You are here

Home

M747DRAFT_260896-T1, M747DRAFT_260896-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_260896-T1
Unique NameM747DRAFT_260896-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851917.1:270317..271495+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_260896-T1 ID=M747DRAFT_260896-T1|Name=M747DRAFT_260896-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1179bp|location=Sequence derived from alignment at KZ851917.1:270317..271495+ (Aspergillus niger ATCC 13496)
TCTCAATACATACTTTCGAATCTGGAGTCAACATCCACCAGTGTGCAGAA
CGCGCGTTTCGTATATTCCCTTCCTTGTCGCCCATCATGTCAGATCGCGA
ATTTAGTGGTAAGTTCTTTGCCAGATTACTTCCTGGCGCGATATTATGAT
GTCAAGCTAACTTGCGATTTTCCTAGCGAACGACGACTTGTCGCTACCTA
AAGGTATGTCGCCTTCCGCCGTGTTGTCGCGTCGCATCGACTCCCCCACT
TTTGAGGGCAGTGGGACTCGTCGCCCTTTGCTTTGCCTCCCTCGGACTCA
GTATAAAATATAATCAAATATCCATCATATACTAAATCGCAAACCATACT
CACAGCGACGGTCCAAAAGATCATCACCGAGATCCTACCTCCTTCATCCG
GCCAGACATTCTCCAAAGATGCTCGCGATCTCCTCATGGAATGCTGCGTT
GAATTCATCACTTTGATCTCTTCCGAAGCAAACGATATCAGTGAAAAGGA
AGCCAAGAAGACCATCGCCTGCGAACATGTCGAGCGCGCCCTCCGTGATC
TCGGTTTCAGCGACTACATCCCCGATGTCCTTGCTGTCGCGGAGGAACAC
AAAGAGCAGTTGAAGGTATGTGGCTGTTACCATTACCTCTTTTGTGGCAT
TGTCCGGCTAACATGGATCGGTTACACTAGTCGCGAGAGAAGAAGCAGAG
CAAGATGGAGCAGAGCGGGTTGTCCGAGGAGGAGCTTCTACGGCAGCAAC
AGGAGTTGTTCCGCTCAGCTACTGAGAAGTATCACGCTGCTCCGGAGTGA
AGGTTACGAGTTTAATATCCGGGAAGGCTAAAAAAGTAATGCGGTTAGTC
TCATGCTGGTCATAGAGGGTCTGGTTCCGGAGTTCTTGAGACGTTTCCTA
CGACGGGGATTTGGAGTTCGGGTGGTTCTGGTATTATACGCTTTATACGC
TTTGTGGGAAGGATTTTTATCACTATACTTTTTCTTCTATATTCTCCTGG
CTGAGGCAGTCTTTCTGGTTCGTTATATTATTTATTGATGTGCATGGCGG
TATAACGCAATCCTCTGATCAGAGGATATGGTTCATGTTCTAGTAGTGCT
TATACCCATGGTAGTGACTATGGTTGACGTCCGGGAAATACCAACAGCGA
CAACGAAACATGGTATCTAGATATCTTGG
back to top

Coding sequence (CDS) from alignment at KZ851917.1:270317..271495+

>M747DRAFT_260896-T1 ID=M747DRAFT_260896-T1|Name=M747DRAFT_260896-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=1716bp|location=Sequence derived from alignment at KZ851917.1:270317..271495+ (Aspergillus niger ATCC 13496)
ATGTCAGATCGCGAATTTAGTGCGAACGACGACTTGTCGCTACCTAAAGC
GACGGTCCAAAAGATCATCACCGAGATCCTACCTCCTTCATCCGGCCAGA
CATTCTCCAAAGATGCTCGCGATCTCCTCATGGAATGCTGCGTTGAATTC
ATCACTTTGATCTCTTCCGAAGCAAACGATATCAGTGAAAAGGAAGCCAA
GAAGACCATCGCCTGCGAACATGTCGAGCGCGCCCTCCGTGATCTCGGTT
TCAGCGACTACATCCCCGATGTCCTTGCTGTCGCGGAGGAACACAAAGAG
CAGTTGAAGTCGCGAGAGAAGAAGCAGAGCAAGATGGAGCAGAGCGGGTT
GTCCGAGGAGGAGCTTCTACGGCAGCAACAGGAGTTGTTCCGCTCAGCTA
CTGAGAAGTATCACGCTGCTCCGGAGTGAATGTCAGATCGCGAATTTAGT
GCGAACGACGACTTGTCGCTACCTAAAGCGACGGTCCAAAAGATCATCAC
CGAGATCCTACCTCCTTCATCCGGCCAGACATTCTCCAAAGATGCTCGCG
ATCTCCTCATGGAATGCTGCGTTGAATTCATCACTTTGATCTCTTCCGAA
GCAAACGATATCAGTGAAAAGGAAGCCAAGAAGACCATCGCCTGCGAACA
TGTCGAGCGCGCCCTCCGTGATCTCGGTTTCAGCGACTACATCCCCGATG
TCCTTGCTGTCGCGGAGGAACACAAAGAGCAGTTGAAGTCGCGAGAGAAG
AAGCAGAGCAAGATGGAGCAGAGCGGGTTGTCCGAGGAGGAGCTTCTACG
GCAGCAACAGGAGTTGTTCCGCTCAGCTACTGAGAAGTATCACGCTGCTC
CGGAGTGAATGTCAGATCGCGAATTTAGTGCGAACGACGACTTGTCGCTA
CCTAAAGCGACGGTCCAAAAGATCATCACCGAGATCCTACCTCCTTCATC
CGGCCAGACATTCTCCAAAGATGCTCGCGATCTCCTCATGGAATGCTGCG
TTGAATTCATCACTTTGATCTCTTCCGAAGCAAACGATATCAGTGAAAAG
GAAGCCAAGAAGACCATCGCCTGCGAACATGTCGAGCGCGCCCTCCGTGA
TCTCGGTTTCAGCGACTACATCCCCGATGTCCTTGCTGTCGCGGAGGAAC
ACAAAGAGCAGTTGAAGTCGCGAGAGAAGAAGCAGAGCAAGATGGAGCAG
AGCGGGTTGTCCGAGGAGGAGCTTCTACGGCAGCAACAGGAGTTGTTCCG
CTCAGCTACTGAGAAGTATCACGCTGCTCCGGAGTGAATGTCAGATCGCG
AATTTAGTGCGAACGACGACTTGTCGCTACCTAAAGCGACGGTCCAAAAG
ATCATCACCGAGATCCTACCTCCTTCATCCGGCCAGACATTCTCCAAAGA
TGCTCGCGATCTCCTCATGGAATGCTGCGTTGAATTCATCACTTTGATCT
CTTCCGAAGCAAACGATATCAGTGAAAAGGAAGCCAAGAAGACCATCGCC
TGCGAACATGTCGAGCGCGCCCTCCGTGATCTCGGTTTCAGCGACTACAT
CCCCGATGTCCTTGCTGTCGCGGAGGAACACAAAGAGCAGTTGAAGTCGC
GAGAGAAGAAGCAGAGCAAGATGGAGCAGAGCGGGTTGTCCGAGGAGGAG
CTTCTACGGCAGCAACAGGAGTTGTTCCGCTCAGCTACTGAGAAGTATCA
CGCTGCTCCGGAGTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NCB2M747DRAFT_260896Aspergillus niger ATCC 13496gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_260896-T1M747DRAFT_260896-T1-proteinAspergillus niger ATCC 13496polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_260896-T1.utr5p1M747DRAFT_260896-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_260896-T1.exon1M747DRAFT_260896-T1.exon1Aspergillus niger ATCC 13496exon
M747DRAFT_260896-T1.exon2M747DRAFT_260896-T1.exon2Aspergillus niger ATCC 13496exon
M747DRAFT_260896-T1.exon3M747DRAFT_260896-T1.exon3Aspergillus niger ATCC 13496exon
M747DRAFT_260896-T1.exon4M747DRAFT_260896-T1.exon4Aspergillus niger ATCC 13496exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_260896-T1.cdsM747DRAFT_260896-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_260896-T1.utr3p1M747DRAFT_260896-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


Properties
Property NameValue
NoteantiSMASH:Cluster_8519171.1
DBxrefInterPro:IPR009072
DBxrefInterPro:IPR003958
DBxrefPFAM:PF00125
DBxrefPFAM:PF00808
Productnegative cofactor 2 transcription regulator complex subunit ncb2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851917.1supercontigKZ851917.1:270317..271495 +
Powered by Drupal