You are here

Home

M747DRAFT_270009-T1, M747DRAFT_270009-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_270009-T1
Unique NameM747DRAFT_270009-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851964.1:55328..56632+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_270009-T1 ID=M747DRAFT_270009-T1|Name=M747DRAFT_270009-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1305bp|location=Sequence derived from alignment at KZ851964.1:55328..56632+ (Aspergillus niger ATCC 13496)
ATGTCGGAGGCGAGTATACCTACTTTCCAGCCAACCGTCACGGGCCAGGA
GCTCGAGGCCATCCAAGAGGTACTCGCCAGCCGAACTCTTACGGGAAAAG
GCAAGTACACGGCACTGTGCCAGCGATGGATTGAATCAAGCATGCCACAT
GGCAAGGCCTTTGTCTTGAGCTCGTGCACTTCAGCCTTGGAGATTGCGGC
CCTCCTTGCCGATCTGCGACCAGGGGACGAAGTGATTGTACCGAGCTACA
CGTATGTGTCAACCGTGAATGCCTTTGTTGTCCATGGGGCGCTACCGGTT
TTTGTTGATGTGGAAGAGACGACCCTGAACATCGATGCGCAGAAAGTCGA
GGATGCCATCACGCCCCGGACCAAGGTCATTGTCCCGGTGCACTATGCAG
GGATCGCCTGCGACATGGACACCATCCTGGACATTGCCAGTCGGCATGAC
CTGCTCGTGGTTGAGGATGCCGCTATGGCCTGCGGCAGCACGTATCGAGG
ACGCGCGCTTGGAACCATAGGGCACCTTGGCTGCATCAGTTTCCAAGAGA
AGAAAGTATTCACTAGTGAAGGTCAGGGAGGGGCATTACTCGTCAACCGG
GACTCACTCGTCGCGCGGGCTGAAATCCTCTATGAACACGGCACGAACCG
AGCTCAGTTCCTGCGTGGCGAAGTGGATATCTATCGCTGGCTGGATGTCG
GGATTAACGCAACCCTGAGCGAGATTCAAGCAGCCTTCCTATATGCCCAG
TTGCAAGCCGCGCCGCAGATTCTTTCATGCCGCCGACGTCTCTGGTCTCG
CTATCACAGATGCCTGGCCCCTTTGGCCGACGCGGGTGTCATCTGTTTAC
CCCAACCGGCTGCGGAGGCGGACCATAACGCAGCCGTCTTCTGGCTTCGG
TTGACTGACGCCACAAACCGATCTGCATTCATTGAGCATATGGCGGCCGG
ACAAATTCAGACACAGGCACAGTTCGTGCCGCTACACTCTTCTCCATTCG
GCGAACGGTTCGGGCGTTTTCATGGCGAGGATCGGGTGACTACACGCGCC
GCAGCGGAGATTGTCTTGCTACCACTTTACGCGGGGCTCACAGAATGTCA
ACAGGAAATTGTCATTCGGCGCGTGTTAGGGTTCTGGCAGGAAGCCACAA
GCACCCCGAGAACGGAAGCTTCCCGCGATGCTGAAGTGAATAATTCTTAG
GCAATGATTTGCATCTGGAAATCTACCTATCAGTGCTTTCCTCATCCCTT
CGGAGCAGAAGGGGCGCGCTGCGAGCAGCAATGGTGAGCCTAGTTTAGTC
AAGCC
back to top

Coding sequence (CDS) from alignment at KZ851964.1:55328..56632+

>M747DRAFT_270009-T1 ID=M747DRAFT_270009-T1|Name=M747DRAFT_270009-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=1200bp|location=Sequence derived from alignment at KZ851964.1:55328..56632+ (Aspergillus niger ATCC 13496)
ATGTCGGAGGCGAGTATACCTACTTTCCAGCCAACCGTCACGGGCCAGGA
GCTCGAGGCCATCCAAGAGGTACTCGCCAGCCGAACTCTTACGGGAAAAG
GCAAGTACACGGCACTGTGCCAGCGATGGATTGAATCAAGCATGCCACAT
GGCAAGGCCTTTGTCTTGAGCTCGTGCACTTCAGCCTTGGAGATTGCGGC
CCTCCTTGCCGATCTGCGACCAGGGGACGAAGTGATTGTACCGAGCTACA
CGTATGTGTCAACCGTGAATGCCTTTGTTGTCCATGGGGCGCTACCGGTT
TTTGTTGATGTGGAAGAGACGACCCTGAACATCGATGCGCAGAAAGTCGA
GGATGCCATCACGCCCCGGACCAAGGTCATTGTCCCGGTGCACTATGCAG
GGATCGCCTGCGACATGGACACCATCCTGGACATTGCCAGTCGGCATGAC
CTGCTCGTGGTTGAGGATGCCGCTATGGCCTGCGGCAGCACGTATCGAGG
ACGCGCGCTTGGAACCATAGGGCACCTTGGCTGCATCAGTTTCCAAGAGA
AGAAAGTATTCACTAGTGAAGGTCAGGGAGGGGCATTACTCGTCAACCGG
GACTCACTCGTCGCGCGGGCTGAAATCCTCTATGAACACGGCACGAACCG
AGCTCAGTTCCTGCGTGGCGAAGTGGATATCTATCGCTGGCTGGATGTCG
GGATTAACGCAACCCTGAGCGAGATTCAAGCAGCCTTCCTATATGCCCAG
TTGCAAGCCGCGCCGCAGATTCTTTCATGCCGCCGACGTCTCTGGTCTCG
CTATCACAGATGCCTGGCCCCTTTGGCCGACGCGGGTGTCATCTGTTTAC
CCCAACCGGCTGCGGAGGCGGACCATAACGCAGCCGTCTTCTGGCTTCGG
TTGACTGACGCCACAAACCGATCTGCATTCATTGAGCATATGGCGGCCGG
ACAAATTCAGACACAGGCACAGTTCGTGCCGCTACACTCTTCTCCATTCG
GCGAACGGTTCGGGCGTTTTCATGGCGAGGATCGGGTGACTACACGCGCC
GCAGCGGAGATTGTCTTGCTACCACTTTACGCGGGGCTCACAGAATGTCA
ACAGGAAATTGTCATTCGGCGCGTGTTAGGGTTCTGGCAGGAAGCCACAA
GCACCCCGAGAACGGAAGCTTCCCGCGATGCTGAAGTGAATAATTCTTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
M747DRAFT_270009M747DRAFT_270009Aspergillus niger ATCC 13496gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_270009-T1.exon1M747DRAFT_270009-T1.exon1Aspergillus niger ATCC 13496exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_270009-T1.cdsM747DRAFT_270009-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_270009-T1.utr3p1M747DRAFT_270009-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_270009-T1M747DRAFT_270009-T1-proteinAspergillus niger ATCC 13496polypeptide


Properties
Property NameValue
NoteantiSMASH:Cluster_8519641.1
DBxrefInterPro:IPR015424
DBxrefInterPro:IPR000653
DBxrefInterPro:IPR015422
DBxrefInterPro:IPR015421
DBxrefInterPro:IPR012749
DBxrefPFAM:PF01041
Productlipopolysaccharide biosynthesis protein rffA
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851964.1supercontigKZ851964.1:55328..56632 +
Powered by Drupal