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M747DRAFT_256960-T1, M747DRAFT_256960-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_256960-T1
Unique NameM747DRAFT_256960-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851908.1:680791..681928+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_256960-T1 ID=M747DRAFT_256960-T1|Name=M747DRAFT_256960-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1138bp|location=Sequence derived from alignment at KZ851908.1:680791..681928+ (Aspergillus niger ATCC 13496)
ATGCACTCGTTTGCTTCTCTTCTCGCCTACGGCCTGGTCGCCGGCGCCAC
CTTCGCTTCTGCCTCTCCTATCGAAGCTCGAGACAGCTGCACGTTCACCA
CCGCTGCCGCTGCTAAAGCGGGCAAGGCGAAATGCTCTACTATCACCCTT
AACAACATCGAAGTTCCAGCTGGAACCACCCTCGACCTGACCGGTCTCAC
CAGCGGTACCAAGGTCATCTTCGAGGGCACCACGACCTTCCAGTACGAAG
AATGGGCAGGCCCCTTGATCTCCATGAGTGGCGAACATATCACCGTCACT
GGTGCCTCCGGCCACCTCATCAATTGCGATGGTGCGCGCTGGTGGGATGG
CAAGGGAACCAGCGGAAAGAAGAAGCCCAAGTTCTTTTACGCCCATGGCC
TTGACTCCTCGTCTATTACTGGATTAAACATCAAAAACACCCCCCTTATG
GCGTTTAGTGTCCAGGCGAATGACATTACGTTTACCGATGTTACCATCAA
TAATGCGGATGGCGACACCCAGGGTGGACACAACACTGATGCGTTCGATG
TTGGCAACTCGGTCGGGGTGAATATCATTAAGCCTTGGGTCCATAACCAG
GATGACTGTCTTGCGGTTAACTCTGGCGAGGTAAGCAGCTCTGCATATAT
GCTTGATTCGTAATTATATTGATATTCTATAGAACATCTGGTTCACCGGC
GGCACCTGCATTGGCGGCCACGGTCTCTCCATCGGCTCTGTCGGCGACCG
CTCCAACAACGTCGTCAAGAACGTCACCATCGAACACTCCACCGTGAGCA
ATTCCGAAAACGCCGTCCGAATTAAGACCATCTCTGGCGCCACTGGCTCC
GTGTCCGAGATTACGTACTCCAACATCGTCATGTCTGGCATCTCCGATTA
CGGCGTGGTCATTCAGCAGGATTACGAAGACGGCAAGCCTACGGGTAAGC
CGACGAACGGTGTCACTATTCAGGATGTTAAGCTGGAGAGCGTGACTGGT
AGCGTGGATAGTGGGGCTACTGAGATCTATCTTCTTTGCGGGTCTGGTAG
CTGCTCGGACTGGACCTGGGACGATGTGAAAGTTACCGGGGGGAAGAAGT
CCACCGCTTGCAAGAACTTCCCTTCGGTGGCCTCTTGT
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Coding sequence (CDS) from alignment at KZ851908.1:680791..681928+

>M747DRAFT_256960-T1 ID=M747DRAFT_256960-T1|Name=M747DRAFT_256960-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=2172bp|location=Sequence derived from alignment at KZ851908.1:680791..681928+ (Aspergillus niger ATCC 13496)
ATGCACTCGTTTGCTTCTCTTCTCGCCTACGGCCTGGTCGCCGGCGCCAC
CTTCGCTTCTGCCTCTCCTATCGAAGCTCGAGACAGCTGCACGTTCACCA
CCGCTGCCGCTGCTAAAGCGGGCAAGGCGAAATGCTCTACTATCACCCTT
AACAACATCGAAGTTCCAGCTGGAACCACCCTCGACCTGACCGGTCTCAC
CAGCGGTACCAAGGTCATCTTCGAGGGCACCACGACCTTCCAGTACGAAG
AATGGGCAGGCCCCTTGATCTCCATGAGTGGCGAACATATCACCGTCACT
GGTGCCTCCGGCCACCTCATCAATTGCGATGGTGCGCGCTGGTGGGATGG
CAAGGGAACCAGCGGAAAGAAGAAGCCCAAGTTCTTTTACGCCCATGGCC
TTGACTCCTCGTCTATTACTGGATTAAACATCAAAAACACCCCCCTTATG
GCGTTTAGTGTCCAGGCGAATGACATTACGTTTACCGATGTTACCATCAA
TAATGCGGATGGCGACACCCAGGGTGGACACAACACTGATGCGTTCGATG
TTGGCAACTCGGTCGGGGTGAATATCATTAAGCCTTGGGTCCATAACCAG
GATGACTGTCTTGCGGTTAACTCTGGCGAGAACATCTGGTTCACCGGCGG
CACCTGCATTGGCGGCCACGGTCTCTCCATCGGCTCTGTCGGCGACCGCT
CCAACAACGTCGTCAAGAACGTCACCATCGAACACTCCACCGTGAGCAAT
TCCGAAAACGCCGTCCGAATTAAGACCATCTCTGGCGCCACTGGCTCCGT
GTCCGAGATTACGTACTCCAACATCGTCATGTCTGGCATCTCCGATTACG
GCGTGGTCATTCAGCAGGATTACGAAGACGGCAAGCCTACGGGTAAGCCG
ACGAACGGTGTCACTATTCAGGATGTTAAGCTGGAGAGCGTGACTGGTAG
CGTGGATAGTGGGGCTACTGAGATCTATCTTCTTTGCGGGTCTGGTAGCT
GCTCGGACTGGACCTGGGACGATGTGAAAGTTACCGGGGGGAAGAAGTCC
ACCGCTTGCAAGAACTTCCCTTCGGTGGCCTCTTGTATGCACTCGTTTGC
TTCTCTTCTCGCCTACGGCCTGGTCGCCGGCGCCACCTTCGCTTCTGCCT
CTCCTATCGAAGCTCGAGACAGCTGCACGTTCACCACCGCTGCCGCTGCT
AAAGCGGGCAAGGCGAAATGCTCTACTATCACCCTTAACAACATCGAAGT
TCCAGCTGGAACCACCCTCGACCTGACCGGTCTCACCAGCGGTACCAAGG
TCATCTTCGAGGGCACCACGACCTTCCAGTACGAAGAATGGGCAGGCCCC
TTGATCTCCATGAGTGGCGAACATATCACCGTCACTGGTGCCTCCGGCCA
CCTCATCAATTGCGATGGTGCGCGCTGGTGGGATGGCAAGGGAACCAGCG
GAAAGAAGAAGCCCAAGTTCTTTTACGCCCATGGCCTTGACTCCTCGTCT
ATTACTGGATTAAACATCAAAAACACCCCCCTTATGGCGTTTAGTGTCCA
GGCGAATGACATTACGTTTACCGATGTTACCATCAATAATGCGGATGGCG
ACACCCAGGGTGGACACAACACTGATGCGTTCGATGTTGGCAACTCGGTC
GGGGTGAATATCATTAAGCCTTGGGTCCATAACCAGGATGACTGTCTTGC
GGTTAACTCTGGCGAGAACATCTGGTTCACCGGCGGCACCTGCATTGGCG
GCCACGGTCTCTCCATCGGCTCTGTCGGCGACCGCTCCAACAACGTCGTC
AAGAACGTCACCATCGAACACTCCACCGTGAGCAATTCCGAAAACGCCGT
CCGAATTAAGACCATCTCTGGCGCCACTGGCTCCGTGTCCGAGATTACGT
ACTCCAACATCGTCATGTCTGGCATCTCCGATTACGGCGTGGTCATTCAG
CAGGATTACGAAGACGGCAAGCCTACGGGTAAGCCGACGAACGGTGTCAC
TATTCAGGATGTTAAGCTGGAGAGCGTGACTGGTAGCGTGGATAGTGGGG
CTACTGAGATCTATCTTCTTTGCGGGTCTGGTAGCTGCTCGGACTGGACC
TGGGACGATGTGAAAGTTACCGGGGGGAAGAAGTCCACCGCTTGCAAGAA
CTTCCCTTCGGTGGCCTCTTGT
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
M747DRAFT_256960M747DRAFT_256960Aspergillus niger ATCC 13496gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_256960-T1.exon1M747DRAFT_256960-T1.exon1Aspergillus niger ATCC 13496exon
M747DRAFT_256960-T1.exon2M747DRAFT_256960-T1.exon2Aspergillus niger ATCC 13496exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_256960-T1.cdsM747DRAFT_256960-T1.cdsAspergillus niger ATCC 13496CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_256960-T1M747DRAFT_256960-T1-proteinAspergillus niger ATCC 13496polypeptide


Properties
Property NameValue
NoteSECRETED:SignalP(1-21)
NoteCAZy:GH28
DBxrefInterPro:IPR011050
DBxrefInterPro:IPR000743
DBxrefInterPro:IPR012334
DBxrefInterPro:IPR006626
DBxrefPFAM:PF00295
ProductEndopolygalacturonase-2 precursor
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851908.1supercontigKZ851908.1:680791..681928 +
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