You are here

Home

ATCC10864_011435-T1, ATCC10864_011435-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_011435-T1
Unique NameATCC10864_011435-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000282:300148..301770-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_011435-T1 ID=ATCC10864_011435-T1|Name=ATCC10864_011435-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1623bp|location=Sequence derived from alignment at MCQH01000282:300148..301770- (Aspergillus niger ATCC 10864)
ATGTCTCTCGTGCCCGTCGACACCACTCTGCAAGTCCCACCTCCTGATCC
GGTTCAGAAGCCCCCTGAGGTGGCCATCACGCCCTGTGACCCATGGCCTG
CACCATACTATTTTGAAGGCGGCTTGCGCCGGGTGAAGCCCTACCACTAC
ACCTACAACACTTTTTGCAAGGAGCGCTGGCGGGGTCGTGAATTGGTGGA
CATTTTCCTGTCGGAGTTTCGCGACCGTCCCGCAGAGTACTACGTACGTT
CTCATCTCTTGGCTATTCTTTAAAGAATCATATACTGACATAGTTGTTCT
GGACCGCAGAGGAAAGCCCTACAAGATGGCCTTGTTGCCGTCAACGGCAC
GCCTGCTGGCCCCAATACCGTCGTCAAGAACGGCCAGATCATCTCGCATA
CTCTGCACCGTCACGAACCCCCCGTCACCGGGAAAGAGATTGGTATCATC
CACGAGGATGACGATCTGATTGTCATTGACAAGCCCGCCGGTGTGCCCGT
CCACTCCGCTGGTCGCTACCACTACAACTCCGTGCTCGAGATCATGCGCT
CTCAACGCCATCCGGAATGGGTCCCACGACCTTGCAATCGTTTGGACCGA
CTCACCTCCGGAGTCATGTTCCTCGGAAAGACCGCGAAAGCTGCAGAGAA
CATGACCGGAAAGCTCAAGGCCCGCACCCTCCAGAAGGAGTATGTGGCGC
GCGTCAAGGGAAAATTCCCTGACGGTGTCATCGTCTGCGATCAGCCCATC
ATGTCCGTGAGCCCAAAGGTAGGCTTGAACCGCGTTCGTGCCACTGGCAA
GGAGGCAAAGACCAAGTTCCGTCGCCTGGCGTATATCCCGCCTCAAGCTC
CGGAGCCTCAGAGCGCTTCCGACGCAGAGGGACGGGTGGCGACCCCACCC
CCGATCTACACCAACGAAGACGAAGGATACAGTATCGTCCACTGTCTGCC
ATTGACTGGCCGCACGCATCAGATCCGCGTGCATCTCCAGTTCCTCGGAC
ACCCGATCTCGAACGATCCCATCTACTCCAATCGCAAAGTCTTCGGACCC
GATCTCGGAAAGAACGAGACCAGCGACGAGCGCGACAACGAGCTCATTGA
TAAGCTATGTAATATTGGCAAGACTGAAGTCCCCGACACCGTAAGCTATC
GGACACACCTTACCACAGTGCCTCTGGTACCGCCAGGCACGGACAACTCT
GTTGTGGAGGAGATAATGTCGCGCGAGCACGAGGCCGCCGTGGAGAGATA
CCACAAGCGCAAAGGCGAGATGTTATCTGGCGAGAGATGCAAGATCTGCG
ACACAGAGCTCTACTCGGACCCTAGACCTGAGGATCTAGGCATCTTCCTC
CACGCCGCGGCGTACTCTGACAAAGAGGATGGCTGGAAATACACTAGCAA
GATGCCTACCTGGGCTCTGCCGCCTGATGGCGTGGAGGGACCGCGCGAGA
TGCCCGACTGGGTGTTTGTTCCCGAGGAAGAGGAGATTGTTATCGGACAT
GCTGTCTTGCCTGGCGCGGAGGACGGCTCGGAGTCGAATATCCCTGCTCT
TGTGCAGGGTGTCGGCCTAGTCGACATTTCGTCTGGTAGGAAGGCAGATG
CCGCTGCGCAGGCGACTGCTTGA
back to top

Coding sequence (CDS) from alignment at MCQH01000282:300148..301770-

>ATCC10864_011435-T1 ID=ATCC10864_011435-T1|Name=ATCC10864_011435-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=3114bp|location=Sequence derived from alignment at MCQH01000282:300148..301770- (Aspergillus niger ATCC 10864)
AGGAAAGCCCTACAAGATGGCCTTGTTGCCGTCAACGGCACGCCTGCTGG
CCCCAATACCGTCGTCAAGAACGGCCAGATCATCTCGCATACTCTGCACC
GTCACGAACCCCCCGTCACCGGGAAAGAGATTGGTATCATCCACGAGGAT
GACGATCTGATTGTCATTGACAAGCCCGCCGGTGTGCCCGTCCACTCCGC
TGGTCGCTACCACTACAACTCCGTGCTCGAGATCATGCGCTCTCAACGCC
ATCCGGAATGGGTCCCACGACCTTGCAATCGTTTGGACCGACTCACCTCC
GGAGTCATGTTCCTCGGAAAGACCGCGAAAGCTGCAGAGAACATGACCGG
AAAGCTCAAGGCCCGCACCCTCCAGAAGGAGTATGTGGCGCGCGTCAAGG
GAAAATTCCCTGACGGTGTCATCGTCTGCGATCAGCCCATCATGTCCGTG
AGCCCAAAGGTAGGCTTGAACCGCGTTCGTGCCACTGGCAAGGAGGCAAA
GACCAAGTTCCGTCGCCTGGCGTATATCCCGCCTCAAGCTCCGGAGCCTC
AGAGCGCTTCCGACGCAGAGGGACGGGTGGCGACCCCACCCCCGATCTAC
ACCAACGAAGACGAAGGATACAGTATCGTCCACTGTCTGCCATTGACTGG
CCGCACGCATCAGATCCGCGTGCATCTCCAGTTCCTCGGACACCCGATCT
CGAACGATCCCATCTACTCCAATCGCAAAGTCTTCGGACCCGATCTCGGA
AAGAACGAGACCAGCGACGAGCGCGACAACGAGCTCATTGATAAGCTATG
TAATATTGGCAAGACTGAAGTCCCCGACACCGTAAGCTATCGGACACACC
TTACCACAGTGCCTCTGGTACCGCCAGGCACGGACAACTCTGTTGTGGAG
GAGATAATGTCGCGCGAGCACGAGGCCGCCGTGGAGAGATACCACAAGCG
CAAAGGCGAGATGTTATCTGGCGAGAGATGCAAGATCTGCGACACAGAGC
TCTACTCGGACCCTAGACCTGAGGATCTAGGCATCTTCCTCCACGCCGCG
GCGTACTCTGACAAAGAGGATGGCTGGAAATACACTAGCAAGATGCCTAC
CTGGGCTCTGCCGCCTGATGGCGTGGAGGGACCGCGCGAGATGCCCGACT
GGGTGTTTGTTCCCGAGGAAGAGGAGATTGTTATCGGACATGCTGTCTTG
CCTGGCGCGGAGGACGGCTCGGAGTCGAATATCCCTGCTCTTGTGCAGGG
TGTCGGCCTAGTCGACATTTCGTCTGGTAGGAAGGCAGATGCCGCTGCGC
AGGCGACTGCTTGAATGTCTCTCGTGCCCGTCGACACCACTCTGCAAGTC
CCACCTCCTGATCCGGTTCAGAAGCCCCCTGAGGTGGCCATCACGCCCTG
TGACCCATGGCCTGCACCATACTATTTTGAAGGCGGCTTGCGCCGGGTGA
AGCCCTACCACTACACCTACAACACTTTTTGCAAGGAGCGCTGGCGGGGT
CGTGAATTGGTGGACATTTTCCTGTCGGAGTTTCGCGACCGTCCCGCAGA
GTACTACAGGAAAGCCCTACAAGATGGCCTTGTTGCCGTCAACGGCACGC
CTGCTGGCCCCAATACCGTCGTCAAGAACGGCCAGATCATCTCGCATACT
CTGCACCGTCACGAACCCCCCGTCACCGGGAAAGAGATTGGTATCATCCA
CGAGGATGACGATCTGATTGTCATTGACAAGCCCGCCGGTGTGCCCGTCC
ACTCCGCTGGTCGCTACCACTACAACTCCGTGCTCGAGATCATGCGCTCT
CAACGCCATCCGGAATGGGTCCCACGACCTTGCAATCGTTTGGACCGACT
CACCTCCGGAGTCATGTTCCTCGGAAAGACCGCGAAAGCTGCAGAGAACA
TGACCGGAAAGCTCAAGGCCCGCACCCTCCAGAAGGAGTATGTGGCGCGC
GTCAAGGGAAAATTCCCTGACGGTGTCATCGTCTGCGATCAGCCCATCAT
GTCCGTGAGCCCAAAGGTAGGCTTGAACCGCGTTCGTGCCACTGGCAAGG
AGGCAAAGACCAAGTTCCGTCGCCTGGCGTATATCCCGCCTCAAGCTCCG
GAGCCTCAGAGCGCTTCCGACGCAGAGGGACGGGTGGCGACCCCACCCCC
GATCTACACCAACGAAGACGAAGGATACAGTATCGTCCACTGTCTGCCAT
TGACTGGCCGCACGCATCAGATCCGCGTGCATCTCCAGTTCCTCGGACAC
CCGATCTCGAACGATCCCATCTACTCCAATCGCAAAGTCTTCGGACCCGA
TCTCGGAAAGAACGAGACCAGCGACGAGCGCGACAACGAGCTCATTGATA
AGCTATGTAATATTGGCAAGACTGAAGTCCCCGACACCGTAAGCTATCGG
ACACACCTTACCACAGTGCCTCTGGTACCGCCAGGCACGGACAACTCTGT
TGTGGAGGAGATAATGTCGCGCGAGCACGAGGCCGCCGTGGAGAGATACC
ACAAGCGCAAAGGCGAGATGTTATCTGGCGAGAGATGCAAGATCTGCGAC
ACAGAGCTCTACTCGGACCCTAGACCTGAGGATCTAGGCATCTTCCTCCA
CGCCGCGGCGTACTCTGACAAAGAGGATGGCTGGAAATACACTAGCAAGA
TGCCTACCTGGGCTCTGCCGCCTGATGGCGTGGAGGGACCGCGCGAGATG
CCCGACTGGGTGTTTGTTCCCGAGGAAGAGGAGATTGTTATCGGACATGC
TGTCTTGCCTGGCGCGGAGGACGGCTCGGAGTCGAATATCCCTGCTCTTG
TGCAGGGTGTCGGCCTAGTCGACATTTCGTCTGGTAGGAAGGCAGATGCC
GCTGCGCAGGCGACTGCTTGAATGTCTCTCGTGCCCGTCGACACCACTCT
GCAAGTCCCACCTCCTGATCCGGTTCAGAAGCCCCCTGAGGTGGCCATCA
CGCCCTGTGACCCATGGCCTGCACCATACTATTTTGAAGGCGGCTTGCGC
CGGGTGAAGCCCTACCACTACACCTACAACACTTTTTGCAAGGAGCGCTG
GCGGGGTCGTGAATTGGTGGACATTTTCCTGTCGGAGTTTCGCGACCGTC
CCGCAGAGTACTAC
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
Vocabulary: Molecular Function
TermDefinition
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC10864_011435ATCC10864_011435Aspergillus niger ATCC 10864gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_011435-T1ATCC10864_011435-T1-proteinAspergillus niger ATCC 10864polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_011435-T1.cdsATCC10864_011435-T1.cdsAspergillus niger ATCC 10864CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_011435-T1.exon2ATCC10864_011435-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_011435-T1.exon1ATCC10864_011435-T1.exon1Aspergillus niger ATCC 10864exon


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR006224
InterProIPR020103
InterProIPR002942
InterProIPR006145
InterProIPR006225
PFAMPF00849
Properties
Property NameValue
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000282supercontigMCQH01000282:300148..301770 -
Powered by Drupal