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M747DRAFT_281358-T1, M747DRAFT_281358-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_281358-T1
Unique NameM747DRAFT_281358-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851917.1:546219..547923+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_281358-T1 ID=M747DRAFT_281358-T1|Name=M747DRAFT_281358-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1705bp|location=Sequence derived from alignment at KZ851917.1:546219..547923+ (Aspergillus niger ATCC 13496)
GCTCATTCAACGACAATCTGGATTTGCTGGCCAAGTCCACGAGCATCATT
TCTCAATTCGATACTCTATAATGCTGAGTTGTATTGATGGTAAGCAACTG
TCCCTTTCTTCCGCGTCAATTGTTCTTGCTTGCATGATTATACAAATACT
ATAATCTGTCAATCCCCTGAAGCTCAACTAAAAAATCTCATTAAAACGAG
CATATGTGATTGAGAAACGTATCGAAAATGATTAGCATTTTCTTGCGCTT
TATGTTTCATCCATACATGTCATGGAAGCTGAACGCTAACGTTCATTCAG
TCGCACCAGATCCCTTGATAAATTGAATTGCCCTTAGTCGCTAAAATGGA
TATCGAACCCACCCTTCCTATTCCGATCTCGTATATTGGGGGTAGCTACT
TTCTCTTCTCAATTGATGCAGTTACGTATGTGAGACGCGAGTATCACATT
TGCGGCGTCTTAAGCGGCACATTGCCTCAAATCCCACAACAGAATGTCTT
CCTGGGCTTGCCATTGAAGCTAATGCCGGAAGAGGCCCGGTTGCTCGTGG
AGAAAGGTGTAGCATGCATTGTAGACGAGGTAAAAGTCCAAAAGGACGGA
ATGCGAGCCCTCATGGAGGAGGATCGCAAGAAGTATCTCCGTGAGCTAGA
ATCTCAAGGCCAGCATGCTATGCGACTACAGAACGACCGGAAGGAGCAGC
AACGCGAGAAGGCTTTAAAGAAAATAGAAGAAAAGAAGGCCGCAAAGGCC
AAAAAGTCTGCTGAAAGGCAGCAGGAGCAGCAGCCTGCCCCTCTTAATAA
TGAGGCTGCTGCTCAAGACCCGGTTGTTGACTTGTTCGCAAATGACCAGG
AGGGTACTGGCGAAATGTCGCGCCGTTCTTCGACTGCCACTGCTGCTCCC
TTTGGCACTGTCATGGGAGTCACGCCTGCTACATCTTATCCGCCTCTTCC
GTATGAGTGGTCTGCTGAGCAACAGCTACCGCTTCCTGATGTGCCTTCCT
CATACCCATTATTCGCTCACCTTCATTCCGAAGGATACTTCTTATCCCCT
GGGTTGCGATTCGGGTGTCAGTATCTTGCCTATCCCGGTGATCCTTTACG
GTTCCATTCACACTTCCTGAGTGTGTCTGCTGACTGGGATGAGGAGTTGG
ATTTGATGAGCATCGTTGCCGGTGGTCGACTAGGTACTGGTGTGAAGAAG
GGTTTCTTGATTGGAGGAGCTGAGAAGAAGATCGAGGGCTCGGATGCTGG
AGACCCCAGTAGTGTGAGGACTTTCAGCATTGAATGGGGTGGAATGTGAT
GTGGACTGTTTTCGACGTCCTTTTCGGTCTTCATTGGTCGTCTCCTGAGC
TAAGCAGCGCATGTCGCGCGCGCACCGCTTGCAGCATATGCCTGATAGCT
GCTTGCCTCAGTGGAACAGAAGCGTAACGTCAAAAGCAGTTGTGCGGCGT
TGCGCATTACCTTCATGCGCTCTCAAGTCTGGCAGAAATGCATACGGGCT
TGATTGCAGCAGCCATTCATCGGTACAGCTAGTAGAGCTGTTATCTGGCA
AGGCTAAACAAACTGGTCTACAGCTGTCGAATTCTCCAGCAGACACCCCA
GGCAGCACAGTCCGACATACAGGACTTTGATCGATCTCACTCCAGCGTTG
AAGATCCCTGCCATGGGTAAACTACAAAGATGAGATCAAATCGAAACATA
TCATC
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Coding sequence (CDS) from alignment at KZ851917.1:546219..547923+

>M747DRAFT_281358-T1 ID=M747DRAFT_281358-T1|Name=M747DRAFT_281358-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=954bp|location=Sequence derived from alignment at KZ851917.1:546219..547923+ (Aspergillus niger ATCC 13496)
ATGGATATCGAACCCACCCTTCCTATTCCGATCTCGTATATTGGGGGTAG
CTACTTTCTCTTCTCAATTGATGCAGTTACGTATGTGAGACGCGAGTATC
ACATTTGCGGCGTCTTAAGCGGCACATTGCCTCAAATCCCACAACAGAAT
GTCTTCCTGGGCTTGCCATTGAAGCTAATGCCGGAAGAGGCCCGGTTGCT
CGTGGAGAAAGGTGTAGCATGCATTGTAGACGAGGTAAAAGTCCAAAAGG
ACGGAATGCGAGCCCTCATGGAGGAGGATCGCAAGAAGTATCTCCGTGAG
CTAGAATCTCAAGGCCAGCATGCTATGCGACTACAGAACGACCGGAAGGA
GCAGCAACGCGAGAAGGCTTTAAAGAAAATAGAAGAAAAGAAGGCCGCAA
AGGCCAAAAAGTCTGCTGAAAGGCAGCAGGAGCAGCAGCCTGCCCCTCTT
AATAATGAGGCTGCTGCTCAAGACCCGGTTGTTGACTTGTTCGCAAATGA
CCAGGAGGGTACTGGCGAAATGTCGCGCCGTTCTTCGACTGCCACTGCTG
CTCCCTTTGGCACTGTCATGGGAGTCACGCCTGCTACATCTTATCCGCCT
CTTCCGTATGAGTGGTCTGCTGAGCAACAGCTACCGCTTCCTGATGTGCC
TTCCTCATACCCATTATTCGCTCACCTTCATTCCGAAGGATACTTCTTAT
CCCCTGGGTTGCGATTCGGGTGTCAGTATCTTGCCTATCCCGGTGATCCT
TTACGGTTCCATTCACACTTCCTGAGTGTGTCTGCTGACTGGGATGAGGA
GTTGGATTTGATGAGCATCGTTGCCGGTGGTCGACTAGGTACTGGTGTGA
AGAAGGGTTTCTTGATTGGAGGAGCTGAGAAGAAGATCGAGGGCTCGGAT
GCTGGAGACCCCAGTAGTGTGAGGACTTTCAGCATTGAATGGGGTGGAAT
GTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000214tRNA-intron endonuclease complex
Vocabulary: Biological Process
TermDefinition
GO:0006388tRNA splicing, via endonucleolytic cleavage and ligation
GO:0000379tRNA-type intron splice site recognition and cleavage
Vocabulary: Molecular Function
TermDefinition
GO:0000213tRNA-intron endonuclease activity
GO:0003676nucleic acid binding
GO:0004518nuclease activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
M747DRAFT_281358M747DRAFT_281358Aspergillus niger ATCC 13496gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_281358-T1M747DRAFT_281358-T1-proteinAspergillus niger ATCC 13496polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_281358-T1.utr5p1M747DRAFT_281358-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR
M747DRAFT_281358-T1.utr5p2M747DRAFT_281358-T1.utr5p2Aspergillus niger ATCC 13496five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_281358-T1.exon1M747DRAFT_281358-T1.exon1Aspergillus niger ATCC 13496exon
M747DRAFT_281358-T1.exon2M747DRAFT_281358-T1.exon2Aspergillus niger ATCC 13496exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_281358-T1.cdsM747DRAFT_281358-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_281358-T1.utr3p1M747DRAFT_281358-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09263U71
DBxrefInterPro:IPR036167
DBxrefInterPro:IPR006676
DBxrefInterPro:IPR006677
DBxrefInterPro:IPR016690
DBxrefInterPro:IPR011856
DBxrefPFAM:PF01974
ProducttRNA-splicing endonuclease subunit sen34
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851917.1supercontigKZ851917.1:546219..547923 +
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