You are here

Home

M747DRAFT_246841-T1, M747DRAFT_246841-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_246841-T1
Unique NameM747DRAFT_246841-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851947.1:81762..82773+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_246841-T1 ID=M747DRAFT_246841-T1|Name=M747DRAFT_246841-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1012bp|location=Sequence derived from alignment at KZ851947.1:81762..82773+ (Aspergillus niger ATCC 13496)
ATGGGTGTCACCTTCGACAAGTGCGAGACCCGCCCGGCCAACATTGACGC
CATCCTCAATGGCCTCGACCGCTACAACCCCGAGACCACCACTGTCTTCC
AGGACTATGTCGCCCAGCAGTGCGAGGACCGCACCTTCGACTGCTACGCC
AACCTGGCCTTGCTGAAGTTGTGAGTTCATGCGCCTTTCTATCCAGTTCA
AAACACTTTCAGCCGAAACATAAAGAGCTCCGACGCGGGGAACCATTTTG
GTTTTATGTGATGAAGAATCTTATATCATTATCACGTTTCCTATTACCTG
ACACCCTACTTTGGGGGATGTCGAGACTCCAATTCTCCTGAAACAAAACC
ATGATCTCAACTTTTATTCTATCGCATGTACATCATACCTGAATAGCGAT
GCTAACCCCTTCACGCCCTCTGACAGGTACCAGTTCAACCCCCACCTTCT
CCAGGCGGAGACCGTCACCAACGTCCTCGTCAAGGCCCTGACTGTCTTCC
CCTCTCCCGCTTTCTCCCTCTGCCTTGCTCTTCTCCCCGCCCACACTCAG
CCCTTCCAGGCCTCCGACGCTGAGGCCCAGGCCGCCGCCCAGACCTCCGA
CTTCGTCGAGTCGATCCAGAAGCTCGCCCGCCTCTCCACCCTCCTCGAGT
CTGCCCAGTACACCCAGTTCTGGTCCACCCTGAACTCGGACGACCTGTAC
GCTGACCTTGTTGCCGACGTTGCCGGATTCGAGGAGCTCGTGCGCATCCG
CATTGCCGTCGAGGTCGGCAAGACCTTCCGTGAGATCCCTGCCGAGGTTC
TGGAGCAGTGGCTCGACCTGCGCAGCCGCGAGGCTCTCGAGAAGTTCGTC
GCCGAGGTCTGCAGCTGGGAGGTTGACAAGTCTGGCGCCAACACCGTGAT
CAAGGTGCCCACCAACAAGGAGAACGAGGCCCGCAGCGAGGTCAAGAGCG
AGCGCGTCGGCGTCGACATGTTCGGCCGTGTCATCCGCCGTGGTTTCGAG
CAGGCTGCATGA
back to top

Coding sequence (CDS) from alignment at KZ851947.1:81762..82773+

>M747DRAFT_246841-T1 ID=M747DRAFT_246841-T1|Name=M747DRAFT_246841-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=1512bp|location=Sequence derived from alignment at KZ851947.1:81762..82773+ (Aspergillus niger ATCC 13496)
ATGGGTGTCACCTTCGACAAGTGCGAGACCCGCCCGGCCAACATTGACGC
CATCCTCAATGGCCTCGACCGCTACAACCCCGAGACCACCACTGTCTTCC
AGGACTATGTCGCCCAGCAGTGCGAGGACCGCACCTTCGACTGCTACGCC
AACCTGGCCTTGCTGAAGTTGTACCAGTTCAACCCCCACCTTCTCCAGGC
GGAGACCGTCACCAACGTCCTCGTCAAGGCCCTGACTGTCTTCCCCTCTC
CCGCTTTCTCCCTCTGCCTTGCTCTTCTCCCCGCCCACACTCAGCCCTTC
CAGGCCTCCGACGCTGAGGCCCAGGCCGCCGCCCAGACCTCCGACTTCGT
CGAGTCGATCCAGAAGCTCGCCCGCCTCTCCACCCTCCTCGAGTCTGCCC
AGTACACCCAGTTCTGGTCCACCCTGAACTCGGACGACCTGTACGCTGAC
CTTGTTGCCGACGTTGCCGGATTCGAGGAGCTCGTGCGCATCCGCATTGC
CGTCGAGGTCGGCAAGACCTTCCGTGAGATCCCTGCCGAGGTTCTGGAGC
AGTGGCTCGACCTGCGCAGCCGCGAGGCTCTCGAGAAGTTCGTCGCCGAG
GTCTGCAGCTGGGAGGTTGACAAGTCTGGCGCCAACACCGTGATCAAGGT
GCCCACCAACAAGGAGAACGAGGCCCGCAGCGAGGTCAAGAGCGAGCGCG
TCGGCGTCGACATGTTCGGCCGTGTCATCCGCCGTGGTTTCGAGCAGGCT
GCATGAATGGGTGTCACCTTCGACAAGTGCGAGACCCGCCCGGCCAACAT
TGACGCCATCCTCAATGGCCTCGACCGCTACAACCCCGAGACCACCACTG
TCTTCCAGGACTATGTCGCCCAGCAGTGCGAGGACCGCACCTTCGACTGC
TACGCCAACCTGGCCTTGCTGAAGTTGTACCAGTTCAACCCCCACCTTCT
CCAGGCGGAGACCGTCACCAACGTCCTCGTCAAGGCCCTGACTGTCTTCC
CCTCTCCCGCTTTCTCCCTCTGCCTTGCTCTTCTCCCCGCCCACACTCAG
CCCTTCCAGGCCTCCGACGCTGAGGCCCAGGCCGCCGCCCAGACCTCCGA
CTTCGTCGAGTCGATCCAGAAGCTCGCCCGCCTCTCCACCCTCCTCGAGT
CTGCCCAGTACACCCAGTTCTGGTCCACCCTGAACTCGGACGACCTGTAC
GCTGACCTTGTTGCCGACGTTGCCGGATTCGAGGAGCTCGTGCGCATCCG
CATTGCCGTCGAGGTCGGCAAGACCTTCCGTGAGATCCCTGCCGAGGTTC
TGGAGCAGTGGCTCGACCTGCGCAGCCGCGAGGCTCTCGAGAAGTTCGTC
GCCGAGGTCTGCAGCTGGGAGGTTGACAAGTCTGGCGCCAACACCGTGAT
CAAGGTGCCCACCAACAAGGAGAACGAGGCCCGCAGCGAGGTCAAGAGCG
AGCGCGTCGGCGTCGACATGTTCGGCCGTGTCATCCGCCGTGGTTTCGAG
CAGGCTGCATGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005852eukaryotic translation initiation factor 3 complex
Vocabulary: Biological Process
TermDefinition
GO:0006446regulation of translational initiation
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0043022ribosome binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
M747DRAFT_246841M747DRAFT_246841Aspergillus niger ATCC 13496gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_246841-T1.exon1M747DRAFT_246841-T1.exon1Aspergillus niger ATCC 13496exon
M747DRAFT_246841-T1.exon2M747DRAFT_246841-T1.exon2Aspergillus niger ATCC 13496exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_246841-T1.cdsM747DRAFT_246841-T1.cdsAspergillus niger ATCC 13496CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_246841-T1M747DRAFT_246841-T1-proteinAspergillus niger ATCC 13496polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR016024
DBxrefInterPro:IPR036390
DBxrefInterPro:IPR000717
DBxrefInterPro:IPR009374
DBxrefInterPro:IPR016020
DBxrefInterPro:IPR036388
DBxrefInterPro:IPR033464
DBxrefPFAM:PF10075
Producteukaryotic translation initiation factor 3 subunit EifCk
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851947.1supercontigKZ851947.1:81762..82773 +
Powered by Drupal