You are here

Home

M747DRAFT_255839-T1, M747DRAFT_255839-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_255839-T1
Unique NameM747DRAFT_255839-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851906.1:468442..469581+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_255839-T1 ID=M747DRAFT_255839-T1|Name=M747DRAFT_255839-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1140bp|location=Sequence derived from alignment at KZ851906.1:468442..469581+ (Aspergillus niger ATCC 13496)
CAGATGGCGATCGCTGAATCTCGTGCGGAGGAACCCCACTTTCATTTTTC
GCATCGCTTCGTCTTTCGCGTCATCGCCGCAGTCCCATCCACCCTCCATC
CTCAATTGCTTCATCGCTGATCGATAGACGAGCGCAGTATCATAATGGTA
TAGTCTCTTTTCCAGCTGTAGCACATGTTCCTTCGAGTCATGGAATATCC
GTCCACTAACATCCCCCCACCAGCCTCACGCAGACTCCTCTTACTTCGGC
GCCGGCAATGGCTCCAAATCCGAAGTCTACACCCAGGTCCTAGAGCAAGC
TCGGGGTCTGGTATACGACCAGCGCAATTGGGTACGATCTTCTTACCTCT
AACTCCTATCTCTCCCATATCCAATTCACCAGCTAACCAACCACTTCTCC
CACCGCCAACAGGTCAGGTAAGAACAACTTCAACTATCGCGCCCCCTCTC
ACCCAAAGAGCACAGCAACCTAACCCTCTCCAAACCAATACAGTAATTTC
TCCAACGTCGCCTCCCTCCTCTGGCACGCCTACGCTGCTCTCCCCGCCCC
CTCCTCCTCCGTCAACTGGGCCGGCTTCTACATCCGCCAGGACAAGTTCC
CCGTCCTCGGCGCACCTTTGGAAGAGGACAGCAAAAAGAAGCCCGTCCTC
CTTCTCGGTCCATTCCAGGGCCGTCCGGCATGTCAGGAGATTCGCTTCGG
GCGGGGCGTGTGCGGAACGGCAGCTGAGAAGCGCGAGACGGTCGTCGTGC
CGGATGTGTTGAACTTCCCGGGCCATATTGCGTGCGATGCGAGCAGCCGG
AGTGAGATTGTGGTGCCGATTTTGAGCAAGGGGGAGGTGAGTACTGGATC
TATGTTATCTGTATCTAATCTAGTGGATGATGGCTGATGGTGTATGTTGG
GCAGACTGTTGCGATTATCGATATTGATTGTGCGGAGCCGGATGGATTTG
ATGATGAGGATAAAAAATATCTGGAGGAGTTGGCTGCGCTGCTGGCGGAG
TGCTGTGATTGGTGATTGGTGATTGGTACTAGTACTACTGAGATTGATGT
GGTGTGTTTATAGATCTGTGGCTGAGGATGGATGGTATGGTGTAATGATA
TATATAGATGGACGAGTAATGATACTTGGAGTGATTGAAG
back to top

Coding sequence (CDS) from alignment at KZ851906.1:468442..469581+

>M747DRAFT_255839-T1 ID=M747DRAFT_255839-T1|Name=M747DRAFT_255839-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=2280bp|location=Sequence derived from alignment at KZ851906.1:468442..469581+ (Aspergillus niger ATCC 13496)
ATGCCTCACGCAGACTCCTCTTACTTCGGCGCCGGCAATGGCTCCAAATC
CGAAGTCTACACCCAGGTCCTAGAGCAAGCTCGGGGTCTGGTATACGACC
AGCGCAATTGGGTCAGTAATTTCTCCAACGTCGCCTCCCTCCTCTGGCAC
GCCTACGCTGCTCTCCCCGCCCCCTCCTCCTCCGTCAACTGGGCCGGCTT
CTACATCCGCCAGGACAAGTTCCCCGTCCTCGGCGCACCTTTGGAAGAGG
ACAGCAAAAAGAAGCCCGTCCTCCTTCTCGGTCCATTCCAGGGCCGTCCG
GCATGTCAGGAGATTCGCTTCGGGCGGGGCGTGTGCGGAACGGCAGCTGA
GAAGCGCGAGACGGTCGTCGTGCCGGATGTGTTGAACTTCCCGGGCCATA
TTGCGTGCGATGCGAGCAGCCGGAGTGAGATTGTGGTGCCGATTTTGAGC
AAGGGGGAGACTGTTGCGATTATCGATATTGATTGTGCGGAGCCGGATGG
ATTTGATGATGAGGATAAAAAATATCTGGAGGAGTTGGCTGCGCTGCTGG
CGGAGTGCTGTGATTGGTGAATGCCTCACGCAGACTCCTCTTACTTCGGC
GCCGGCAATGGCTCCAAATCCGAAGTCTACACCCAGGTCCTAGAGCAAGC
TCGGGGTCTGGTATACGACCAGCGCAATTGGGTCAGTAATTTCTCCAACG
TCGCCTCCCTCCTCTGGCACGCCTACGCTGCTCTCCCCGCCCCCTCCTCC
TCCGTCAACTGGGCCGGCTTCTACATCCGCCAGGACAAGTTCCCCGTCCT
CGGCGCACCTTTGGAAGAGGACAGCAAAAAGAAGCCCGTCCTCCTTCTCG
GTCCATTCCAGGGCCGTCCGGCATGTCAGGAGATTCGCTTCGGGCGGGGC
GTGTGCGGAACGGCAGCTGAGAAGCGCGAGACGGTCGTCGTGCCGGATGT
GTTGAACTTCCCGGGCCATATTGCGTGCGATGCGAGCAGCCGGAGTGAGA
TTGTGGTGCCGATTTTGAGCAAGGGGGAGACTGTTGCGATTATCGATATT
GATTGTGCGGAGCCGGATGGATTTGATGATGAGGATAAAAAATATCTGGA
GGAGTTGGCTGCGCTGCTGGCGGAGTGCTGTGATTGGTGAATGCCTCACG
CAGACTCCTCTTACTTCGGCGCCGGCAATGGCTCCAAATCCGAAGTCTAC
ACCCAGGTCCTAGAGCAAGCTCGGGGTCTGGTATACGACCAGCGCAATTG
GGTCAGTAATTTCTCCAACGTCGCCTCCCTCCTCTGGCACGCCTACGCTG
CTCTCCCCGCCCCCTCCTCCTCCGTCAACTGGGCCGGCTTCTACATCCGC
CAGGACAAGTTCCCCGTCCTCGGCGCACCTTTGGAAGAGGACAGCAAAAA
GAAGCCCGTCCTCCTTCTCGGTCCATTCCAGGGCCGTCCGGCATGTCAGG
AGATTCGCTTCGGGCGGGGCGTGTGCGGAACGGCAGCTGAGAAGCGCGAG
ACGGTCGTCGTGCCGGATGTGTTGAACTTCCCGGGCCATATTGCGTGCGA
TGCGAGCAGCCGGAGTGAGATTGTGGTGCCGATTTTGAGCAAGGGGGAGA
CTGTTGCGATTATCGATATTGATTGTGCGGAGCCGGATGGATTTGATGAT
GAGGATAAAAAATATCTGGAGGAGTTGGCTGCGCTGCTGGCGGAGTGCTG
TGATTGGTGAATGCCTCACGCAGACTCCTCTTACTTCGGCGCCGGCAATG
GCTCCAAATCCGAAGTCTACACCCAGGTCCTAGAGCAAGCTCGGGGTCTG
GTATACGACCAGCGCAATTGGGTCAGTAATTTCTCCAACGTCGCCTCCCT
CCTCTGGCACGCCTACGCTGCTCTCCCCGCCCCCTCCTCCTCCGTCAACT
GGGCCGGCTTCTACATCCGCCAGGACAAGTTCCCCGTCCTCGGCGCACCT
TTGGAAGAGGACAGCAAAAAGAAGCCCGTCCTCCTTCTCGGTCCATTCCA
GGGCCGTCCGGCATGTCAGGAGATTCGCTTCGGGCGGGGCGTGTGCGGAA
CGGCAGCTGAGAAGCGCGAGACGGTCGTCGTGCCGGATGTGTTGAACTTC
CCGGGCCATATTGCGTGCGATGCGAGCAGCCGGAGTGAGATTGTGGTGCC
GATTTTGAGCAAGGGGGAGACTGTTGCGATTATCGATATTGATTGTGCGG
AGCCGGATGGATTTGATGATGAGGATAAAAAATATCTGGAGGAGTTGGCT
GCGCTGCTGGCGGAGTGCTGTGATTGGTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
M747DRAFT_255839M747DRAFT_255839Aspergillus niger ATCC 13496gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_255839-T1M747DRAFT_255839-T1-proteinAspergillus niger ATCC 13496polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_255839-T1.utr5p1M747DRAFT_255839-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_255839-T1.exon1M747DRAFT_255839-T1.exon1Aspergillus niger ATCC 13496exon
M747DRAFT_255839-T1.exon2M747DRAFT_255839-T1.exon2Aspergillus niger ATCC 13496exon
M747DRAFT_255839-T1.exon3M747DRAFT_255839-T1.exon3Aspergillus niger ATCC 13496exon
M747DRAFT_255839-T1.exon4M747DRAFT_255839-T1.exon4Aspergillus niger ATCC 13496exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_255839-T1.cdsM747DRAFT_255839-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_255839-T1.utr3p1M747DRAFT_255839-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


Properties
Property NameValue
NoteantiSMASH:Cluster_8519061.3
DBxrefInterPro:IPR000614
DBxrefInterPro:IPR003018
DBxrefInterPro:IPR029016
DBxrefPFAM:PF13185
DBxrefPFAM:PF01590
ProductGAF domain nucleotide-binding protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851906.1supercontigKZ851906.1:468442..469581 +
Powered by Drupal