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M747DRAFT_251468-T1, M747DRAFT_251468-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_251468-T1
Unique NameM747DRAFT_251468-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851899.1:1631115..1632937+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_251468-T1 ID=M747DRAFT_251468-T1|Name=M747DRAFT_251468-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1823bp|location=Sequence derived from alignment at KZ851899.1:1631115..1632937+ (Aspergillus niger ATCC 13496)
ATGGCTGCCGCACCATCTTCTCGTCCCTTTGAATACCTCGAAAGCCTTGC
TGGCACTGTCTTCTACAAACTTTACCAGCAGCCATCAACGGCTCTCGCCA
TTTTCAGGCGCATGCTGCCTGATCTGGGTATGTGTCGCATGTGCATTCAC
CACTCCGGTGCTTCATCAACTAACTGCCTGACTAGCAAAATGCTTTGTCA
TGGCACTTCTCTACCTAAAGGATCCGCTCCCCGCGGCGGATCTGGAGGCT
TGGGTTAAATCGGAGAGCTTGAAGTAAGTGCGGGTCAAGCACCCTGGGAA
GGTTTCCGCAGTGATTGTGGTTAACGTGAGCCTCACACAGAGAACGCGAC
AATGCACTCTCCATCCTAGGAAGACTGCATATTTTATCCAACACTGTTAC
GGCGGATAATGTCCGCGCCTACAAAGTCACCGATCCCTTCGCCACTTCAT
TGCGACACGCTCTCACCGGCGCCGACCAAACACAATCTTTTGGCGTCCTT
TCACAAGTGCCTGCTGGCTCGGAAGTCTCGATCCCCGAACTTGATGAGTA
TGCGCGACGACAGTGGGAAGGAGTGCTGGGATACATGGTCGGTACTGGAG
GCATGGGAGGTCCCCAAGTGACCCTCAGCAAAGGCGTGAAGGAGCTCCTG
CAGGCGGGTCATCTGGTCGAGATCCGAGATCGTCGCGTCGAAATCACCCA
GGATGGGTTTGCCTTTGTCCTGCAAGATGTCAGCACGCAGGTGTGGCATA
TCTTGATTCTTTACGTCGAGAGCGCCAGCGCCATCAAGATGGACAGTGTC
GAAGTCCTCTCGTTCGTGTTCCTTCTCAGCAGTCTCGAACTCGGAAAATC
ATATGAAAAGAACCACCTCAGTTCGAAACAACTGCGCATGCTGACCGACC
TTGCCGACTTTGGTATCGTCTATCAAGAATCGCCGGATGCACCGCGTTTC
TACCCCACCCGTCTTGCAACCACCCTCACGTCCGACTCCAGCGCCTTGAG
CAACCCACTCTTGGGTTCCCTCTCCGGTCCTGCTGGCGAAGCCTCCAGCA
AAGCGGGTACGGGCTTCATCATTATCGAAACCAACTACCGTGTATACGCA
TACACCTCGTCTCCCCTACAGATCTCCCTGATTGCTCTGTTCACCACACT
GAAATACCGCTTCCCCAACCTCATCACCGGCAAAATCACCCGCCAATCCG
TCCGCCGGGCCGTCGAGATGGGCATCACCGCCGACCAAATCATTTCCTAT
CTCTCTACTCACGCCCACCCGCAAATGCGCAAGCACAACGTCTCCCGCTC
GACCTCAAACCAGGCCGGGATCCCCCCGTCAGTCCTCCCGCCAACCGTGG
TGGACCAGATTCGACTTTGGCAGCTGGAGCGGGACCGTGTCAAAGCTACG
TCCGGATTCCTTTTCAAGGACTTTGTCAGTCTGGCAGAATACGAGGCGCC
ATGTCGCTATGCCGAAGAAATCGGTGTTCTGGCATGGAAGTCGGATCGCA
AACGCATGTTCTTCGTGACGAGGCATGAACAAGTGGCTGCGTTCTTAAGG
AGCCGGAAATAAGTCGAGGGTTCATCGACCCCACCAAAAGGTGTTGGCTG
AAATGGATTATTGGGCTAAAAAAAAGGAATTAATTATTACTGCAACTTTT
GGCTTCTTGCGTTGCATAGAGGTGCGGCAGCTTGGCGTTCTGGTTTCTCG
GGACATTTCATGAAACTGATGATATATAACCCACCCCAAATCGGAGAATG
CGATTGTGGGGGTGACGGCTTACAAACTGTATAATAGCTGGGAAACTCAA
AATAGAAGAAAAGGAAGTGTGAC
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Coding sequence (CDS) from alignment at KZ851899.1:1631115..1632937+

>M747DRAFT_251468-T1 ID=M747DRAFT_251468-T1|Name=M747DRAFT_251468-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=4311bp|location=Sequence derived from alignment at KZ851899.1:1631115..1632937+ (Aspergillus niger ATCC 13496)
ATGGCTGCCGCACCATCTTCTCGTCCCTTTGAATACCTCGAAAGCCTTGC
TGGCACTGTCTTCTACAAACTTTACCAGCAGCCATCAACGGCTCTCGCCA
TTTTCAGGCGCATGCTGCCTGATCTGGCAAAATGCTTTGTCATGGCACTT
CTCTACCTAAAGGATCCGCTCCCCGCGGCGGATCTGGAGGCTTGGGTTAA
ATCGGAGAGCTTGAAAGAACGCGACAATGCACTCTCCATCCTAGGAAGAC
TGCATATTTTATCCAACACTGTTACGGCGGATAATGTCCGCGCCTACAAA
GTCACCGATCCCTTCGCCACTTCATTGCGACACGCTCTCACCGGCGCCGA
CCAAACACAATCTTTTGGCGTCCTTTCACAAGTGCCTGCTGGCTCGGAAG
TCTCGATCCCCGAACTTGATGAGTATGCGCGACGACAGTGGGAAGGAGTG
CTGGGATACATGGTCGGTACTGGAGGCATGGGAGGTCCCCAAGTGACCCT
CAGCAAAGGCGTGAAGGAGCTCCTGCAGGCGGGTCATCTGGTCGAGATCC
GAGATCGTCGCGTCGAAATCACCCAGGATGGGTTTGCCTTTGTCCTGCAA
GATGTCAGCACGCAGGTGTGGCATATCTTGATTCTTTACGTCGAGAGCGC
CAGCGCCATCAAGATGGACAGTGTCGAAGTCCTCTCGTTCGTGTTCCTTC
TCAGCAGTCTCGAACTCGGAAAATCATATGAAAAGAACCACCTCAGTTCG
AAACAACTGCGCATGCTGACCGACCTTGCCGACTTTGGTATCGTCTATCA
AGAATCGCCGGATGCACCGCGTTTCTACCCCACCCGTCTTGCAACCACCC
TCACGTCCGACTCCAGCGCCTTGAGCAACCCACTCTTGGGTTCCCTCTCC
GGTCCTGCTGGCGAAGCCTCCAGCAAAGCGGGTACGGGCTTCATCATTAT
CGAAACCAACTACCGTGTATACGCATACACCTCGTCTCCCCTACAGATCT
CCCTGATTGCTCTGTTCACCACACTGAAATACCGCTTCCCCAACCTCATC
ACCGGCAAAATCACCCGCCAATCCGTCCGCCGGGCCGTCGAGATGGGCAT
CACCGCCGACCAAATCATTTCCTATCTCTCTACTCACGCCCACCCGCAAA
TGCGCAAGCACAACGTCTCCCGCTCGACCTCAAACCAGGCCGGGATCCCC
CCGTCAGTCCTCCCGCCAACCGTGGTGGACCAGATTCGACTTTGGCAGCT
GGAGCGGGACCGTGTCAAAGCTACGTCCGGATTCCTTTTCAAGGACTTTG
TCAGTCTGGCAGAATACGAGGCGCCATGTCGCTATGCCGAAGAAATCGGT
GTTCTGGCATGGAAGTCGGATCGCAAACGCATGTTCTTCGTGACGAGGCA
TGAACAAGTGGCTGCGTTCTTAAGGAGCCGGAAATAAATGGCTGCCGCAC
CATCTTCTCGTCCCTTTGAATACCTCGAAAGCCTTGCTGGCACTGTCTTC
TACAAACTTTACCAGCAGCCATCAACGGCTCTCGCCATTTTCAGGCGCAT
GCTGCCTGATCTGGCAAAATGCTTTGTCATGGCACTTCTCTACCTAAAGG
ATCCGCTCCCCGCGGCGGATCTGGAGGCTTGGGTTAAATCGGAGAGCTTG
AAAGAACGCGACAATGCACTCTCCATCCTAGGAAGACTGCATATTTTATC
CAACACTGTTACGGCGGATAATGTCCGCGCCTACAAAGTCACCGATCCCT
TCGCCACTTCATTGCGACACGCTCTCACCGGCGCCGACCAAACACAATCT
TTTGGCGTCCTTTCACAAGTGCCTGCTGGCTCGGAAGTCTCGATCCCCGA
ACTTGATGAGTATGCGCGACGACAGTGGGAAGGAGTGCTGGGATACATGG
TCGGTACTGGAGGCATGGGAGGTCCCCAAGTGACCCTCAGCAAAGGCGTG
AAGGAGCTCCTGCAGGCGGGTCATCTGGTCGAGATCCGAGATCGTCGCGT
CGAAATCACCCAGGATGGGTTTGCCTTTGTCCTGCAAGATGTCAGCACGC
AGGTGTGGCATATCTTGATTCTTTACGTCGAGAGCGCCAGCGCCATCAAG
ATGGACAGTGTCGAAGTCCTCTCGTTCGTGTTCCTTCTCAGCAGTCTCGA
ACTCGGAAAATCATATGAAAAGAACCACCTCAGTTCGAAACAACTGCGCA
TGCTGACCGACCTTGCCGACTTTGGTATCGTCTATCAAGAATCGCCGGAT
GCACCGCGTTTCTACCCCACCCGTCTTGCAACCACCCTCACGTCCGACTC
CAGCGCCTTGAGCAACCCACTCTTGGGTTCCCTCTCCGGTCCTGCTGGCG
AAGCCTCCAGCAAAGCGGGTACGGGCTTCATCATTATCGAAACCAACTAC
CGTGTATACGCATACACCTCGTCTCCCCTACAGATCTCCCTGATTGCTCT
GTTCACCACACTGAAATACCGCTTCCCCAACCTCATCACCGGCAAAATCA
CCCGCCAATCCGTCCGCCGGGCCGTCGAGATGGGCATCACCGCCGACCAA
ATCATTTCCTATCTCTCTACTCACGCCCACCCGCAAATGCGCAAGCACAA
CGTCTCCCGCTCGACCTCAAACCAGGCCGGGATCCCCCCGTCAGTCCTCC
CGCCAACCGTGGTGGACCAGATTCGACTTTGGCAGCTGGAGCGGGACCGT
GTCAAAGCTACGTCCGGATTCCTTTTCAAGGACTTTGTCAGTCTGGCAGA
ATACGAGGCGCCATGTCGCTATGCCGAAGAAATCGGTGTTCTGGCATGGA
AGTCGGATCGCAAACGCATGTTCTTCGTGACGAGGCATGAACAAGTGGCT
GCGTTCTTAAGGAGCCGGAAATAAATGGCTGCCGCACCATCTTCTCGTCC
CTTTGAATACCTCGAAAGCCTTGCTGGCACTGTCTTCTACAAACTTTACC
AGCAGCCATCAACGGCTCTCGCCATTTTCAGGCGCATGCTGCCTGATCTG
GCAAAATGCTTTGTCATGGCACTTCTCTACCTAAAGGATCCGCTCCCCGC
GGCGGATCTGGAGGCTTGGGTTAAATCGGAGAGCTTGAAAGAACGCGACA
ATGCACTCTCCATCCTAGGAAGACTGCATATTTTATCCAACACTGTTACG
GCGGATAATGTCCGCGCCTACAAAGTCACCGATCCCTTCGCCACTTCATT
GCGACACGCTCTCACCGGCGCCGACCAAACACAATCTTTTGGCGTCCTTT
CACAAGTGCCTGCTGGCTCGGAAGTCTCGATCCCCGAACTTGATGAGTAT
GCGCGACGACAGTGGGAAGGAGTGCTGGGATACATGGTCGGTACTGGAGG
CATGGGAGGTCCCCAAGTGACCCTCAGCAAAGGCGTGAAGGAGCTCCTGC
AGGCGGGTCATCTGGTCGAGATCCGAGATCGTCGCGTCGAAATCACCCAG
GATGGGTTTGCCTTTGTCCTGCAAGATGTCAGCACGCAGGTGTGGCATAT
CTTGATTCTTTACGTCGAGAGCGCCAGCGCCATCAAGATGGACAGTGTCG
AAGTCCTCTCGTTCGTGTTCCTTCTCAGCAGTCTCGAACTCGGAAAATCA
TATGAAAAGAACCACCTCAGTTCGAAACAACTGCGCATGCTGACCGACCT
TGCCGACTTTGGTATCGTCTATCAAGAATCGCCGGATGCACCGCGTTTCT
ACCCCACCCGTCTTGCAACCACCCTCACGTCCGACTCCAGCGCCTTGAGC
AACCCACTCTTGGGTTCCCTCTCCGGTCCTGCTGGCGAAGCCTCCAGCAA
AGCGGGTACGGGCTTCATCATTATCGAAACCAACTACCGTGTATACGCAT
ACACCTCGTCTCCCCTACAGATCTCCCTGATTGCTCTGTTCACCACACTG
AAATACCGCTTCCCCAACCTCATCACCGGCAAAATCACCCGCCAATCCGT
CCGCCGGGCCGTCGAGATGGGCATCACCGCCGACCAAATCATTTCCTATC
TCTCTACTCACGCCCACCCGCAAATGCGCAAGCACAACGTCTCCCGCTCG
ACCTCAAACCAGGCCGGGATCCCCCCGTCAGTCCTCCCGCCAACCGTGGT
GGACCAGATTCGACTTTGGCAGCTGGAGCGGGACCGTGTCAAAGCTACGT
CCGGATTCCTTTTCAAGGACTTTGTCAGTCTGGCAGAATACGAGGCGCCA
TGTCGCTATGCCGAAGAAATCGGTGTTCTGGCATGGAAGTCGGATCGCAA
ACGCATGTTCTTCGTGACGAGGCATGAACAAGTGGCTGCGTTCTTAAGGA
GCCGGAAATAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000439transcription factor TFIIH core complex
Vocabulary: Molecular Function
TermDefinition
GO:0001671ATPase activator activity
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
M747DRAFT_251468M747DRAFT_251468Aspergillus niger ATCC 13496gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_251468-T1.exon1M747DRAFT_251468-T1.exon1Aspergillus niger ATCC 13496exon
M747DRAFT_251468-T1.exon2M747DRAFT_251468-T1.exon2Aspergillus niger ATCC 13496exon
M747DRAFT_251468-T1.exon3M747DRAFT_251468-T1.exon3Aspergillus niger ATCC 13496exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_251468-T1.cdsM747DRAFT_251468-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_251468-T1.utr3p1M747DRAFT_251468-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_251468-T1M747DRAFT_251468-T1-proteinAspergillus niger ATCC 13496polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09261QR8
DBxrefInterPro:IPR040662
DBxrefInterPro:IPR004598
DBxrefPFAM:PF18307
DBxrefPFAM:PF03849
ProductTFIIH and nucleotide excision repair factor 3 complexes subunit
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851899.1supercontigKZ851899.1:1631115..1632937 +
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