You are here

Home

M747DRAFT_149696-T1, M747DRAFT_149696-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_149696-T1
Unique NameM747DRAFT_149696-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851904.1:71081..72183-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_149696-T1 ID=M747DRAFT_149696-T1|Name=M747DRAFT_149696-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1103bp|location=Sequence derived from alignment at KZ851904.1:71081..72183- (Aspergillus niger ATCC 13496)
CGGACTCCGACTCCGATTCACAGCCTAAACCGTTGAGTATTAAGATCCCA
CTCGGAGCAACATGCCTGCACCCACAGCTTTACGGCAAACTGCCGAAGTA
GCAATGGCAGAGACGCCTGTTGCGCCTACTATGTCAGGTCAGTCCCCGCC
AGCGCTTTACGGGAACCCGACTGGGTGGCCATCCTAACGTCCATTAGAGC
AAGATGAGGAAATTTTGATCGACGCCCAAACGTCGGCAGATCAGGTCTCT
GCAGGACTCGCGCCTGAGATTGAGCCTACTCAAGACAGCGATATGCGTAT
TGACGAAGAGGGACGGCCCCTCTTCACACCAGCAAAAGACACTAGCAGGG
TATATCGAGTTGAAAGCAGGAAGGTTCCTGTACCACCGCATAGGATGACT
CCATTGAAGGCTAGCTGGGCACGCATCTATCCCCCGCTTGTCGAACACCT
CAAACTTCAAGTGCGGATGAACATCAAGAACCGAGCTGTGGAGCTACGTA
CGTCACGATTCACGACCGATACGGAAGCCCTGCAGAAGGGCGAGGACTTC
GTCAAAGCTTTTACTCTTGGATTTGATGTCGACGACGCTATCGCACTTCT
CAGATTGGATGATCTTTACATACGTTCATTCGAGATTCGGGATATCAAAG
CCCTTAACGGAGAGCACCTCAGTCGTGCAATTGGACGCTGTGCTGGTAAA
GATGGGCGAACAAAGTTTGCTATAGAGAACGCTACTCGGACAAGAATCGT
CATTGCAGACCAGAAGATTCACTTGCTAGGCGCAGTGAAGAATGTCGACT
GTGCCCAGCAGGCCATTGTTAGCTTGATTCTTGGCAGTCCACCGGTCAGT
AACCTTGTGCCAATCCTTTCTATTGTCGTTTCAGAAGATGCAACATCTGC
TAACTCCTCAATAGGGCAAAGTGTATGGGAACCTTCGTAAGGTGGCTTCT
CGCATGAAGGAGCGTTTTTAAGAAAACGGACCGTCAGCATTATGGGAACT
ACGGTCAAGGGTGTCTCTGCCTCTACCAGGATTTTTTCTTTTTTCATGAC
ATGGTATCGGCGTTAGGGGTTGTGGCACATGATTTGGATAGAGCATAATG
GAT
back to top

Coding sequence (CDS) from alignment at KZ851904.1:71081..72183-

>M747DRAFT_149696-T1 ID=M747DRAFT_149696-T1|Name=M747DRAFT_149696-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=2340bp|location=Sequence derived from alignment at KZ851904.1:71081..72183- (Aspergillus niger ATCC 13496)
GGCAAAGTGTATGGGAACCTTCGTAAGGTGGCTTCTCGCATGAAGGAGCG
TTTTTAAAGCAAGATGAGGAAATTTTGATCGACGCCCAAACGTCGGCAGA
TCAGGTCTCTGCAGGACTCGCGCCTGAGATTGAGCCTACTCAAGACAGCG
ATATGCGTATTGACGAAGAGGGACGGCCCCTCTTCACACCAGCAAAAGAC
ACTAGCAGGGTATATCGAGTTGAAAGCAGGAAGGTTCCTGTACCACCGCA
TAGGATGACTCCATTGAAGGCTAGCTGGGCACGCATCTATCCCCCGCTTG
TCGAACACCTCAAACTTCAAGTGCGGATGAACATCAAGAACCGAGCTGTG
GAGCTACGTACGTCACGATTCACGACCGATACGGAAGCCCTGCAGAAGGG
CGAGGACTTCGTCAAAGCTTTTACTCTTGGATTTGATGTCGACGACGCTA
TCGCACTTCTCAGATTGGATGATCTTTACATACGTTCATTCGAGATTCGG
GATATCAAAGCCCTTAACGGAGAGCACCTCAGTCGTGCAATTGGACGCTG
TGCTGGTAAAGATGGGCGAACAAAGTTTGCTATAGAGAACGCTACTCGGA
CAAGAATCGTCATTGCAGACCAGAAGATTCACTTGCTAGGCGCAGTGAAG
AATGTCGACTGTGCCCAGCAGGCCATTGTTAGCTTGATTCTTGGCAGTCC
ACCGATGCCTGCACCCACAGCTTTACGGCAAACTGCCGAAGTAGCAATGG
CAGAGACGCCTGTTGCGCCTACTATGTCAGGGCAAAGTGTATGGGAACCT
TCGTAAGGTGGCTTCTCGCATGAAGGAGCGTTTTTAAAGCAAGATGAGGA
AATTTTGATCGACGCCCAAACGTCGGCAGATCAGGTCTCTGCAGGACTCG
CGCCTGAGATTGAGCCTACTCAAGACAGCGATATGCGTATTGACGAAGAG
GGACGGCCCCTCTTCACACCAGCAAAAGACACTAGCAGGGTATATCGAGT
TGAAAGCAGGAAGGTTCCTGTACCACCGCATAGGATGACTCCATTGAAGG
CTAGCTGGGCACGCATCTATCCCCCGCTTGTCGAACACCTCAAACTTCAA
GTGCGGATGAACATCAAGAACCGAGCTGTGGAGCTACGTACGTCACGATT
CACGACCGATACGGAAGCCCTGCAGAAGGGCGAGGACTTCGTCAAAGCTT
TTACTCTTGGATTTGATGTCGACGACGCTATCGCACTTCTCAGATTGGAT
GATCTTTACATACGTTCATTCGAGATTCGGGATATCAAAGCCCTTAACGG
AGAGCACCTCAGTCGTGCAATTGGACGCTGTGCTGGTAAAGATGGGCGAA
CAAAGTTTGCTATAGAGAACGCTACTCGGACAAGAATCGTCATTGCAGAC
CAGAAGATTCACTTGCTAGGCGCAGTGAAGAATGTCGACTGTGCCCAGCA
GGCCATTGTTAGCTTGATTCTTGGCAGTCCACCGATGCCTGCACCCACAG
CTTTACGGCAAACTGCCGAAGTAGCAATGGCAGAGACGCCTGTTGCGCCT
ACTATGTCAGGGCAAAGTGTATGGGAACCTTCGTAAGGTGGCTTCTCGCA
TGAAGGAGCGTTTTTAAAGCAAGATGAGGAAATTTTGATCGACGCCCAAA
CGTCGGCAGATCAGGTCTCTGCAGGACTCGCGCCTGAGATTGAGCCTACT
CAAGACAGCGATATGCGTATTGACGAAGAGGGACGGCCCCTCTTCACACC
AGCAAAAGACACTAGCAGGGTATATCGAGTTGAAAGCAGGAAGGTTCCTG
TACCACCGCATAGGATGACTCCATTGAAGGCTAGCTGGGCACGCATCTAT
CCCCCGCTTGTCGAACACCTCAAACTTCAAGTGCGGATGAACATCAAGAA
CCGAGCTGTGGAGCTACGTACGTCACGATTCACGACCGATACGGAAGCCC
TGCAGAAGGGCGAGGACTTCGTCAAAGCTTTTACTCTTGGATTTGATGTC
GACGACGCTATCGCACTTCTCAGATTGGATGATCTTTACATACGTTCATT
CGAGATTCGGGATATCAAAGCCCTTAACGGAGAGCACCTCAGTCGTGCAA
TTGGACGCTGTGCTGGTAAAGATGGGCGAACAAAGTTTGCTATAGAGAAC
GCTACTCGGACAAGAATCGTCATTGCAGACCAGAAGATTCACTTGCTAGG
CGCAGTGAAGAATGTCGACTGTGCCCAGCAGGCCATTGTTAGCTTGATTC
TTGGCAGTCCACCGATGCCTGCACCCACAGCTTTACGGCAAACTGCCGAA
GTAGCAATGGCAGAGACGCCTGTTGCGCCTACTATGTCAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PNO1M747DRAFT_149696Aspergillus niger ATCC 13496gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_149696-T1M747DRAFT_149696-T1-proteinAspergillus niger ATCC 13496polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_149696-T1.cdsM747DRAFT_149696-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_149696-T1.utr3p1M747DRAFT_149696-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_149696-T1.exon3M747DRAFT_149696-T1.exon3Aspergillus niger ATCC 13496exon
M747DRAFT_149696-T1.exon2M747DRAFT_149696-T1.exon2Aspergillus niger ATCC 13496exon
M747DRAFT_149696-T1.exon1M747DRAFT_149696-T1.exon1Aspergillus niger ATCC 13496exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_149696-T1.utr5p1M747DRAFT_149696-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09264SQJ
DBxrefInterPro:IPR036612
Productpre-rRNA-processing protein pno1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851904.1supercontigKZ851904.1:71081..72183 -
Powered by Drupal