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ATCC10864_011475-T1, ATCC10864_011475-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_011475-T1
Unique NameATCC10864_011475-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000282:459611..460883-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_011475-T1 ID=ATCC10864_011475-T1|Name=ATCC10864_011475-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1273bp|location=Sequence derived from alignment at MCQH01000282:459611..460883- (Aspergillus niger ATCC 10864)
ATGACTGCCGACACCGATACTCAGAATGAGTACGACGATGGGCTTCCGGG
CCCCGGAGCGCCCACGCCACTCTCTTCCCTGGAGGTGAGCAATTCAAACG
GCAAAATAATATATGTGATGACGGGTAGGTGAAGTGCATGTACTGATGCT
CTTCGTAACAGGGTGTCTCGGGCCTGACAAGTAGGGATATTAAGCTGTTT
GTTGATGCTGGATACAACACTGTTGAGTCGGTTGCATATACGTACGTCTA
TCCTTTGCCAGTCTGCTTCCGTGCCATCGCCCCTTTTTCAGTTCTGCTCA
CAAGCATGTTCTTGATTATGGTACAGGCCAAAACGTTTGTTGGAACAAAT
CAAGGGTATTTCGGAACAGAAAGCCACGAAAGTCCTGGTTGAGGGTGAGT
ATTGCTCTTGTGGCATTGGAACTCGTTCGCGAGGATCTTGTCTGACTCAA
TGAATTTGTAGCTATGAAGCTTGTACCGATGGGCTTTACCACCGCGACCG
AAATGCATGCGCGACGAAACGAACTTATCTCAATTACGACAGGCTCGAAA
CAGTTAGACACCCTTCTTGGAGGTGGCATTGAGACAGGCTCTATCACAGA
GATCTTTGGAGAATTCAGGACAGGAAAAAGTCAGATATGTCATACACTCG
CTGTGACTTGCCAATTGCCTTTTGATATGGGCGGAGGAGAAGGAAAATGC
CTATACATTGACACAGAAGGTACCTTCCGACCAGTGCGTCTGTTGGCGGT
TGCACAGCGATACGGGCTGGTGGGAGAGGAGGTGCTGGATAATGTGGCAT
ACGCTCGTGCGTACAACTCAGACCATCAACTTCAGCTACTCAACCAAGCT
TCTCAGATGATGTGTGAGACTCGGTTCTCGCTCCTTGTCGTTGATTCTGC
CACTTCTCTGTACCGGACGGACTTCAACGGCCGTGGTGAATTGTCGTCGA
GACAAACACATCTCGCGAAGTTCATGCGTACTCTGCAGCGCCTCGCTGAT
GAGTTTGGTATTGCGGTCGTCATTACGAACCAGGTCGTTGCCCAGGTGGA
TGGTGGCCCGAGTGCAATGTTCAATCCCGATCCAAAGAAGCCAATCGGTG
GTAACATTATTGCGCATGCAAGTACGACGCGGCTAAGTTTGAAGAAAGGA
CGGGGCGAGACTCGGGTCTGTAAGATCTACGATAGCCCATGTCTCCCTGA
GAGCGATTGTTTGTTCGCTATTAATGAGGATGGTATCGGGGACCCGAACC
CCAAGGACTTGGAGAATGACTGA
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Coding sequence (CDS) from alignment at MCQH01000282:459611..460883-

>ATCC10864_011475-T1 ID=ATCC10864_011475-T1|Name=ATCC10864_011475-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=4176bp|location=Sequence derived from alignment at MCQH01000282:459611..460883- (Aspergillus niger ATCC 10864)
CTATGAAGCTTGTACCGATGGGCTTTACCACCGCGACCGAAATGCATGCG
CGACGAAACGAACTTATCTCAATTACGACAGGCTCGAAACAGTTAGACAC
CCTTCTTGGAGGTGGCATTGAGACAGGCTCTATCACAGAGATCTTTGGAG
AATTCAGGACAGGAAAAAGTCAGATATGTCATACACTCGCTGTGACTTGC
CAATTGCCTTTTGATATGGGCGGAGGAGAAGGAAAATGCCTATACATTGA
CACAGAAGGTACCTTCCGACCAGTGCGTCTGTTGGCGGTTGCACAGCGAT
ACGGGCTGGTGGGAGAGGAGGTGCTGGATAATGTGGCATACGCTCGTGCG
TACAACTCAGACCATCAACTTCAGCTACTCAACCAAGCTTCTCAGATGAT
GTGTGAGACTCGGTTCTCGCTCCTTGTCGTTGATTCTGCCACTTCTCTGT
ACCGGACGGACTTCAACGGCCGTGGTGAATTGTCGTCGAGACAAACACAT
CTCGCGAAGTTCATGCGTACTCTGCAGCGCCTCGCTGATGAGTTTGGTAT
TGCGGTCGTCATTACGAACCAGGTCGTTGCCCAGGTGGATGGTGGCCCGA
GTGCAATGTTCAATCCCGATCCAAAGAAGCCAATCGGTGGTAACATTATT
GCGCATGCAAGTACGACGCGGCTAAGTTTGAAGAAAGGACGGGGCGAGAC
TCGGGTCTGTAAGATCTACGATAGCCCATGTCTCCCTGAGAGCGATTGTT
TGTTCGCTATTAATGAGGATGGTATCGGGGACCCGAACCCCAAGGACTTG
GAGAATGACTGAGCCAAAACGTTTGTTGGAACAAATCAAGGGTATTTCGG
AACAGAAAGCCACGAAAGTCCTGGTTGAGGGGTGTCTCGGGCCTGACAAG
TAGGGATATTAAGCTGTTTGTTGATGCTGGATACAACACTGTTGAGTCGG
TTGCATATACATGACTGCCGACACCGATACTCAGAATGAGTACGACGATG
GGCTTCCGGGCCCCGGAGCGCCCACGCCACTCTCTTCCCTGGAGCTATGA
AGCTTGTACCGATGGGCTTTACCACCGCGACCGAAATGCATGCGCGACGA
AACGAACTTATCTCAATTACGACAGGCTCGAAACAGTTAGACACCCTTCT
TGGAGGTGGCATTGAGACAGGCTCTATCACAGAGATCTTTGGAGAATTCA
GGACAGGAAAAAGTCAGATATGTCATACACTCGCTGTGACTTGCCAATTG
CCTTTTGATATGGGCGGAGGAGAAGGAAAATGCCTATACATTGACACAGA
AGGTACCTTCCGACCAGTGCGTCTGTTGGCGGTTGCACAGCGATACGGGC
TGGTGGGAGAGGAGGTGCTGGATAATGTGGCATACGCTCGTGCGTACAAC
TCAGACCATCAACTTCAGCTACTCAACCAAGCTTCTCAGATGATGTGTGA
GACTCGGTTCTCGCTCCTTGTCGTTGATTCTGCCACTTCTCTGTACCGGA
CGGACTTCAACGGCCGTGGTGAATTGTCGTCGAGACAAACACATCTCGCG
AAGTTCATGCGTACTCTGCAGCGCCTCGCTGATGAGTTTGGTATTGCGGT
CGTCATTACGAACCAGGTCGTTGCCCAGGTGGATGGTGGCCCGAGTGCAA
TGTTCAATCCCGATCCAAAGAAGCCAATCGGTGGTAACATTATTGCGCAT
GCAAGTACGACGCGGCTAAGTTTGAAGAAAGGACGGGGCGAGACTCGGGT
CTGTAAGATCTACGATAGCCCATGTCTCCCTGAGAGCGATTGTTTGTTCG
CTATTAATGAGGATGGTATCGGGGACCCGAACCCCAAGGACTTGGAGAAT
GACTGAGCCAAAACGTTTGTTGGAACAAATCAAGGGTATTTCGGAACAGA
AAGCCACGAAAGTCCTGGTTGAGGGGTGTCTCGGGCCTGACAAGTAGGGA
TATTAAGCTGTTTGTTGATGCTGGATACAACACTGTTGAGTCGGTTGCAT
ATACATGACTGCCGACACCGATACTCAGAATGAGTACGACGATGGGCTTC
CGGGCCCCGGAGCGCCCACGCCACTCTCTTCCCTGGAGCTATGAAGCTTG
TACCGATGGGCTTTACCACCGCGACCGAAATGCATGCGCGACGAAACGAA
CTTATCTCAATTACGACAGGCTCGAAACAGTTAGACACCCTTCTTGGAGG
TGGCATTGAGACAGGCTCTATCACAGAGATCTTTGGAGAATTCAGGACAG
GAAAAAGTCAGATATGTCATACACTCGCTGTGACTTGCCAATTGCCTTTT
GATATGGGCGGAGGAGAAGGAAAATGCCTATACATTGACACAGAAGGTAC
CTTCCGACCAGTGCGTCTGTTGGCGGTTGCACAGCGATACGGGCTGGTGG
GAGAGGAGGTGCTGGATAATGTGGCATACGCTCGTGCGTACAACTCAGAC
CATCAACTTCAGCTACTCAACCAAGCTTCTCAGATGATGTGTGAGACTCG
GTTCTCGCTCCTTGTCGTTGATTCTGCCACTTCTCTGTACCGGACGGACT
TCAACGGCCGTGGTGAATTGTCGTCGAGACAAACACATCTCGCGAAGTTC
ATGCGTACTCTGCAGCGCCTCGCTGATGAGTTTGGTATTGCGGTCGTCAT
TACGAACCAGGTCGTTGCCCAGGTGGATGGTGGCCCGAGTGCAATGTTCA
ATCCCGATCCAAAGAAGCCAATCGGTGGTAACATTATTGCGCATGCAAGT
ACGACGCGGCTAAGTTTGAAGAAAGGACGGGGCGAGACTCGGGTCTGTAA
GATCTACGATAGCCCATGTCTCCCTGAGAGCGATTGTTTGTTCGCTATTA
ATGAGGATGGTATCGGGGACCCGAACCCCAAGGACTTGGAGAATGACTGA
GCCAAAACGTTTGTTGGAACAAATCAAGGGTATTTCGGAACAGAAAGCCA
CGAAAGTCCTGGTTGAGGGGTGTCTCGGGCCTGACAAGTAGGGATATTAA
GCTGTTTGTTGATGCTGGATACAACACTGTTGAGTCGGTTGCATATACAT
GACTGCCGACACCGATACTCAGAATGAGTACGACGATGGGCTTCCGGGCC
CCGGAGCGCCCACGCCACTCTCTTCCCTGGAGCTATGAAGCTTGTACCGA
TGGGCTTTACCACCGCGACCGAAATGCATGCGCGACGAAACGAACTTATC
TCAATTACGACAGGCTCGAAACAGTTAGACACCCTTCTTGGAGGTGGCAT
TGAGACAGGCTCTATCACAGAGATCTTTGGAGAATTCAGGACAGGAAAAA
GTCAGATATGTCATACACTCGCTGTGACTTGCCAATTGCCTTTTGATATG
GGCGGAGGAGAAGGAAAATGCCTATACATTGACACAGAAGGTACCTTCCG
ACCAGTGCGTCTGTTGGCGGTTGCACAGCGATACGGGCTGGTGGGAGAGG
AGGTGCTGGATAATGTGGCATACGCTCGTGCGTACAACTCAGACCATCAA
CTTCAGCTACTCAACCAAGCTTCTCAGATGATGTGTGAGACTCGGTTCTC
GCTCCTTGTCGTTGATTCTGCCACTTCTCTGTACCGGACGGACTTCAACG
GCCGTGGTGAATTGTCGTCGAGACAAACACATCTCGCGAAGTTCATGCGT
ACTCTGCAGCGCCTCGCTGATGAGTTTGGTATTGCGGTCGTCATTACGAA
CCAGGTCGTTGCCCAGGTGGATGGTGGCCCGAGTGCAATGTTCAATCCCG
ATCCAAAGAAGCCAATCGGTGGTAACATTATTGCGCATGCAAGTACGACG
CGGCTAAGTTTGAAGAAAGGACGGGGCGAGACTCGGGTCTGTAAGATCTA
CGATAGCCCATGTCTCCCTGAGAGCGATTGTTTGTTCGCTATTAATGAGG
ATGGTATCGGGGACCCGAACCCCAAGGACTTGGAGAATGACTGAGCCAAA
ACGTTTGTTGGAACAAATCAAGGGTATTTCGGAACAGAAAGCCACGAAAG
TCCTGGTTGAGGGGTGTCTCGGGCCTGACAAGTAGGGATATTAAGCTGTT
TGTTGATGCTGGATACAACACTGTTGAGTCGGTTGCATATACATGACTGC
CGACACCGATACTCAGAATGAGTACGACGATGGGCTTCCGGGCCCCGGAG
CGCCCACGCCACTCTCTTCCCTGGAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006259DNA metabolic process
GO:0006281DNA repair
GO:1990426mitotic recombination-dependent replication fork processing
GO:0000724double-strand break repair via homologous recombination
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0008094DNA-dependent ATPase activity
GO:0000166nucleotide binding
GO:0000150recombinase activity
GO:0003697single-stranded DNA binding
GO:0003690double-stranded DNA binding
GO:0005524ATP binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RHP51ATCC10864_011475Aspergillus niger ATCC 10864gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_011475-T1ATCC10864_011475-T1-proteinAspergillus niger ATCC 10864polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_011475-T1.cdsATCC10864_011475-T1.cdsAspergillus niger ATCC 10864CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_011475-T1.exon4ATCC10864_011475-T1.exon4Aspergillus niger ATCC 10864exon
ATCC10864_011475-T1.exon3ATCC10864_011475-T1.exon3Aspergillus niger ATCC 10864exon
ATCC10864_011475-T1.exon2ATCC10864_011475-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_011475-T1.exon1ATCC10864_011475-T1.exon1Aspergillus niger ATCC 10864exon


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR020588
PFAMPF00154
InterProIPR027417
InterProIPR010995
PFAMPF14520
InterProIPR016467
PFAMPF13481
InterProIPR013632
InterProIPR011941
InterProIPR020587
InterProIPR003593
InterProIPR033925
PFAMPF08423
Properties
Property NameValue
NoteantiSMASH:Cluster_1000282.2
ProductRecA recombinase Rhp51
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000282supercontigMCQH01000282:459611..460883 -
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