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ATCC10864_008313-T1, ATCC10864_008313-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_008313-T1
Unique NameATCC10864_008313-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000199:283962..286006+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_008313-T1 ID=ATCC10864_008313-T1|Name=ATCC10864_008313-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=2045bp|location=Sequence derived from alignment at MCQH01000199:283962..286006+ (Aspergillus niger ATCC 10864)
ATGGCCCCCAAACCACCCCCGGGCACCTCCGCCAGAGCATGGGACGGAGT
GACGCCCGCCCTGTCGGAATGGGTGCTGGATGCCGTTGCTTCTATGGGCT
TCACCCGCATGACCCCCGTTCAGGCTTCTGCGATTCCCTTGTTCATGGCG
CATAAAGATGTCGTTGTTGAAGCAGTCACAGGAAGTGGAAAGACCTTGTC
TTTCTTGATTCCAGTTGTCGAGAAGCTTTTGCGCCTGGAAGAACCACTCA
AGAAACACCATGTCGGAGCCATCATCATCTCTCCAACCAGGTTGGTCATA
CCGTATACCGTTGAAAAGGTCACGGTCACAGTACTGACAGTTGCGCTTAA
GAGAACTCGCATCGCAGATTTACAACGTTCTGACATCGTTGCTCGCCTTC
CATCCTCCATCCGCCTCCACTCTCAAACCCTCCGATGATGACGATGATGC
ACCTCGTCAGAAATTCCCCTCCTCGACCCTCAAAGTTGTCCCGCAGCTCC
TTCTCGGTGGTTCGACCACTCCGGCTGAGGATTTGAGTACCTTCTTGAAG
CGGTCTCCCAATCTGTTGGTATCTACGCCAGGACGACTGTTGGAGTTGCT
CTCTTCACCCCATGTCCACTGCCCCCAGTCGTCTTTCGAAATGCTTGTCA
TGGATGAAGCGGACAGGCTTCTGGATCTTGGATTCAAGGATACACTACAG
AACATCTTGCGCCGTCTACCCAAGCAACGGCGCACGGGGTTGTTCAGTGC
CAGTGTCAGTGAGGCTGTTGATCAGATTGTTCGGGTTGGTCTGCGCAACC
CCGTCAAAGTCATGGTCAAGGTAAAGGGCACTTCAGGTGTTCAGGATAAA
CGCACACCCGCTAGGTCCGTACCCTTGTTCCTCCATCATTGAAGATCCTG
TAACTGACAGCCATACTAGCTTGCAAATGACGTACCTCACAGCTCCCCCA
ACTCACAAATTCCCTGCCATCAAACACATTCTCTACTCACTCGAGCCCGC
TCCTCAAAAGACCATCATGTTCGTCTCAACATGCTCGGGTGTCGACTACC
TCTCCGCAATCCTTCCTTCAATCATCGGCGATGACTTCCAACTGATCCCG
CTGCACGGCAAACACCAAGCAAACGTCCGCGAAAAGAACTTCAACCGCTT
CGTCAACTCCCACACCCCCGCCATTCTCCTCACCACCGACGTTGCTTCCC
GTGGACTAGACATCCCCTCAGTCGACGTCGTAATACAGATTGACCCCCCT
TCAGACCCAAAGACTTTCATCCACAGATGCGGCCGTGCCGGACGTGCAGG
CCGCAAAGGTCTGAGTGTGGTCCTTCTTCACCCCGGCCGAGAGGAAGACT
ACGTCTCGTTCCTCGAAGTCCGCAAGACCCCCGTCGCACCGTATCCTCAC
ACTCTCACCATAACCGACGCAGACGCCGCTGCAGCCACCGAAACGGCACG
TAAAGCCGTCCTTGCAGACCGCGCACTACACGACAGGGGCCAGAAGGCCT
TCGTCAGCTGGTTCCGAAGCTACAGCAAGCACCAGGCTAGCAGCATATTC
CGCGTCGCAGACCTCGATTGGGAAGGACTAGGCAATGCATGGGGTCTCCT
GAAGCTTCCCAAGATGCCCGAGTTGAGAAACTTCCAAGGTGACCGGACGC
TCGGCGTGAACTTGGACTGGGAGAACTACGCATACAAGGACAAACAGCGC
GAGAAGCGCCGGAAGGAACAAGTGCAGGAGAATGCCGAGAACGGTGTCGC
GGACGATCAAGCTGCTGGCAAGAAGCGCTCCAGCGAGAGCGTCGCGTGGA
GCAGGAATCTCGACAACCGGAATAAAAAGCTGAAGCGTCGGGAGGCCAAG
CAAGCGCGTCAGCAGAAGGACAAATGGGAGAAGATGACGGAGGAAGAGCG
ACAAAAGGTGCTCGAGACGGAGAAGATGCTTGAGCAGATCCGGGTGAAGA
ACGAAGAAGAACGACTGCTTAGGCGTGCAGCCAAAGATAAGGAATCTAAG
GCTGCTGGTGGGGATGATGATGATGAGTTCAAGGGGTTTGACTGA
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Coding sequence (CDS) from alignment at MCQH01000199:283962..286006+

>ATCC10864_008313-T1 ID=ATCC10864_008313-T1|Name=ATCC10864_008313-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=5787bp|location=Sequence derived from alignment at MCQH01000199:283962..286006+ (Aspergillus niger ATCC 10864)
ATGGCCCCCAAACCACCCCCGGGCACCTCCGCCAGAGCATGGGACGGAGT
GACGCCCGCCCTGTCGGAATGGGTGCTGGATGCCGTTGCTTCTATGGGCT
TCACCCGCATGACCCCCGTTCAGGCTTCTGCGATTCCCTTGTTCATGGCG
CATAAAGATGTCGTTGTTGAAGCAGTCACAGGAAGTGGAAAGACCTTGTC
TTTCTTGATTCCAGTTGTCGAGAAGCTTTTGCGCCTGGAAGAACCACTCA
AGAAACACCATGTCGGAGCCATCATCATCTCTCCAACCAGAGAACTCGCA
TCGCAGATTTACAACGTTCTGACATCGTTGCTCGCCTTCCATCCTCCATC
CGCCTCCACTCTCAAACCCTCCGATGATGACGATGATGCACCTCGTCAGA
AATTCCCCTCCTCGACCCTCAAAGTTGTCCCGCAGCTCCTTCTCGGTGGT
TCGACCACTCCGGCTGAGGATTTGAGTACCTTCTTGAAGCGGTCTCCCAA
TCTGTTGGTATCTACGCCAGGACGACTGTTGGAGTTGCTCTCTTCACCCC
ATGTCCACTGCCCCCAGTCGTCTTTCGAAATGCTTGTCATGGATGAAGCG
GACAGGCTTCTGGATCTTGGATTCAAGGATACACTACAGAACATCTTGCG
CCGTCTACCCAAGCAACGGCGCACGGGGTTGTTCAGTGCCAGTGTCAGTG
AGGCTGTTGATCAGATTGTTCGGGTTGGTCTGCGCAACCCCGTCAAAGTC
ATGGTCAAGGTAAAGGGCACTTCAGGTGTTCAGGATAAACGCACACCCGC
TAGCTTGCAAATGACGTACCTCACAGCTCCCCCAACTCACAAATTCCCTG
CCATCAAACACATTCTCTACTCACTCGAGCCCGCTCCTCAAAAGACCATC
ATGTTCGTCTCAACATGCTCGGGTGTCGACTACCTCTCCGCAATCCTTCC
TTCAATCATCGGCGATGACTTCCAACTGATCCCGCTGCACGGCAAACACC
AAGCAAACGTCCGCGAAAAGAACTTCAACCGCTTCGTCAACTCCCACACC
CCCGCCATTCTCCTCACCACCGACGTTGCTTCCCGTGGACTAGACATCCC
CTCAGTCGACGTCGTAATACAGATTGACCCCCCTTCAGACCCAAAGACTT
TCATCCACAGATGCGGCCGTGCCGGACGTGCAGGCCGCAAAGGTCTGAGT
GTGGTCCTTCTTCACCCCGGCCGAGAGGAAGACTACGTCTCGTTCCTCGA
AGTCCGCAAGACCCCCGTCGCACCGTATCCTCACACTCTCACCATAACCG
ACGCAGACGCCGCTGCAGCCACCGAAACGGCACGTAAAGCCGTCCTTGCA
GACCGCGCACTACACGACAGGGGCCAGAAGGCCTTCGTCAGCTGGTTCCG
AAGCTACAGCAAGCACCAGGCTAGCAGCATATTCCGCGTCGCAGACCTCG
ATTGGGAAGGACTAGGCAATGCATGGGGTCTCCTGAAGCTTCCCAAGATG
CCCGAGTTGAGAAACTTCCAAGGTGACCGGACGCTCGGCGTGAACTTGGA
CTGGGAGAACTACGCATACAAGGACAAACAGCGCGAGAAGCGCCGGAAGG
AACAAGTGCAGGAGAATGCCGAGAACGGTGTCGCGGACGATCAAGCTGCT
GGCAAGAAGCGCTCCAGCGAGAGCGTCGCGTGGAGCAGGAATCTCGACAA
CCGGAATAAAAAGCTGAAGCGTCGGGAGGCCAAGCAAGCGCGTCAGCAGA
AGGACAAATGGGAGAAGATGACGGAGGAAGAGCGACAAAAGGTGCTCGAG
ACGGAGAAGATGCTTGAGCAGATCCGGGTGAAGAACGAAGAAGAACGACT
GCTTAGGCGTGCAGCCAAAGATAAGGAATCTAAGGCTGCTGGTGGGGATG
ATGATGATGAGTTCAAGGGGTTTGACTGAATGGCCCCCAAACCACCCCCG
GGCACCTCCGCCAGAGCATGGGACGGAGTGACGCCCGCCCTGTCGGAATG
GGTGCTGGATGCCGTTGCTTCTATGGGCTTCACCCGCATGACCCCCGTTC
AGGCTTCTGCGATTCCCTTGTTCATGGCGCATAAAGATGTCGTTGTTGAA
GCAGTCACAGGAAGTGGAAAGACCTTGTCTTTCTTGATTCCAGTTGTCGA
GAAGCTTTTGCGCCTGGAAGAACCACTCAAGAAACACCATGTCGGAGCCA
TCATCATCTCTCCAACCAGAGAACTCGCATCGCAGATTTACAACGTTCTG
ACATCGTTGCTCGCCTTCCATCCTCCATCCGCCTCCACTCTCAAACCCTC
CGATGATGACGATGATGCACCTCGTCAGAAATTCCCCTCCTCGACCCTCA
AAGTTGTCCCGCAGCTCCTTCTCGGTGGTTCGACCACTCCGGCTGAGGAT
TTGAGTACCTTCTTGAAGCGGTCTCCCAATCTGTTGGTATCTACGCCAGG
ACGACTGTTGGAGTTGCTCTCTTCACCCCATGTCCACTGCCCCCAGTCGT
CTTTCGAAATGCTTGTCATGGATGAAGCGGACAGGCTTCTGGATCTTGGA
TTCAAGGATACACTACAGAACATCTTGCGCCGTCTACCCAAGCAACGGCG
CACGGGGTTGTTCAGTGCCAGTGTCAGTGAGGCTGTTGATCAGATTGTTC
GGGTTGGTCTGCGCAACCCCGTCAAAGTCATGGTCAAGGTAAAGGGCACT
TCAGGTGTTCAGGATAAACGCACACCCGCTAGCTTGCAAATGACGTACCT
CACAGCTCCCCCAACTCACAAATTCCCTGCCATCAAACACATTCTCTACT
CACTCGAGCCCGCTCCTCAAAAGACCATCATGTTCGTCTCAACATGCTCG
GGTGTCGACTACCTCTCCGCAATCCTTCCTTCAATCATCGGCGATGACTT
CCAACTGATCCCGCTGCACGGCAAACACCAAGCAAACGTCCGCGAAAAGA
ACTTCAACCGCTTCGTCAACTCCCACACCCCCGCCATTCTCCTCACCACC
GACGTTGCTTCCCGTGGACTAGACATCCCCTCAGTCGACGTCGTAATACA
GATTGACCCCCCTTCAGACCCAAAGACTTTCATCCACAGATGCGGCCGTG
CCGGACGTGCAGGCCGCAAAGGTCTGAGTGTGGTCCTTCTTCACCCCGGC
CGAGAGGAAGACTACGTCTCGTTCCTCGAAGTCCGCAAGACCCCCGTCGC
ACCGTATCCTCACACTCTCACCATAACCGACGCAGACGCCGCTGCAGCCA
CCGAAACGGCACGTAAAGCCGTCCTTGCAGACCGCGCACTACACGACAGG
GGCCAGAAGGCCTTCGTCAGCTGGTTCCGAAGCTACAGCAAGCACCAGGC
TAGCAGCATATTCCGCGTCGCAGACCTCGATTGGGAAGGACTAGGCAATG
CATGGGGTCTCCTGAAGCTTCCCAAGATGCCCGAGTTGAGAAACTTCCAA
GGTGACCGGACGCTCGGCGTGAACTTGGACTGGGAGAACTACGCATACAA
GGACAAACAGCGCGAGAAGCGCCGGAAGGAACAAGTGCAGGAGAATGCCG
AGAACGGTGTCGCGGACGATCAAGCTGCTGGCAAGAAGCGCTCCAGCGAG
AGCGTCGCGTGGAGCAGGAATCTCGACAACCGGAATAAAAAGCTGAAGCG
TCGGGAGGCCAAGCAAGCGCGTCAGCAGAAGGACAAATGGGAGAAGATGA
CGGAGGAAGAGCGACAAAAGGTGCTCGAGACGGAGAAGATGCTTGAGCAG
ATCCGGGTGAAGAACGAAGAAGAACGACTGCTTAGGCGTGCAGCCAAAGA
TAAGGAATCTAAGGCTGCTGGTGGGGATGATGATGATGAGTTCAAGGGGT
TTGACTGAATGGCCCCCAAACCACCCCCGGGCACCTCCGCCAGAGCATGG
GACGGAGTGACGCCCGCCCTGTCGGAATGGGTGCTGGATGCCGTTGCTTC
TATGGGCTTCACCCGCATGACCCCCGTTCAGGCTTCTGCGATTCCCTTGT
TCATGGCGCATAAAGATGTCGTTGTTGAAGCAGTCACAGGAAGTGGAAAG
ACCTTGTCTTTCTTGATTCCAGTTGTCGAGAAGCTTTTGCGCCTGGAAGA
ACCACTCAAGAAACACCATGTCGGAGCCATCATCATCTCTCCAACCAGAG
AACTCGCATCGCAGATTTACAACGTTCTGACATCGTTGCTCGCCTTCCAT
CCTCCATCCGCCTCCACTCTCAAACCCTCCGATGATGACGATGATGCACC
TCGTCAGAAATTCCCCTCCTCGACCCTCAAAGTTGTCCCGCAGCTCCTTC
TCGGTGGTTCGACCACTCCGGCTGAGGATTTGAGTACCTTCTTGAAGCGG
TCTCCCAATCTGTTGGTATCTACGCCAGGACGACTGTTGGAGTTGCTCTC
TTCACCCCATGTCCACTGCCCCCAGTCGTCTTTCGAAATGCTTGTCATGG
ATGAAGCGGACAGGCTTCTGGATCTTGGATTCAAGGATACACTACAGAAC
ATCTTGCGCCGTCTACCCAAGCAACGGCGCACGGGGTTGTTCAGTGCCAG
TGTCAGTGAGGCTGTTGATCAGATTGTTCGGGTTGGTCTGCGCAACCCCG
TCAAAGTCATGGTCAAGGTAAAGGGCACTTCAGGTGTTCAGGATAAACGC
ACACCCGCTAGCTTGCAAATGACGTACCTCACAGCTCCCCCAACTCACAA
ATTCCCTGCCATCAAACACATTCTCTACTCACTCGAGCCCGCTCCTCAAA
AGACCATCATGTTCGTCTCAACATGCTCGGGTGTCGACTACCTCTCCGCA
ATCCTTCCTTCAATCATCGGCGATGACTTCCAACTGATCCCGCTGCACGG
CAAACACCAAGCAAACGTCCGCGAAAAGAACTTCAACCGCTTCGTCAACT
CCCACACCCCCGCCATTCTCCTCACCACCGACGTTGCTTCCCGTGGACTA
GACATCCCCTCAGTCGACGTCGTAATACAGATTGACCCCCCTTCAGACCC
AAAGACTTTCATCCACAGATGCGGCCGTGCCGGACGTGCAGGCCGCAAAG
GTCTGAGTGTGGTCCTTCTTCACCCCGGCCGAGAGGAAGACTACGTCTCG
TTCCTCGAAGTCCGCAAGACCCCCGTCGCACCGTATCCTCACACTCTCAC
CATAACCGACGCAGACGCCGCTGCAGCCACCGAAACGGCACGTAAAGCCG
TCCTTGCAGACCGCGCACTACACGACAGGGGCCAGAAGGCCTTCGTCAGC
TGGTTCCGAAGCTACAGCAAGCACCAGGCTAGCAGCATATTCCGCGTCGC
AGACCTCGATTGGGAAGGACTAGGCAATGCATGGGGTCTCCTGAAGCTTC
CCAAGATGCCCGAGTTGAGAAACTTCCAAGGTGACCGGACGCTCGGCGTG
AACTTGGACTGGGAGAACTACGCATACAAGGACAAACAGCGCGAGAAGCG
CCGGAAGGAACAAGTGCAGGAGAATGCCGAGAACGGTGTCGCGGACGATC
AAGCTGCTGGCAAGAAGCGCTCCAGCGAGAGCGTCGCGTGGAGCAGGAAT
CTCGACAACCGGAATAAAAAGCTGAAGCGTCGGGAGGCCAAGCAAGCGCG
TCAGCAGAAGGACAAATGGGAGAAGATGACGGAGGAAGAGCGACAAAAGG
TGCTCGAGACGGAGAAGATGCTTGAGCAGATCCGGGTGAAGAACGAAGAA
GAACGACTGCTTAGGCGTGCAGCCAAAGATAAGGAATCTAAGGCTGCTGG
TGGGGATGATGATGATGAGTTCAAGGGGTTTGACTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003676nucleic acid binding
GO:0003724RNA helicase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SPB4ATCC10864_008313Aspergillus niger ATCC 10864gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_008313-T1.exon1ATCC10864_008313-T1.exon1Aspergillus niger ATCC 10864exon
ATCC10864_008313-T1.exon2ATCC10864_008313-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_008313-T1.exon3ATCC10864_008313-T1.exon3Aspergillus niger ATCC 10864exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_008313-T1.cdsATCC10864_008313-T1.cdsAspergillus niger ATCC 10864CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_008313-T1ATCC10864_008313-T1-proteinAspergillus niger ATCC 10864polypeptide


Cross References
External references for this mRNA
DatabaseAccession
PFAMPF00270
InterProIPR027417
InterProIPR000629
PFAMPF00271
InterProIPR014014
PFAMPF13959
InterProIPR001650
InterProIPR025313
InterProIPR011545
InterProIPR014001
Properties
Property NameValue
ProductATP-dependent rRNA helicase spb4
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000199supercontigMCQH01000199:283962..286006 +
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