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M747DRAFT_258879-T1, M747DRAFT_258879-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_258879-T1
Unique NameM747DRAFT_258879-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851912.1:651275..652786-

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_258879-T1 ID=M747DRAFT_258879-T1|Name=M747DRAFT_258879-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1512bp|location=Sequence derived from alignment at KZ851912.1:651275..652786- (Aspergillus niger ATCC 13496)
CTTCATATCCCTGCCCACCACCGCTAATCCTTTCCTCGTGGCACATATCT
GAAAGGATGAACACCCAAGTCACATGATGGATCTACCACGTGACATATCT
CATAATCACCAATCGGGAACCCTTGCACGGCCCACCTTTCACGGCCAAGG
ATGGGTGTAAATCGAAGCGATATGACAACATCCAGGGTCCCGTTCGCTTA
TAATCTGCGAAGGCACTTGATGCAGTAACTTTCTATTTCCTCCGAACCAA
TATCGGACGACACTTGGGGAGAGAAAGCAGCAATGGACCCAGTAGCACGT
TCAGAATCTGCTACGCCCCGAGCGTCTGGTGCCTCGACGCCGCAGCCACC
GTCTAAAGTCCAGCAGCCTAAGCCACAAGCACTCCCCAGCAGGTCTGGTC
CATCTGCCATCCTCGTGTCAACGCGACAAAAAGGCAATCCGATATTGAAT
CACATCAAACTGCTGCCATGGGAATATGCAGATATTCCGGCCGACTATGT
GGTCGGAAATACCACCTGTGCTCTATTTCTTTCCTTGAAGTACCACCGGT
TACATCCCGAATATATCTACTCGCGAATTCGTCTCATAGCAGGAAAATAC
CTTTTACGTATTATCCTGGTTATTGTGGATATCCCGAATCATGAAGAAAG
CTTGAAGGAGCTTTCGAAGACATCCATCGTCAATAACTTGACGCTGATCC
TTTGCTGGTCTGCACCCGAAGCTGCACACTATCTTGAATTGTTCAAGTCT
TCTGAAAACTCTCAACCTATTGCTATTCGCACGCAGCAAGCTCAGTCATA
CAAGGAATCTCTTGTTGAGTTCGTCACGACACCCCGAAGCATTAATAAAT
CAGATGCAGCAAGCTTGATATCTACGTTTGGGAGCCTGCAGAATGCGGTT
AATGCCCAACCAGAGCAGATCAGTGCAGTACCCGGATGGGGTGAGAAGAA
GGTCAGGCAGTGGTGTACTACAGTAAGAGAAGGCTTTAGGGCCGAGTCGG
CGAAGAGGGTAACTGCCAGGGGAGGAATCGCTAGAGGTCATGCAACCGGG
GTTGTTGAGGATCATGGAGACCGAACCTTCAATTCTTTGGAAACAAGTGA
AGACAACGCCGCAGAATCAATCCTAGCAGATGCAGAGGAGGGTCGGCTAG
AAACACGGAGACAAGCTATCGAAGAGCGACGATTGCAGGAGTCGAGTCAG
CAGGAGGAAGAGATGAGTGAGGGCATCATGGCGGCTCTGGCGAAGTATCG
ACAGGACGGCGGTTGATCCCTTAACTAGGTGGATTCTGTTTATAACATGG
AGACCGTGGTGTAGAGGGACATTGCCTTGCGGATGCCAACAACTAGCCCC
AGCCTGTAGTCAAGATATTAAGCAAGAGACTGGAGCCAATAGTGCAACTC
CTCATTGACGGTATGGGGGTTTATTACTCCCTTGTATGCCTTGAAATTAC
TGAGCGGGATTCGAGATGCTGCCCGGAGAGTCTACAGTGGGATGGGACAA
GCTGCACGTGAC
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Coding sequence (CDS) from alignment at KZ851912.1:651275..652786-

>M747DRAFT_258879-T1 ID=M747DRAFT_258879-T1|Name=M747DRAFT_258879-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=984bp|location=Sequence derived from alignment at KZ851912.1:651275..652786- (Aspergillus niger ATCC 13496)
ATGGACCCAGTAGCACGTTCAGAATCTGCTACGCCCCGAGCGTCTGGTGC
CTCGACGCCGCAGCCACCGTCTAAAGTCCAGCAGCCTAAGCCACAAGCAC
TCCCCAGCAGGTCTGGTCCATCTGCCATCCTCGTGTCAACGCGACAAAAA
GGCAATCCGATATTGAATCACATCAAACTGCTGCCATGGGAATATGCAGA
TATTCCGGCCGACTATGTGGTCGGAAATACCACCTGTGCTCTATTTCTTT
CCTTGAAGTACCACCGGTTACATCCCGAATATATCTACTCGCGAATTCGT
CTCATAGCAGGAAAATACCTTTTACGTATTATCCTGGTTATTGTGGATAT
CCCGAATCATGAAGAAAGCTTGAAGGAGCTTTCGAAGACATCCATCGTCA
ATAACTTGACGCTGATCCTTTGCTGGTCTGCACCCGAAGCTGCACACTAT
CTTGAATTGTTCAAGTCTTCTGAAAACTCTCAACCTATTGCTATTCGCAC
GCAGCAAGCTCAGTCATACAAGGAATCTCTTGTTGAGTTCGTCACGACAC
CCCGAAGCATTAATAAATCAGATGCAGCAAGCTTGATATCTACGTTTGGG
AGCCTGCAGAATGCGGTTAATGCCCAACCAGAGCAGATCAGTGCAGTACC
CGGATGGGGTGAGAAGAAGGTCAGGCAGTGGTGTACTACAGTAAGAGAAG
GCTTTAGGGCCGAGTCGGCGAAGAGGGTAACTGCCAGGGGAGGAATCGCT
AGAGGTCATGCAACCGGGGTTGTTGAGGATCATGGAGACCGAACCTTCAA
TTCTTTGGAAACAAGTGAAGACAACGCCGCAGAATCAATCCTAGCAGATG
CAGAGGAGGGTCGGCTAGAAACACGGAGACAAGCTATCGAAGAGCGACGA
TTGCAGGAGTCGAGTCAGCAGGAGGAAGAGATGAGTGAGGGCATCATGGC
GGCTCTGGCGAAGTATCGACAGGACGGCGGTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003684damaged DNA binding
GO:0004519endonuclease activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
M747DRAFT_258879M747DRAFT_258879Aspergillus niger ATCC 13496gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_258879-T1.cdsM747DRAFT_258879-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_258879-T1.utr3p1M747DRAFT_258879-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_258879-T1.exon1M747DRAFT_258879-T1.exon1Aspergillus niger ATCC 13496exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_258879-T1.utr5p1M747DRAFT_258879-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_258879-T1M747DRAFT_258879-T1-proteinAspergillus niger ATCC 13496polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09264DOU
DBxrefInterPro:IPR011335
DBxrefInterPro:IPR010994
DBxrefInterPro:IPR004579
DBxrefPFAM:PF03834
Productmating-type switch/DNA repair protein Swi10/Rad10
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851912.1supercontigKZ851912.1:651275..652786 -
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