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ATCC10864_008102-T1, ATCC10864_008102-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_008102-T1
Unique NameATCC10864_008102-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000196:134163..135837+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_008102-T1 ID=ATCC10864_008102-T1|Name=ATCC10864_008102-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1675bp|location=Sequence derived from alignment at MCQH01000196:134163..135837+ (Aspergillus niger ATCC 10864)
ATGTCGATGGACCTGGATGCGCCGGTGCCTTTCGAGGCCATCCCGCAAGA
TCAGATCGCTGCGACGTGAGTTACCCCGCAAATTAAAAGAAAATTTCTCT
ATAAACATACACGAGGGGCAGTATGATCGAGGACTTCAACTAACAAATGT
GCTTAATAGTATCCTTTGTTGCAACTGTGGCGCGCCCATCGATGGAACAA
CATCCGCAGGCGCCCTTTGCCAGGACTGTGTGAAATTGACGGTTGATATC
TCCCAGGGCATCCAGAGAGAGGCAGTTCTCCACTGCTGCAAGGACTGCGA
GCGGTGGCTTCAACCTCCCACCAGCTGGGTTAGTGCTGCGCTCGAATCGA
AGGAACTCCTCGCACACTGCTTGCGCAAGCTCCGCGGCTTGTCCAAGGTT
CGCATTATCGATGCCAGCTTCATCTGGACCGAACCCCACTCGAAGCGTAT
TAAGGTCAAGATCACCATCCAGCAGGAGGCATTCCAGGGCACCATTGTGC
AGCAGACTTTCGAGGTTGAATACGTTGTCGCCTCGCTACAATGCCCTGAC
TGCAAGAAGTCGTTCACTGTCAACACTTGGAACTCCAGCATTCAGCTGCG
CCAGAAGGTGCCTCACAAGCGAACCTTCTTGTACCTTGAGCAAATCATCC
TCAAGCACAACGCTCACCGCGATACAATCAACATCAAGGAGGCCAAGGAC
GGTTTGGATTTCTACTTTGCGCAGAGGAATCATGCGGAGAAGATGGTCGA
GTTCCTCTCCTCCGTTGTCCCCACCAAGGTCAAGAAGTCGCAGGAGCTTA
TCTCCATGGATATTCACACCTCCACGAAGTCATACAAGTTCACCTTCTCG
ATTGAATTGATCCCTATCTGCAAGGATGATTTGGTTGCGCTGCCCATCAA
ACTTGCCAGATCACTGGGCAACATCTCGCCCCTGGCCCTCTGCTACCGCG
TCGGTACCTCTGTCAACCTTCTCGACCCCAACACGCTCCAGACCGCCGAT
GTCCCGACAAACACCTACTGGAGATCACCCTTCAGGAGTCTTGCCGATGT
GACGGAGCTGACCGAGTTCATCATCATGGATATTGAGCTGGTTGGACGGT
CGAACGGACGGTTCTATCTGGCCGAGGCAACTGTTGCCCGTGCCTCGGAT
CTTGGCTCGAACGATCAAACCTATTTCACCCGCACCCACCTGGGTGGAGT
ACTCCACGTCGGTGACTCTGTTCTCGGTTATCACCTGACTGGTACCAATT
TTAACGACCCCAACTTCGAGGCGATCGAGGCTAGTGGCCAGTACAGCTCC
GCGATTCCCGACGTTGTGCTCGTGAAGAAGTTCTATGCCCGCAAGAAGAA
GAACAAGAACCGCAACTGGCGTCTTAAGCGCATGGCTCTTGAGTACGAGG
AGGAGGCGGCCCAGCAAGCTGCTGGCAACCTCAACCGTAAGCAGGAAGCC
GAGCGCAACCGCCTTGAAGAGGACTTTGAGATGTTCTTGCGCGATGTTGA
AGAGGATCAGGAATTGCGTGGCACTCTTGATCTGTACAAGGCACGGAACC
GTGCCCCCGTGGAGCACGGTGGTATGGATATGGATGAGGATAGCGAAGAT
GATGAGGTGCCCAAGATCAACATGGATGAGCTGCTTGATGACTTTGACGA
GTTGAACATGGACGATGACCATTAA
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Coding sequence (CDS) from alignment at MCQH01000196:134163..135837+

>ATCC10864_008102-T1 ID=ATCC10864_008102-T1|Name=ATCC10864_008102-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=3162bp|location=Sequence derived from alignment at MCQH01000196:134163..135837+ (Aspergillus niger ATCC 10864)
ATGTCGATGGACCTGGATGCGCCGGTGCCTTTCGAGGCCATCCCGCAAGA
TCAGATCGCTGCGACTATCCTTTGTTGCAACTGTGGCGCGCCCATCGATG
GAACAACATCCGCAGGCGCCCTTTGCCAGGACTGTGTGAAATTGACGGTT
GATATCTCCCAGGGCATCCAGAGAGAGGCAGTTCTCCACTGCTGCAAGGA
CTGCGAGCGGTGGCTTCAACCTCCCACCAGCTGGGTTAGTGCTGCGCTCG
AATCGAAGGAACTCCTCGCACACTGCTTGCGCAAGCTCCGCGGCTTGTCC
AAGGTTCGCATTATCGATGCCAGCTTCATCTGGACCGAACCCCACTCGAA
GCGTATTAAGGTCAAGATCACCATCCAGCAGGAGGCATTCCAGGGCACCA
TTGTGCAGCAGACTTTCGAGGTTGAATACGTTGTCGCCTCGCTACAATGC
CCTGACTGCAAGAAGTCGTTCACTGTCAACACTTGGAACTCCAGCATTCA
GCTGCGCCAGAAGGTGCCTCACAAGCGAACCTTCTTGTACCTTGAGCAAA
TCATCCTCAAGCACAACGCTCACCGCGATACAATCAACATCAAGGAGGCC
AAGGACGGTTTGGATTTCTACTTTGCGCAGAGGAATCATGCGGAGAAGAT
GGTCGAGTTCCTCTCCTCCGTTGTCCCCACCAAGGTCAAGAAGTCGCAGG
AGCTTATCTCCATGGATATTCACACCTCCACGAAGTCATACAAGTTCACC
TTCTCGATTGAATTGATCCCTATCTGCAAGGATGATTTGGTTGCGCTGCC
CATCAAACTTGCCAGATCACTGGGCAACATCTCGCCCCTGGCCCTCTGCT
ACCGCGTCGGTACCTCTGTCAACCTTCTCGACCCCAACACGCTCCAGACC
GCCGATGTCCCGACAAACACCTACTGGAGATCACCCTTCAGGAGTCTTGC
CGATGTGACGGAGCTGACCGAGTTCATCATCATGGATATTGAGCTGGTTG
GACGGTCGAACGGACGGTTCTATCTGGCCGAGGCAACTGTTGCCCGTGCC
TCGGATCTTGGCTCGAACGATCAAACCTATTTCACCCGCACCCACCTGGG
TGGAGTACTCCACGTCGGTGACTCTGTTCTCGGTTATCACCTGACTGGTA
CCAATTTTAACGACCCCAACTTCGAGGCGATCGAGGCTAGTGGCCAGTAC
AGCTCCGCGATTCCCGACGTTGTGCTCGTGAAGAAGTTCTATGCCCGCAA
GAAGAAGAACAAGAACCGCAACTGGCGTCTTAAGCGCATGGCTCTTGAGT
ACGAGGAGGAGGCGGCCCAGCAAGCTGCTGGCAACCTCAACCGTAAGCAG
GAAGCCGAGCGCAACCGCCTTGAAGAGGACTTTGAGATGTTCTTGCGCGA
TGTTGAAGAGGATCAGGAATTGCGTGGCACTCTTGATCTGTACAAGGCAC
GGAACCGTGCCCCCGTGGAGCACGGTGGTATGGATATGGATGAGGATAGC
GAAGATGATGAGGTGCCCAAGATCAACATGGATGAGCTGCTTGATGACTT
TGACGAGTTGAACATGGACGATGACCATTAAATGTCGATGGACCTGGATG
CGCCGGTGCCTTTCGAGGCCATCCCGCAAGATCAGATCGCTGCGACTATC
CTTTGTTGCAACTGTGGCGCGCCCATCGATGGAACAACATCCGCAGGCGC
CCTTTGCCAGGACTGTGTGAAATTGACGGTTGATATCTCCCAGGGCATCC
AGAGAGAGGCAGTTCTCCACTGCTGCAAGGACTGCGAGCGGTGGCTTCAA
CCTCCCACCAGCTGGGTTAGTGCTGCGCTCGAATCGAAGGAACTCCTCGC
ACACTGCTTGCGCAAGCTCCGCGGCTTGTCCAAGGTTCGCATTATCGATG
CCAGCTTCATCTGGACCGAACCCCACTCGAAGCGTATTAAGGTCAAGATC
ACCATCCAGCAGGAGGCATTCCAGGGCACCATTGTGCAGCAGACTTTCGA
GGTTGAATACGTTGTCGCCTCGCTACAATGCCCTGACTGCAAGAAGTCGT
TCACTGTCAACACTTGGAACTCCAGCATTCAGCTGCGCCAGAAGGTGCCT
CACAAGCGAACCTTCTTGTACCTTGAGCAAATCATCCTCAAGCACAACGC
TCACCGCGATACAATCAACATCAAGGAGGCCAAGGACGGTTTGGATTTCT
ACTTTGCGCAGAGGAATCATGCGGAGAAGATGGTCGAGTTCCTCTCCTCC
GTTGTCCCCACCAAGGTCAAGAAGTCGCAGGAGCTTATCTCCATGGATAT
TCACACCTCCACGAAGTCATACAAGTTCACCTTCTCGATTGAATTGATCC
CTATCTGCAAGGATGATTTGGTTGCGCTGCCCATCAAACTTGCCAGATCA
CTGGGCAACATCTCGCCCCTGGCCCTCTGCTACCGCGTCGGTACCTCTGT
CAACCTTCTCGACCCCAACACGCTCCAGACCGCCGATGTCCCGACAAACA
CCTACTGGAGATCACCCTTCAGGAGTCTTGCCGATGTGACGGAGCTGACC
GAGTTCATCATCATGGATATTGAGCTGGTTGGACGGTCGAACGGACGGTT
CTATCTGGCCGAGGCAACTGTTGCCCGTGCCTCGGATCTTGGCTCGAACG
ATCAAACCTATTTCACCCGCACCCACCTGGGTGGAGTACTCCACGTCGGT
GACTCTGTTCTCGGTTATCACCTGACTGGTACCAATTTTAACGACCCCAA
CTTCGAGGCGATCGAGGCTAGTGGCCAGTACAGCTCCGCGATTCCCGACG
TTGTGCTCGTGAAGAAGTTCTATGCCCGCAAGAAGAAGAACAAGAACCGC
AACTGGCGTCTTAAGCGCATGGCTCTTGAGTACGAGGAGGAGGCGGCCCA
GCAAGCTGCTGGCAACCTCAACCGTAAGCAGGAAGCCGAGCGCAACCGCC
TTGAAGAGGACTTTGAGATGTTCTTGCGCGATGTTGAAGAGGATCAGGAA
TTGCGTGGCACTCTTGATCTGTACAAGGCACGGAACCGTGCCCCCGTGGA
GCACGGTGGTATGGATATGGATGAGGATAGCGAAGATGATGAGGTGCCCA
AGATCAACATGGATGAGCTGCTTGATGACTTTGACGAGTTGAACATGGAC
GATGACCATTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0043023ribosomal large subunit binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NMD3ATCC10864_008102Aspergillus niger ATCC 10864gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_008102-T1.exon1ATCC10864_008102-T1.exon1Aspergillus niger ATCC 10864exon
ATCC10864_008102-T1.exon2ATCC10864_008102-T1.exon2Aspergillus niger ATCC 10864exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_008102-T1.cdsATCC10864_008102-T1.cdsAspergillus niger ATCC 10864CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_008102-T1ATCC10864_008102-T1-proteinAspergillus niger ATCC 10864polypeptide


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR039768
PFAMPF04981
InterProIPR007064
Properties
Property NameValue
NoteBUSCO:EOG09262CA4
Productribosome-binding protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000196supercontigMCQH01000196:134163..135837 +
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