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ATCC10864_008097-T1, ATCC10864_008097-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_008097-T1
Unique NameATCC10864_008097-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000196:123302..124682-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_008097-T1 ID=ATCC10864_008097-T1|Name=ATCC10864_008097-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1381bp|location=Sequence derived from alignment at MCQH01000196:123302..124682- (Aspergillus niger ATCC 10864)
ATGGACCAGACCTTCGACCTCCCCGACTCGACCGATTGGCTTACAACGCC
ACTGTCACTCGTCGCGCCTCTCGAATCCGCCCTCCGTTGCCAGGTCTGTA
AGGACTTCTTCGATAACCCGGTGATTACTTCGTGCAGCCATACATTCTGC
TCACTTTGCATTCGGCGGTGTCTAAGCACAGAAGGCAAATGCCCCGCGTG
CCGCAGCTCGGATCAGGAATTGAAGTTGCGGCGCAACTGGGCTGTTCAGG
AACTTGTTGAGGCGTTCCAGAATGCTAGACCCAATGTTTTAGATCTGGCG
AGGAAGGCTGCTGCGCGGGGGAGTGATACTGAGGAGGGAGAGTCGGAGGA
ACCCGCACCGAAGAAGCGAAAGGTCGAGGCTGTAGATGGGCCTGCTGCGG
AGGGCGTCAGGACTCGATCGCAAACTCGGGGAATTGGCTCTCAGGAAGAT
CCTGTTGCGATTGAGGTGATTGAGGATAGTAATGATGATGAATATGTTCC
AGGTGTGTATGCTCATCGGCACAGTTGCGCCGCATGCTAATCGCCACTGA
AGACGACGGACTGGTCGCGTGCCCAATCTGCAACCGGAGGATGAAGAATG
AAGCGGTGTTTCGACACTTGGATACATGCACTGGAGAGCCCGCGCCGCCC
AAACAAATGAATTTTGGGTAAGATATGTCTTTTGGAGCGTGTCTACATGT
GTGCTTCTAACTCGGAATTATAGATCGTTACAACCCATGCCACAACCGTC
GCAGAGAGCAAAAGACGCCCTGAATAAAACACCAGAACGACTGCCCATTA
TAAACTATTCTCTATTGAAAGATAATGTGCTCCGAAAGAAGTTAAAAGAT
TTGGGTATACCGAACACGGGCCCGAGGCCCCTTCTGCAACGACGTCACAC
AGAGTGGATGAATTTGTGGAATGCCAACTGCGACTCCAAAACGCCAAAGT
CCAAAAGGGAATTGCTGAGAGAACTGGATATCTGGGAACGCACGCAAGGC
GGCCAAGCGCAACTATCAGGGGACGTCACAGATACTGTCATGCGCAAAGA
CTTTGATGCGGCGGCGTGGTCAACGAGTCATGACGATGACTTCAAGCGGC
TCATTGCCAATGCGCGAAAAAAGAGCGAAGCGCAGGTGCGCACCACGATA
CCACAAGAACCTGTAGGCACAAATCAGGCAACCGACCAGCTTGCCAGTCC
GACAACGTATCAGCCTTCGAGTGTGCCTGTTGTTGAGCATACCGAAGCCA
TGCATGCGACGGAAGATGCCCACCCTCCGGAGAAGTTGACTGTAGATGAC
AAAACCGTTATTGTCCCTGAGGTCCAAGCGCAGACACTACAGGGCTCAGT
TGATAGCCAGATGACCAATGCGCAAAATTAA
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Coding sequence (CDS) from alignment at MCQH01000196:123302..124682-

>ATCC10864_008097-T1 ID=ATCC10864_008097-T1|Name=ATCC10864_008097-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=3825bp|location=Sequence derived from alignment at MCQH01000196:123302..124682- (Aspergillus niger ATCC 10864)
ATCGTTACAACCCATGCCACAACCGTCGCAGAGAGCAAAAGACGCCCTGA
ATAAAACACCAGAACGACTGCCCATTATAAACTATTCTCTATTGAAAGAT
AATGTGCTCCGAAAGAAGTTAAAAGATTTGGGTATACCGAACACGGGCCC
GAGGCCCCTTCTGCAACGACGTCACACAGAGTGGATGAATTTGTGGAATG
CCAACTGCGACTCCAAAACGCCAAAGTCCAAAAGGGAATTGCTGAGAGAA
CTGGATATCTGGGAACGCACGCAAGGCGGCCAAGCGCAACTATCAGGGGA
CGTCACAGATACTGTCATGCGCAAAGACTTTGATGCGGCGGCGTGGTCAA
CGAGTCATGACGATGACTTCAAGCGGCTCATTGCCAATGCGCGAAAAAAG
AGCGAAGCGCAGGTGCGCACCACGATACCACAAGAACCTGTAGGCACAAA
TCAGGCAACCGACCAGCTTGCCAGTCCGACAACGTATCAGCCTTCGAGTG
TGCCTGTTGTTGAGCATACCGAAGCCATGCATGCGACGGAAGATGCCCAC
CCTCCGGAGAAGTTGACTGTAGATGACAAAACCGTTATTGTCCCTGAGGT
CCAAGCGCAGACACTACAGGGCTCAGTTGATAGCCAGATGACCAATGCGC
AAAATTAAACGACGGACTGGTCGCGTGCCCAATCTGCAACCGGAGGATGA
AGAATGAAGCGGTGTTTCGACACTTGGATACATGCACTGGAGAGCCCGCG
CCGCCCAAACAAATGAATTTTGGATGGACCAGACCTTCGACCTCCCCGAC
TCGACCGATTGGCTTACAACGCCACTGTCACTCGTCGCGCCTCTCGAATC
CGCCCTCCGTTGCCAGGTCTGTAAGGACTTCTTCGATAACCCGGTGATTA
CTTCGTGCAGCCATACATTCTGCTCACTTTGCATTCGGCGGTGTCTAAGC
ACAGAAGGCAAATGCCCCGCGTGCCGCAGCTCGGATCAGGAATTGAAGTT
GCGGCGCAACTGGGCTGTTCAGGAACTTGTTGAGGCGTTCCAGAATGCTA
GACCCAATGTTTTAGATCTGGCGAGGAAGGCTGCTGCGCGGGGGAGTGAT
ACTGAGGAGGGAGAGTCGGAGGAACCCGCACCGAAGAAGCGAAAGGTCGA
GGCTGTAGATGGGCCTGCTGCGGAGGGCGTCAGGACTCGATCGCAAACTC
GGGGAATTGGCTCTCAGGAAGATCCTGTTGCGATTGAGGTGATTGAGGAT
AGTAATGATGATGAATATGTTCCAGATCGTTACAACCCATGCCACAACCG
TCGCAGAGAGCAAAAGACGCCCTGAATAAAACACCAGAACGACTGCCCAT
TATAAACTATTCTCTATTGAAAGATAATGTGCTCCGAAAGAAGTTAAAAG
ATTTGGGTATACCGAACACGGGCCCGAGGCCCCTTCTGCAACGACGTCAC
ACAGAGTGGATGAATTTGTGGAATGCCAACTGCGACTCCAAAACGCCAAA
GTCCAAAAGGGAATTGCTGAGAGAACTGGATATCTGGGAACGCACGCAAG
GCGGCCAAGCGCAACTATCAGGGGACGTCACAGATACTGTCATGCGCAAA
GACTTTGATGCGGCGGCGTGGTCAACGAGTCATGACGATGACTTCAAGCG
GCTCATTGCCAATGCGCGAAAAAAGAGCGAAGCGCAGGTGCGCACCACGA
TACCACAAGAACCTGTAGGCACAAATCAGGCAACCGACCAGCTTGCCAGT
CCGACAACGTATCAGCCTTCGAGTGTGCCTGTTGTTGAGCATACCGAAGC
CATGCATGCGACGGAAGATGCCCACCCTCCGGAGAAGTTGACTGTAGATG
ACAAAACCGTTATTGTCCCTGAGGTCCAAGCGCAGACACTACAGGGCTCA
GTTGATAGCCAGATGACCAATGCGCAAAATTAAACGACGGACTGGTCGCG
TGCCCAATCTGCAACCGGAGGATGAAGAATGAAGCGGTGTTTCGACACTT
GGATACATGCACTGGAGAGCCCGCGCCGCCCAAACAAATGAATTTTGGAT
GGACCAGACCTTCGACCTCCCCGACTCGACCGATTGGCTTACAACGCCAC
TGTCACTCGTCGCGCCTCTCGAATCCGCCCTCCGTTGCCAGGTCTGTAAG
GACTTCTTCGATAACCCGGTGATTACTTCGTGCAGCCATACATTCTGCTC
ACTTTGCATTCGGCGGTGTCTAAGCACAGAAGGCAAATGCCCCGCGTGCC
GCAGCTCGGATCAGGAATTGAAGTTGCGGCGCAACTGGGCTGTTCAGGAA
CTTGTTGAGGCGTTCCAGAATGCTAGACCCAATGTTTTAGATCTGGCGAG
GAAGGCTGCTGCGCGGGGGAGTGATACTGAGGAGGGAGAGTCGGAGGAAC
CCGCACCGAAGAAGCGAAAGGTCGAGGCTGTAGATGGGCCTGCTGCGGAG
GGCGTCAGGACTCGATCGCAAACTCGGGGAATTGGCTCTCAGGAAGATCC
TGTTGCGATTGAGGTGATTGAGGATAGTAATGATGATGAATATGTTCCAG
ATCGTTACAACCCATGCCACAACCGTCGCAGAGAGCAAAAGACGCCCTGA
ATAAAACACCAGAACGACTGCCCATTATAAACTATTCTCTATTGAAAGAT
AATGTGCTCCGAAAGAAGTTAAAAGATTTGGGTATACCGAACACGGGCCC
GAGGCCCCTTCTGCAACGACGTCACACAGAGTGGATGAATTTGTGGAATG
CCAACTGCGACTCCAAAACGCCAAAGTCCAAAAGGGAATTGCTGAGAGAA
CTGGATATCTGGGAACGCACGCAAGGCGGCCAAGCGCAACTATCAGGGGA
CGTCACAGATACTGTCATGCGCAAAGACTTTGATGCGGCGGCGTGGTCAA
CGAGTCATGACGATGACTTCAAGCGGCTCATTGCCAATGCGCGAAAAAAG
AGCGAAGCGCAGGTGCGCACCACGATACCACAAGAACCTGTAGGCACAAA
TCAGGCAACCGACCAGCTTGCCAGTCCGACAACGTATCAGCCTTCGAGTG
TGCCTGTTGTTGAGCATACCGAAGCCATGCATGCGACGGAAGATGCCCAC
CCTCCGGAGAAGTTGACTGTAGATGACAAAACCGTTATTGTCCCTGAGGT
CCAAGCGCAGACACTACAGGGCTCAGTTGATAGCCAGATGACCAATGCGC
AAAATTAAACGACGGACTGGTCGCGTGCCCAATCTGCAACCGGAGGATGA
AGAATGAAGCGGTGTTTCGACACTTGGATACATGCACTGGAGAGCCCGCG
CCGCCCAAACAAATGAATTTTGGATGGACCAGACCTTCGACCTCCCCGAC
TCGACCGATTGGCTTACAACGCCACTGTCACTCGTCGCGCCTCTCGAATC
CGCCCTCCGTTGCCAGGTCTGTAAGGACTTCTTCGATAACCCGGTGATTA
CTTCGTGCAGCCATACATTCTGCTCACTTTGCATTCGGCGGTGTCTAAGC
ACAGAAGGCAAATGCCCCGCGTGCCGCAGCTCGGATCAGGAATTGAAGTT
GCGGCGCAACTGGGCTGTTCAGGAACTTGTTGAGGCGTTCCAGAATGCTA
GACCCAATGTTTTAGATCTGGCGAGGAAGGCTGCTGCGCGGGGGAGTGAT
ACTGAGGAGGGAGAGTCGGAGGAACCCGCACCGAAGAAGCGAAAGGTCGA
GGCTGTAGATGGGCCTGCTGCGGAGGGCGTCAGGACTCGATCGCAAACTC
GGGGAATTGGCTCTCAGGAAGATCCTGTTGCGATTGAGGTGATTGAGGAT
AGTAATGATGATGAATATGTTCCAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0006513protein monoubiquitination
GO:0006301postreplication repair
Vocabulary: Molecular Function
TermDefinition
GO:0061630ubiquitin protein ligase activity
GO:0003677DNA binding
GO:0003697single-stranded DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RAD18ATCC10864_008097Aspergillus niger ATCC 10864gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_008097-T1ATCC10864_008097-T1-proteinAspergillus niger ATCC 10864polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_008097-T1.cdsATCC10864_008097-T1.cdsAspergillus niger ATCC 10864CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_008097-T1.exon3ATCC10864_008097-T1.exon3Aspergillus niger ATCC 10864exon
ATCC10864_008097-T1.exon2ATCC10864_008097-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_008097-T1.exon1ATCC10864_008097-T1.exon1Aspergillus niger ATCC 10864exon


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR001841
PFAMPF13920
InterProIPR017907
InterProIPR003034
PFAMPF00097
InterProIPR004580
InterProIPR013083
InterProIPR006642
PFAMPF13445
InterProIPR039577
PFAMPF13923
PFAMPF02037
Properties
Property NameValue
ProductE3 ubiquitin-protein ligase rad18
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000196supercontigMCQH01000196:123302..124682 -
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