|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at KZ851926.1:118411..120542- Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >M747DRAFT_263549-T1 ID=M747DRAFT_263549-T1|Name=M747DRAFT_263549-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=2132bp|location=Sequence derived from alignment at KZ851926.1:118411..120542- (Aspergillus niger ATCC 13496)
ATGCCGCTCCACATTTTCCTGCGACGCTCTTTGGCCCCCCATCTGTCAGT
TTCTGGCGCGCGCACTTCTCTGCGTACCCCCCAAGCGCGGTTCTATTCTC
CCGAGTACCTACGCTCGCTAAAGGCCCGTCGCATCCCATGGACAATAACG
AAGGAAGACCTCCGCAAGCCGGAGGCGGAGCTGATCGAGGTCGTAAGAAG
CGGAATATGGGACGATCCGAGTGGAGGTATGTTGTGCATGCCCCCGATCC
GGGATGTTTGGGTTGAGCAATTGATTGTCTGACTTCCAGCTAACCCAGAA
AGTCGGAATATGGTAGATAAGAGAGCCCGGCACGATGCTCAGCAGGAAGC
GAAACGTCGCAAGATCGAGAACGGAGAGGAGGTTAGGGCTCCTGTATATG
CGACGCAATTCTCCAAGGAGGACATCGAGAGTGAGCAGCGCCGCCCCAAG
AAGAAGGTCGCCGTGCTGCTGGGATATTCGGGAACTGGATACAAGGGCAT
GCAATTGTATGATTACGGTCCTTTGCGGTTTATTTTAAAAAATATCGGAG
CTGTTACTAATTGTAGGTAGGAGCGAGACGGAAAAGACCATCGAAGGAGA
GCTCTTTGCGGCTTTCGTGGCGGCTGGCGCCATCTCCAAGGCCAACGCAA
CCGACCCGAAGAAGTCATCGCTGGTGCGGTGCGCGCGTACCGACAAGGGT
GTCCACGCTGCGGGAAACATTGTCTCCCTGAAGCTGATTGTCGAAGATGA
CGATATCATTCAGAAGATCAACGAGAAACTCAGCTCGCAGATTCGCGTAT
GGGACATCCTCGTCACGAACAAGTCGTTCAGCAGTTATCAGCTGTGCGAC
TCTCGCATTTACGAATACCTCATTCCAACTCACTGTTTCCTGCCGCCTCA
CCCCAGCACTTACCTGGGCAAGAAGCTCTTCGAGTACGCCGAGAAGGAGG
GTGACCTGGAGGGTTACAAGGCGCGACAGGAAGAGGTGGCGAGCTACTGG
GAGGAGACCGACGAGAAGTACGTCCGTCCGATCCTCGACAACACGCCCGA
GGATATCCGCAAGCTCGTCGAGAAGGTCCTCCACCTGAACGATGAGGACC
AGTCCGCGCAAGACGACATGTTCCAGACACAAGACAAGCCTGCATCAGAG
GAAACCACCGAACAGCCATCCTCCGAAGGAAAGCCCGCAGATGCTGAAAA
AGACGAGGCCGAAGAAGCGCGCCGACGTAAGATCTTCGAGACCGTCAAAG
CCATCAAAGCCGCCTATCTCCAGGCTAAGAGGGCCTACCGTATTCCGGCC
CAACGCCTGGCCCGCGTGCAGGAAGCCCTCGACAAGTACGTCGGAACGAA
TAACTTCTTCAACTACACAATCCAAAAGACACATGCCGACCCATCCTCAA
AACGTCACATCAAGTCCTTCAAGATGGCCGAACAACCCATCATCATCAAC
GGCACCGAGTGGCTCAGCCTCAAGGTCCATGGCCAAAGTTTCATGATGCA
CCAGATCCGCAAGATGGTCGCCATGGCTGCCATGGTCGTGCGCTGCGGCT
GTGATCCCCAGCGGATTGTCGAGACTTACGGCGCCAATAAGATCGCCATT
CCCAAGGCTCCCGGTCTGGGTCTGCTTCTTGAACGGCCCGTCTTCGACTC
GTATAACCGGAAGACCCATGAGACGGGCAAAGACCCCATCGACTTCGACA
AGCATGCCGATACCATTAATGAGTTCAAGCAGCGTGAGATTTACGATCGT
ATCTTCCGTGAGGAAGAAGAAACTCATGCGTATGTTTATCACTCCCCTGT
TTTCGTTCGTCCTTGGAGTTATTGATTCAGAACTAATGATAATATCTTTC
GTTTAGTTTCTCTGCTTTCTTTGGCCACCTCGATCACTACTCGCAAGAGG
AATTCCTCTACGTCACGTCGGGCGGTATCCCTGCTGCCAGACTAGTCTCG
GTGCCTGCTAACGGCACGGAGGAGAAGAAGTCGCAGCGCGAGGCGTTGGC
AGAGGTGGAGGGTGCTGCGTCGGAGGATGAGGGTGCTCCTCCGAATGGGG
GAGAAGAGGGAGGTTAGATAGATAACTGACGTGCTCTCGACAATGAAAGA
CTGATGTTAGTTATCTATAATACATGCAAGCC back to topCoding sequence (CDS) from alignment at KZ851926.1:118411..120542- >M747DRAFT_263549-T1 ID=M747DRAFT_263549-T1|Name=M747DRAFT_263549-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=7416bp|location=Sequence derived from alignment at KZ851926.1:118411..120542- (Aspergillus niger ATCC 13496)
TTTCTCTGCTTTCTTTGGCCACCTCGATCACTACTCGCAAGAGGAATTCC
TCTACGTCACGTCGGGCGGTATCCCTGCTGCCAGACTAGTCTCGGTGCCT
GCTAACGGCACGGAGGAGAAGAAGTCGCAGCGCGAGGCGTTGGCAGAGGT
GGAGGGTGCTGCGTCGGAGGATGAGGGTGCTCCTCCGAATGGGGGAGAAG
AGGGAGGTTAGGAGCGAGACGGAAAAGACCATCGAAGGAGAGCTCTTTGC
GGCTTTCGTGGCGGCTGGCGCCATCTCCAAGGCCAACGCAACCGACCCGA
AGAAGTCATCGCTGGTGCGGTGCGCGCGTACCGACAAGGGTGTCCACGCT
GCGGGAAACATTGTCTCCCTGAAGCTGATTGTCGAAGATGACGATATCAT
TCAGAAGATCAACGAGAAACTCAGCTCGCAGATTCGCGTATGGGACATCC
TCGTCACGAACAAGTCGTTCAGCAGTTATCAGCTGTGCGACTCTCGCATT
TACGAATACCTCATTCCAACTCACTGTTTCCTGCCGCCTCACCCCAGCAC
TTACCTGGGCAAGAAGCTCTTCGAGTACGCCGAGAAGGAGGGTGACCTGG
AGGGTTACAAGGCGCGACAGGAAGAGGTGGCGAGCTACTGGGAGGAGACC
GACGAGAAGTACGTCCGTCCGATCCTCGACAACACGCCCGAGGATATCCG
CAAGCTCGTCGAGAAGGTCCTCCACCTGAACGATGAGGACCAGTCCGCGC
AAGACGACATGTTCCAGACACAAGACAAGCCTGCATCAGAGGAAACCACC
GAACAGCCATCCTCCGAAGGAAAGCCCGCAGATGCTGAAAAAGACGAGGC
CGAAGAAGCGCGCCGACGTAAGATCTTCGAGACCGTCAAAGCCATCAAAG
CCGCCTATCTCCAGGCTAAGAGGGCCTACCGTATTCCGGCCCAACGCCTG
GCCCGCGTGCAGGAAGCCCTCGACAAGTACGTCGGAACGAATAACTTCTT
CAACTACACAATCCAAAAGACACATGCCGACCCATCCTCAAAACGTCACA
TCAAGTCCTTCAAGATGGCCGAACAACCCATCATCATCAACGGCACCGAG
TGGCTCAGCCTCAAGGTCCATGGCCAAAGTTTCATGATGCACCAGATCCG
CAAGATGGTCGCCATGGCTGCCATGGTCGTGCGCTGCGGCTGTGATCCCC
AGCGGATTGTCGAGACTTACGGCGCCAATAAGATCGCCATTCCCAAGGCT
CCCGGTCTGGGTCTGCTTCTTGAACGGCCCGTCTTCGACTCGTATAACCG
GAAGACCCATGAGACGGGCAAAGACCCCATCGACTTCGACAAGCATGCCG
ATACCATTAATGAGTTCAAGCAGCGTGAGATTTACGATCGTATCTTCCGT
GAGGAAGAAGAAACTCATGCAAAGTCGGAATATGGTAGATAAGAGAGCCC
GGCACGATGCTCAGCAGGAAGCGAAACGTCGCAAGATCGAGAACGGAGAG
GAGGTTAGGGCTCCTGTATATGCGACGCAATTCTCCAAGGAGGACATCGA
GAGTGAGCAGCGCCGCCCCAAGAAGAAGGTCGCCGTGCTGCTGGGATATT
CGGGAACTGGATACAAGGGCATGCAATTATGCCGCTCCACATTTTCCTGC
GACGCTCTTTGGCCCCCCATCTGTCAGTTTCTGGCGCGCGCACTTCTCTG
CGTACCCCCCAAGCGCGGTTCTATTCTCCCGAGTACCTACGCTCGCTAAA
GGCCCGTCGCATCCCATGGACAATAACGAAGGAAGACCTCCGCAAGCCGG
AGGCGGAGCTGATCGAGGTCGTAAGAAGCGGAATATGGGACGATCCGAGT
GGAGTTTCTCTGCTTTCTTTGGCCACCTCGATCACTACTCGCAAGAGGAA
TTCCTCTACGTCACGTCGGGCGGTATCCCTGCTGCCAGACTAGTCTCGGT
GCCTGCTAACGGCACGGAGGAGAAGAAGTCGCAGCGCGAGGCGTTGGCAG
AGGTGGAGGGTGCTGCGTCGGAGGATGAGGGTGCTCCTCCGAATGGGGGA
GAAGAGGGAGGTTAGGAGCGAGACGGAAAAGACCATCGAAGGAGAGCTCT
TTGCGGCTTTCGTGGCGGCTGGCGCCATCTCCAAGGCCAACGCAACCGAC
CCGAAGAAGTCATCGCTGGTGCGGTGCGCGCGTACCGACAAGGGTGTCCA
CGCTGCGGGAAACATTGTCTCCCTGAAGCTGATTGTCGAAGATGACGATA
TCATTCAGAAGATCAACGAGAAACTCAGCTCGCAGATTCGCGTATGGGAC
ATCCTCGTCACGAACAAGTCGTTCAGCAGTTATCAGCTGTGCGACTCTCG
CATTTACGAATACCTCATTCCAACTCACTGTTTCCTGCCGCCTCACCCCA
GCACTTACCTGGGCAAGAAGCTCTTCGAGTACGCCGAGAAGGAGGGTGAC
CTGGAGGGTTACAAGGCGCGACAGGAAGAGGTGGCGAGCTACTGGGAGGA
GACCGACGAGAAGTACGTCCGTCCGATCCTCGACAACACGCCCGAGGATA
TCCGCAAGCTCGTCGAGAAGGTCCTCCACCTGAACGATGAGGACCAGTCC
GCGCAAGACGACATGTTCCAGACACAAGACAAGCCTGCATCAGAGGAAAC
CACCGAACAGCCATCCTCCGAAGGAAAGCCCGCAGATGCTGAAAAAGACG
AGGCCGAAGAAGCGCGCCGACGTAAGATCTTCGAGACCGTCAAAGCCATC
AAAGCCGCCTATCTCCAGGCTAAGAGGGCCTACCGTATTCCGGCCCAACG
CCTGGCCCGCGTGCAGGAAGCCCTCGACAAGTACGTCGGAACGAATAACT
TCTTCAACTACACAATCCAAAAGACACATGCCGACCCATCCTCAAAACGT
CACATCAAGTCCTTCAAGATGGCCGAACAACCCATCATCATCAACGGCAC
CGAGTGGCTCAGCCTCAAGGTCCATGGCCAAAGTTTCATGATGCACCAGA
TCCGCAAGATGGTCGCCATGGCTGCCATGGTCGTGCGCTGCGGCTGTGAT
CCCCAGCGGATTGTCGAGACTTACGGCGCCAATAAGATCGCCATTCCCAA
GGCTCCCGGTCTGGGTCTGCTTCTTGAACGGCCCGTCTTCGACTCGTATA
ACCGGAAGACCCATGAGACGGGCAAAGACCCCATCGACTTCGACAAGCAT
GCCGATACCATTAATGAGTTCAAGCAGCGTGAGATTTACGATCGTATCTT
CCGTGAGGAAGAAGAAACTCATGCAAAGTCGGAATATGGTAGATAAGAGA
GCCCGGCACGATGCTCAGCAGGAAGCGAAACGTCGCAAGATCGAGAACGG
AGAGGAGGTTAGGGCTCCTGTATATGCGACGCAATTCTCCAAGGAGGACA
TCGAGAGTGAGCAGCGCCGCCCCAAGAAGAAGGTCGCCGTGCTGCTGGGA
TATTCGGGAACTGGATACAAGGGCATGCAATTATGCCGCTCCACATTTTC
CTGCGACGCTCTTTGGCCCCCCATCTGTCAGTTTCTGGCGCGCGCACTTC
TCTGCGTACCCCCCAAGCGCGGTTCTATTCTCCCGAGTACCTACGCTCGC
TAAAGGCCCGTCGCATCCCATGGACAATAACGAAGGAAGACCTCCGCAAG
CCGGAGGCGGAGCTGATCGAGGTCGTAAGAAGCGGAATATGGGACGATCC
GAGTGGAGTTTCTCTGCTTTCTTTGGCCACCTCGATCACTACTCGCAAGA
GGAATTCCTCTACGTCACGTCGGGCGGTATCCCTGCTGCCAGACTAGTCT
CGGTGCCTGCTAACGGCACGGAGGAGAAGAAGTCGCAGCGCGAGGCGTTG
GCAGAGGTGGAGGGTGCTGCGTCGGAGGATGAGGGTGCTCCTCCGAATGG
GGGAGAAGAGGGAGGTTAGGAGCGAGACGGAAAAGACCATCGAAGGAGAG
CTCTTTGCGGCTTTCGTGGCGGCTGGCGCCATCTCCAAGGCCAACGCAAC
CGACCCGAAGAAGTCATCGCTGGTGCGGTGCGCGCGTACCGACAAGGGTG
TCCACGCTGCGGGAAACATTGTCTCCCTGAAGCTGATTGTCGAAGATGAC
GATATCATTCAGAAGATCAACGAGAAACTCAGCTCGCAGATTCGCGTATG
GGACATCCTCGTCACGAACAAGTCGTTCAGCAGTTATCAGCTGTGCGACT
CTCGCATTTACGAATACCTCATTCCAACTCACTGTTTCCTGCCGCCTCAC
CCCAGCACTTACCTGGGCAAGAAGCTCTTCGAGTACGCCGAGAAGGAGGG
TGACCTGGAGGGTTACAAGGCGCGACAGGAAGAGGTGGCGAGCTACTGGG
AGGAGACCGACGAGAAGTACGTCCGTCCGATCCTCGACAACACGCCCGAG
GATATCCGCAAGCTCGTCGAGAAGGTCCTCCACCTGAACGATGAGGACCA
GTCCGCGCAAGACGACATGTTCCAGACACAAGACAAGCCTGCATCAGAGG
AAACCACCGAACAGCCATCCTCCGAAGGAAAGCCCGCAGATGCTGAAAAA
GACGAGGCCGAAGAAGCGCGCCGACGTAAGATCTTCGAGACCGTCAAAGC
CATCAAAGCCGCCTATCTCCAGGCTAAGAGGGCCTACCGTATTCCGGCCC
AACGCCTGGCCCGCGTGCAGGAAGCCCTCGACAAGTACGTCGGAACGAAT
AACTTCTTCAACTACACAATCCAAAAGACACATGCCGACCCATCCTCAAA
ACGTCACATCAAGTCCTTCAAGATGGCCGAACAACCCATCATCATCAACG
GCACCGAGTGGCTCAGCCTCAAGGTCCATGGCCAAAGTTTCATGATGCAC
CAGATCCGCAAGATGGTCGCCATGGCTGCCATGGTCGTGCGCTGCGGCTG
TGATCCCCAGCGGATTGTCGAGACTTACGGCGCCAATAAGATCGCCATTC
CCAAGGCTCCCGGTCTGGGTCTGCTTCTTGAACGGCCCGTCTTCGACTCG
TATAACCGGAAGACCCATGAGACGGGCAAAGACCCCATCGACTTCGACAA
GCATGCCGATACCATTAATGAGTTCAAGCAGCGTGAGATTTACGATCGTA
TCTTCCGTGAGGAAGAAGAAACTCATGCAAAGTCGGAATATGGTAGATAA
GAGAGCCCGGCACGATGCTCAGCAGGAAGCGAAACGTCGCAAGATCGAGA
ACGGAGAGGAGGTTAGGGCTCCTGTATATGCGACGCAATTCTCCAAGGAG
GACATCGAGAGTGAGCAGCGCCGCCCCAAGAAGAAGGTCGCCGTGCTGCT
GGGATATTCGGGAACTGGATACAAGGGCATGCAATTATGCCGCTCCACAT
TTTCCTGCGACGCTCTTTGGCCCCCCATCTGTCAGTTTCTGGCGCGCGCA
CTTCTCTGCGTACCCCCCAAGCGCGGTTCTATTCTCCCGAGTACCTACGC
TCGCTAAAGGCCCGTCGCATCCCATGGACAATAACGAAGGAAGACCTCCG
CAAGCCGGAGGCGGAGCTGATCGAGGTCGTAAGAAGCGGAATATGGGACG
ATCCGAGTGGAGTTTCTCTGCTTTCTTTGGCCACCTCGATCACTACTCGC
AAGAGGAATTCCTCTACGTCACGTCGGGCGGTATCCCTGCTGCCAGACTA
GTCTCGGTGCCTGCTAACGGCACGGAGGAGAAGAAGTCGCAGCGCGAGGC
GTTGGCAGAGGTGGAGGGTGCTGCGTCGGAGGATGAGGGTGCTCCTCCGA
ATGGGGGAGAAGAGGGAGGTTAGGAGCGAGACGGAAAAGACCATCGAAGG
AGAGCTCTTTGCGGCTTTCGTGGCGGCTGGCGCCATCTCCAAGGCCAACG
CAACCGACCCGAAGAAGTCATCGCTGGTGCGGTGCGCGCGTACCGACAAG
GGTGTCCACGCTGCGGGAAACATTGTCTCCCTGAAGCTGATTGTCGAAGA
TGACGATATCATTCAGAAGATCAACGAGAAACTCAGCTCGCAGATTCGCG
TATGGGACATCCTCGTCACGAACAAGTCGTTCAGCAGTTATCAGCTGTGC
GACTCTCGCATTTACGAATACCTCATTCCAACTCACTGTTTCCTGCCGCC
TCACCCCAGCACTTACCTGGGCAAGAAGCTCTTCGAGTACGCCGAGAAGG
AGGGTGACCTGGAGGGTTACAAGGCGCGACAGGAAGAGGTGGCGAGCTAC
TGGGAGGAGACCGACGAGAAGTACGTCCGTCCGATCCTCGACAACACGCC
CGAGGATATCCGCAAGCTCGTCGAGAAGGTCCTCCACCTGAACGATGAGG
ACCAGTCCGCGCAAGACGACATGTTCCAGACACAAGACAAGCCTGCATCA
GAGGAAACCACCGAACAGCCATCCTCCGAAGGAAAGCCCGCAGATGCTGA
AAAAGACGAGGCCGAAGAAGCGCGCCGACGTAAGATCTTCGAGACCGTCA
AAGCCATCAAAGCCGCCTATCTCCAGGCTAAGAGGGCCTACCGTATTCCG
GCCCAACGCCTGGCCCGCGTGCAGGAAGCCCTCGACAAGTACGTCGGAAC
GAATAACTTCTTCAACTACACAATCCAAAAGACACATGCCGACCCATCCT
CAAAACGTCACATCAAGTCCTTCAAGATGGCCGAACAACCCATCATCATC
AACGGCACCGAGTGGCTCAGCCTCAAGGTCCATGGCCAAAGTTTCATGAT
GCACCAGATCCGCAAGATGGTCGCCATGGCTGCCATGGTCGTGCGCTGCG
GCTGTGATCCCCAGCGGATTGTCGAGACTTACGGCGCCAATAAGATCGCC
ATTCCCAAGGCTCCCGGTCTGGGTCTGCTTCTTGAACGGCCCGTCTTCGA
CTCGTATAACCGGAAGACCCATGAGACGGGCAAAGACCCCATCGACTTCG
ACAAGCATGCCGATACCATTAATGAGTTCAAGCAGCGTGAGATTTACGAT
CGTATCTTCCGTGAGGAAGAAGAAACTCATGCAAAGTCGGAATATGGTAG
ATAAGAGAGCCCGGCACGATGCTCAGCAGGAAGCGAAACGTCGCAAGATC
GAGAACGGAGAGGAGGTTAGGGCTCCTGTATATGCGACGCAATTCTCCAA
GGAGGACATCGAGAGTGAGCAGCGCCGCCCCAAGAAGAAGGTCGCCGTGC
TGCTGGGATATTCGGGAACTGGATACAAGGGCATGCAATTATGCCGCTCC
ACATTTTCCTGCGACGCTCTTTGGCCCCCCATCTGTCAGTTTCTGGCGCG
CGCACTTCTCTGCGTACCCCCCAAGCGCGGTTCTATTCTCCCGAGTACCT
ACGCTCGCTAAAGGCCCGTCGCATCCCATGGACAATAACGAAGGAAGACC
TCCGCAAGCCGGAGGCGGAGCTGATCGAGGTCGTAAGAAGCGGAATATGG
GACGATCCGAGTGGAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0031119 | tRNA pseudouridine synthesis |
| GO:0009451 | RNA modification |
| GO:0001522 | pseudouridine synthesis |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0009982 | pseudouridine synthase activity |
| GO:0003723 | RNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR020103 |
| DBxref | InterPro:IPR041708 |
| DBxref | InterPro:IPR020097 |
| DBxref | InterPro:IPR001406 |
| DBxref | InterPro:IPR020095 |
| DBxref | PFAM:PF01416 |
| Product | tRNA pseudouridine synthase |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KZ851926.1 | supercontig | KZ851926.1:118411..120542 - |
|
