAGATAAGGGCGGCAACGGCCCTCCTCCCC
GCATTCAACGACTTATAGGATGGCTTGCCGAGAGCGAGGTGGACATCAAG
GCAGTCATAGAGTGTACTCAAGAGCTGGTGTCGCTTTACGAGGTCTGGGA
GCAATACAGCGAAAAGCATTGCAAGGAGCTTCTTGGACGGATGGTGAAGA
GCAAGAACCTGGACAAATGA
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Coding sequence (CDS) from alignment at MCQH01000184:1396752..1397771+

>ATCC10864_007809-T1 ID=ATCC10864_007809-T1|Name=ATCC10864_007809-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=2718bp|location=Sequence derived from alignment at MCQH01000184:1396752..1397771+ (Aspergillus niger ATCC 10864)
ATGGCTGCTAATTACTGGGCATCAACTCAACGCCGACACTGGCTCTTCAC
GAGAGAGAAGTTGGCAGAGATTCGGGAGAACTTTAGAGAGCGGGACATGG
TCGCTCATAGTCAGTTTCCTCTGCCGGATCAGAGGTTGCTGAACATCTAC
TTCAGTCAACAACTCATCAAATTGGGGAAACGGATGTCTACTCGACAACA
AGCACTTGCGACAGCGCAAGTCTATGTCAAGAGGTTCTACACCAAGAACG
AGATTAGACATACAAACCCGTATCTTGTCGTCACAACTGCCTTCTATCTG
GCCTGTAAAATGGAAGAATGCCCTCAACATATTCGTTTTGTCGTCGGAGA
GGCTAGAGGTCTCTGGCCAGAGTTTATTGCCCCAGATGTTTCAAAACTAG
GAGAATGCGAATTCTCTTTGATATCGGAAATGAACTCTCAGCTTATTGTG
CACCACCCATATCGAACTTTATCAGAACTCCAACCCGAGCTGTCACTTAC
GTCAGATGAAGTTGCTCTTGCATGGTCTGTAATCAACGACCACTATCTCA
CCGACTTGCCGCTCTTATATCCGCCTCACGTCATCGCTGTCATGGCGATT
ATCGTCGCCGTGGTCTTCAAGCCCAGCCAAACGAGCTTTCACGGGTCAGC
AGCGCCACTGGCCAGCGCGATGCGCGATGGGGGGATGAACATCCTTGGAG
CATTGGGAGATAAGGGCGGCAACGGCCCTCCTCCCCGCATTCAACGACTT
ATAGGATGGCTTGCCGAGAGCGAGGTGGACATCAAGGCAGTCATAGAGTG
TACTCAAGAGCTGGTGTCGCTTTACGAGGTCTGGGAGCAATACAGCGAAA
AGCATTGCAAGGAGCTTCTTGGACGGATGGTGAAGAGCAAGAACCTGGAC
AAATGAATGGCTGCTAATTACTGGGCATCAACTCAACGCCGACACTGGCT
CTTCACGAGAGAGAAGTTGGCAGAGATTCGGGAGAACTTTAGAGAGCGGG
ACATGGTCGCTCATAGTCAGTTTCCTCTGCCGGATCAGAGGTTGCTGAAC
ATCTACTTCAGTCAACAACTCATCAAATTGGGGAAACGGATGTCTACTCG
ACAACAAGCACTTGCGACAGCGCAAGTCTATGTCAAGAGGTTCTACACCA
AGAACGAGATTAGACATACAAACCCGTATCTTGTCGTCACAACTGCCTTC
TATCTGGCCTGTAAAATGGAAGAATGCCCTCAACATATTCGTTTTGTCGT
CGGAGAGGCTAGAGGTCTCTGGCCAGAGTTTATTGCCCCAGATGTTTCAA
AACTAGGAGAATGCGAATTCTCTTTGATATCGGAAATGAACTCTCAGCTT
ATTGTGCACCACCCATATCGAACTTTATCAGAACTCCAACCCGAGCTGTC
ACTTACGTCAGATGAAGTTGCTCTTGCATGGTCTGTAATCAACGACCACT
ATCTCACCGACTTGCCGCTCTTATATCCGCCTCACGTCATCGCTGTCATG
GCGATTATCGTCGCCGTGGTCTTCAAGCCCAGCCAAACGAGCTTTCACGG
GTCAGCAGCGCCACTGGCCAGCGCGATGCGCGATGGGGGGATGAACATCC
TTGGAGCATTGGGAGATAAGGGCGGCAACGGCCCTCCTCCCCGCATTCAA
CGACTTATAGGATGGCTTGCCGAGAGCGAGGTGGACATCAAGGCAGTCAT
AGAGTGTACTCAAGAGCTGGTGTCGCTTTACGAGGTCTGGGAGCAATACA
GCGAAAAGCATTGCAAGGAGCTTCTTGGACGGATGGTGAAGAGCAAGAAC
CTGGACAAATGAATGGCTGCTAATTACTGGGCATCAACTCAACGCCGACA
CTGGCTCTTCACGAGAGAGAAGTTGGCAGAGATTCGGGAGAACTTTAGAG
AGCGGGACATGGTCGCTCATAGTCAGTTTCCTCTGCCGGATCAGAGGTTG
CTGAACATCTACTTCAGTCAACAACTCATCAAATTGGGGAAACGGATGTC
TACTCGACAACAAGCACTTGCGACAGCGCAAGTCTATGTCAAGAGGTTCT
ACACCAAGAACGAGATTAGACATACAAACCCGTATCTTGTCGTCACAACT
GCCTTCTATCTGGCCTGTAAAATGGAAGAATGCCCTCAACATATTCGTTT
TGTCGTCGGAGAGGCTAGAGGTCTCTGGCCAGAGTTTATTGCCCCAGATG
TTTCAAAACTAGGAGAATGCGAATTCTCTTTGATATCGGAAATGAACTCT
CAGCTTATTGTGCACCACCCATATCGAACTTTATCAGAACTCCAACCCGA
GCTGTCACTTACGTCAGATGAAGTTGCTCTTGCATGGTCTGTAATCAACG
ACCACTATCTCACCGACTTGCCGCTCTTATATCCGCCTCACGTCATCGCT
GTCATGGCGATTATCGTCGCCGTGGTCTTCAAGCCCAGCCAAACGAGCTT
TCACGGGTCAGCAGCGCCACTGGCCAGCGCGATGCGCGATGGGGGGATGA
ACATCCTTGGAGCATTGGGAGATAAGGGCGGCAACGGCCCTCCTCCCCGC
ATTCAACGACTTATAGGATGGCTTGCCGAGAGCGAGGTGGACATCAAGGC
AGTCATAGAGTGTACTCAAGAGCTGGTGTCGCTTTACGAGGTCTGGGAGC
AATACAGCGAAAAGCATTGCAAGGAGCTTCTTGGACGGATGGTGAAGAGC
AAGAACCTGGACAAATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription by RNA polymerase II
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Molecular Function
TermDefinition
GO:0016538cyclin-dependent protein serine/threonine kinase regulator activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SSN8ATCC10864_007809Aspergillus niger ATCC 10864gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_007809-T1.exon1ATCC10864_007809-T1.exon1Aspergillus niger ATCC 10864exon
ATCC10864_007809-T1.exon2ATCC10864_007809-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_007809-T1.exon3ATCC10864_007809-T1.exon3Aspergillus niger ATCC 10864exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_007809-T1.cdsATCC10864_007809-T1.cdsAspergillus niger ATCC 10864CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_007809-T1ATCC10864_007809-T1-proteinAspergillus niger ATCC 10864polypeptide


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR013763
PFAMPF00134
InterProIPR036915
InterProIPR028367
InterProIPR043198
InterProIPR006671
Properties
Property NameValue
NoteBUSCO:EOG09262K8C
ProductRNA polymerase II holoenzyme cyclin-like subunit
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000184supercontigMCQH01000184:1396752..1397771 +
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