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ATCC10864_010996-T1, ATCC10864_010996-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_010996-T1
Unique NameATCC10864_010996-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000246:755692..757192-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_010996-T1 ID=ATCC10864_010996-T1|Name=ATCC10864_010996-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1501bp|location=Sequence derived from alignment at MCQH01000246:755692..757192- (Aspergillus niger ATCC 10864)
ATGCGCGCCAGCATTCTACCGTTGACTCTGTTCTTGGCCACTCTGGCCGG
GGCGCAACTCTCCGGCCCCGTTGGCCCGCTAGTGGACTACAGCACCAAAG
CCAGAAACCAGACCTGCAATATCATCGATTACGGGGCTGTCGCAGATGGT
AAAACGGATATATCGCAGGCTCTACTTGATGCCTGGGGAAACTGTTCCGT
GGGGGGACTGGTCTACATCCCACCCGGTAACTACTCGCTGGCCGAGGACA
TTGAGCTCAAGCACGGCCAGTCCTCTGCAATTCAGCTAGACGGTGTGGTT
ATGCGCGGACACCGCGGCTCGTACCAGATGATCCTTATCCGTGACTGCAA
TGACTTCGAATTTTTCAGCGGCAATTCCCGCGGGGCCATTCAGGGCTTTG
GTTACGAATATCTGCAGAATGACACCTACGGCGAGAGACTCTTGCGCATC
CAAGAGGTTAACAATTTCTCGGTGCATGGATTCGCACTAATTGACTCGCC
TTCCTACTACATTGTTTTCGATACGGTCACCAGTGGGGAGGTATATAACA
TCTTGATCCGCGGCGTGACATCTGTGGGAGCGACAGATGCTATCGACGTA
TGGGGAGAGAACATGTGGTTCCATGACATTGAAGTGAGCAACGGCGATGA
ATGTGTCACCGTCAAGTCTCCGGCGCACAATTATCTGATTGAGAACATCT
ACTGCAATCTCAGTGGTGGGACCGCGATTGGATCCTTAGGCACGGGCACC
AACATTTCCGACATCCACTACCGCAATCTCTACATGAACCAAGCAGATGC
GTGCTTTCTGAAATCCAACAATGGGGATGGGATTGTCAAAAATATCATCT
GGGAGAATGTCATAGTCCACGGCGGTCCGTACCCGCTGGCCATAGACGAG
GCCTGGGGAGATGATCGAGGATCCGTAGGAGTTCAAGTGTCCAACCTCAC
ATTCCGAGTAAGTACACGATAATATTTCAATGTCTTAAGAGATCCTAATT
TGCTTTGTTATATAGAACTGGCACGGAGAATCCGTGAGCGCCTCACGCCC
AGTCATCCGCCTACAATGTGACTCCGACGTCCCGTGCTACGATATTACCA
TCGAAAACGTGAACCTGTGGGCCAACGACAGCAACTATGTGGTTTGGCAG
TGCGAGAACGCCTATGGAGATGGGGCCTGTCTCTCTAGTGCAGAGGGAAC
AAAAGATTTGGAAACCTTTACCAGCAAACAAACTATAACTGCCACCCCGT
ATGTGACTTGTCCATTCTTTTCCACGGAAATTGCTAACAAGAAGATAGGT
CCTATGCTGCGCCAACCATGGCAGCTGACTTCACCTTTAATCTGCCATCA
ACGAGCCCTTTTACTATTCCTCCCATGCCGACAAGTTTCTACCCCGGTGC
TACTCCCATCTCAACCCTCTTGCATCTACATGGTGCGGGCGGTCTCCCAT
CAGCATCTCCCATTTCGCATCATCGACGACACCAATGACTTGCCTGTGTG
A
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Coding sequence (CDS) from alignment at MCQH01000246:755692..757192-

>ATCC10864_010996-T1 ID=ATCC10864_010996-T1|Name=ATCC10864_010996-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=2886bp|location=Sequence derived from alignment at MCQH01000246:755692..757192- (Aspergillus niger ATCC 10864)
AACTGGCACGGAGAATCCGTGAGCGCCTCACGCCCAGTCATCCGCCTACA
ATGTGACTCCGACGTCCCGTGCTACGATATTACCATCGAAAACGTGAACC
TGTGGGCCAACGACAGCAACTATGTGGTTTGGCAGTGCGAGAACGCCTAT
GGAGATGGGGCCTGTCTCTCTAGTGCAGAGGGAACAAAAGATTTGGAAAC
CTTTACCAGCAAACAAACTATAACTGCCACCCCGTATGTGACTTGTCCAT
TCTTTTCCACGGAAATTGCTAACAAGAAGATAGGTCCTATGCTGCGCCAA
CCATGGCAGCTGACTTCACCTTTAATCTGCCATCAACGAGCCCTTTTACT
ATTCCTCCCATGCCGACAAGTTTCTACCCCGGTGCTACTCCCATCTCAAC
CCTCTTGCATCTACATGGTGCGGGCGGTCTCCCATCAGCATCTCCCATTT
CGCATCATCGACGACACCAATGACTTGCCTGTGTGAATGCGCGCCAGCAT
TCTACCGTTGACTCTGTTCTTGGCCACTCTGGCCGGGGCGCAACTCTCCG
GCCCCGTTGGCCCGCTAGTGGACTACAGCACCAAAGCCAGAAACCAGACC
TGCAATATCATCGATTACGGGGCTGTCGCAGATGGTAAAACGGATATATC
GCAGGCTCTACTTGATGCCTGGGGAAACTGTTCCGTGGGGGGACTGGTCT
ACATCCCACCCGGTAACTACTCGCTGGCCGAGGACATTGAGCTCAAGCAC
GGCCAGTCCTCTGCAATTCAGCTAGACGGTGTGGTTATGCGCGGACACCG
CGGCTCGTACCAGATGATCCTTATCCGTGACTGCAATGACTTCGAATTTT
TCAGCGGCAATTCCCGCGGGGCCATTCAGGGCTTTGGTTACGAATATCTG
CAGAATGACACCTACGGCGAGAGACTCTTGCGCATCCAAGAGGTTAACAA
TTTCTCGGTGCATGGATTCGCACTAATTGACTCGCCTTCCTACTACATTG
TTTTCGATACGGTCACCAGTGGGGAGGTATATAACATCTTGATCCGCGGC
GTGACATCTGTGGGAGCGACAGATGCTATCGACGTATGGGGAGAGAACAT
GTGGTTCCATGACATTGAAGTGAGCAACGGCGATGAATGTGTCACCGTCA
AGTCTCCGGCGCACAATTATCTGATTGAGAACATCTACTGCAATCTCAGT
GGTGGGACCGCGATTGGATCCTTAGGCACGGGCACCAACATTTCCGACAT
CCACTACCGCAATCTCTACATGAACCAAGCAGATGCGTGCTTTCTGAAAT
CCAACAATGGGGATGGGATTGTCAAAAATATCATCTGGGAGAATGTCATA
GTCCACGGCGGTCCGTACCCGCTGGCCATAGACGAGGCCTGGGGAGATGA
TCGAGGATCCGTAGGAGTTCAAGTGTCCAACCTCACATTCCGAAACTGGC
ACGGAGAATCCGTGAGCGCCTCACGCCCAGTCATCCGCCTACAATGTGAC
TCCGACGTCCCGTGCTACGATATTACCATCGAAAACGTGAACCTGTGGGC
CAACGACAGCAACTATGTGGTTTGGCAGTGCGAGAACGCCTATGGAGATG
GGGCCTGTCTCTCTAGTGCAGAGGGAACAAAAGATTTGGAAACCTTTACC
AGCAAACAAACTATAACTGCCACCCCGTATGTGACTTGTCCATTCTTTTC
CACGGAAATTGCTAACAAGAAGATAGGTCCTATGCTGCGCCAACCATGGC
AGCTGACTTCACCTTTAATCTGCCATCAACGAGCCCTTTTACTATTCCTC
CCATGCCGACAAGTTTCTACCCCGGTGCTACTCCCATCTCAACCCTCTTG
CATCTACATGGTGCGGGCGGTCTCCCATCAGCATCTCCCATTTCGCATCA
TCGACGACACCAATGACTTGCCTGTGTGAATGCGCGCCAGCATTCTACCG
TTGACTCTGTTCTTGGCCACTCTGGCCGGGGCGCAACTCTCCGGCCCCGT
TGGCCCGCTAGTGGACTACAGCACCAAAGCCAGAAACCAGACCTGCAATA
TCATCGATTACGGGGCTGTCGCAGATGGTAAAACGGATATATCGCAGGCT
CTACTTGATGCCTGGGGAAACTGTTCCGTGGGGGGACTGGTCTACATCCC
ACCCGGTAACTACTCGCTGGCCGAGGACATTGAGCTCAAGCACGGCCAGT
CCTCTGCAATTCAGCTAGACGGTGTGGTTATGCGCGGACACCGCGGCTCG
TACCAGATGATCCTTATCCGTGACTGCAATGACTTCGAATTTTTCAGCGG
CAATTCCCGCGGGGCCATTCAGGGCTTTGGTTACGAATATCTGCAGAATG
ACACCTACGGCGAGAGACTCTTGCGCATCCAAGAGGTTAACAATTTCTCG
GTGCATGGATTCGCACTAATTGACTCGCCTTCCTACTACATTGTTTTCGA
TACGGTCACCAGTGGGGAGGTATATAACATCTTGATCCGCGGCGTGACAT
CTGTGGGAGCGACAGATGCTATCGACGTATGGGGAGAGAACATGTGGTTC
CATGACATTGAAGTGAGCAACGGCGATGAATGTGTCACCGTCAAGTCTCC
GGCGCACAATTATCTGATTGAGAACATCTACTGCAATCTCAGTGGTGGGA
CCGCGATTGGATCCTTAGGCACGGGCACCAACATTTCCGACATCCACTAC
CGCAATCTCTACATGAACCAAGCAGATGCGTGCTTTCTGAAATCCAACAA
TGGGGATGGGATTGTCAAAAATATCATCTGGGAGAATGTCATAGTCCACG
GCGGTCCGTACCCGCTGGCCATAGACGAGGCCTGGGGAGATGATCGAGGA
TCCGTAGGAGTTCAAGTGTCCAACCTCACATTCCGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC10864_010996ATCC10864_010996Aspergillus niger ATCC 10864gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_010996-T1ATCC10864_010996-T1-proteinAspergillus niger ATCC 10864polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_010996-T1.cdsATCC10864_010996-T1.cdsAspergillus niger ATCC 10864CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_010996-T1.exon2ATCC10864_010996-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_010996-T1.exon1ATCC10864_010996-T1.exon1Aspergillus niger ATCC 10864exon


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR000743
PFAMPF12708
InterProIPR012334
InterProIPR011050
PFAMPF00295
Properties
Property NameValue
NoteCAZy:GH28
NoteSECRETED:SignalP(1-18)
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000246supercontigMCQH01000246:755692..757192 -
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