|
Sequences
The following sequences are available for this feature:
mRNA from alignment at KZ851935.1:36668..38294+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >M747DRAFT_286011-T1 ID=M747DRAFT_286011-T1|Name=M747DRAFT_286011-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1627bp|location=Sequence derived from alignment at KZ851935.1:36668..38294+ (Aspergillus niger ATCC 13496) CCTGGCTGAAGCGCCCATCGCCGTTAGAGATTGATACCCGGGTGGATCGG
AGGGTCCCCTTGGTCTTTCCACCAATAATGGAGGTATCTCACTGCTTTGT
TCAGGAACAGAAGCTTAGCATGGACCAGTCTTTTACGTATAAAACTCTCC
AGGACTTCCGTCGTTGAGATGCTCTATCCAACAACACCTCACTCTTCCAC
TCCTTGTTCTTTCTTTCTGTTGACCAGACCCCGTCCATTCTTTTGACCGA
AACCTGTTCTGTTGACCAGAACCTATTCCAACAATCACCATGCACTCTTA
CCAGCTTCTTGGCCTGGCCGCTGTCGGCTCCCTCGTCTCTGCCGCCCCCG
CTCCTTCTCGCGTCTCCGAGTTCGCTAAGAAGGCCTCTACCTGCACCTTC
ACCTCTGCCTCTGAGGCCAGCGAGAGCATCTCCAGCTGCTCCGATGTTGT
CCTGAGCAGCATCGAGGTCCCCGCTGGCGAGACCCTGGACCTGTCCGATG
CTGCTGATGGCTCCACCGTATGTGCTCTCAACCGTCTTCCACCCTGGCTA
TCACGCTAACACCATCTAGATCACCTTCGAGGGCACCACTTCCTTCGGAT
ACAAGGAATGGAAGGGTCCCCTGATCCGCTTCGGTGGTAAGGATCTGACC
GTCACCATGGCCGACGGCGCTGTCATCGACGGTGACGGTTCCCGCTGGTG
GGACAGCAAGGGTACCAACGGTGGCAAGACCAAGCCCAAGTTCATGTACA
TCCACGACGTTGAGGACTCGACCTTCAAGGGCATCAACATCAAGAATACT
CCCGTCCAGGCCATCAGTGTCCAGGCTACCAACGTCCACCTGAACGACTT
CACCATCGACAACTCCGACGGTGATGACAACGGTGGCCACAACACCGACG
GTTTCGACATCAGCGAGTCCACCGGTGTCTACATCAGCGGTGCTACCGTC
AAGAACCAGGACGACTGCATTGCCATCAACTCTGGCGAGGTACGATATCC
CTATCCCACTATCATTCCTTCCATTCATATCGCTAACAATCAAACCCACA
GAGCATCTCTTTCACCGGCGGTACCTGCTCCGGTGGCCACGGTCTCTCCA
TCGGCTCTGTCGGTGGCCGTGATGACAACACCGTCAAGAACGTGACCATC
TCCGACTCCACTGTCAGCAACTCCGCCAATGGTGTCCGCATCAAGACCAT
CTACAAGGAGACCGGCGATGTCAGCGAGATCACCTACTCCAACATCCAGC
TCTCCGGCATCACCGACTACGGTATCGTCATCGAGCAGGACTACGAGAAC
GGCTCTCCCACCGGCACCCCCTCCACCGGTATCCCCATCACTGATGTCAC
TGTTGACGGTGTCACCGGCACTCTTGAGGATGACGCCACCCAGGTCTACA
TTCTCTGCGGTGACGGCTCTTGCTCTGACTGGACCTGGTCCGGTGTTGAC
CTCTCTGGTGGCAAGACCAGCGATAAATGCGAGAACGTTCCTTCCGGTGC
TTCTTGCTAAATCATTCCTCCGGAGGCGAGGCAACGTCTGTAGGACGTCT
GGTTGTATATATCGATCCACACTTGACATGTACTAGTTAGGTGGTTTTAC
TGCCATAGTGTTAGTGAATAATAGGAG back to topCoding sequence (CDS) from alignment at KZ851935.1:36668..38294+ >M747DRAFT_286011-T1 ID=M747DRAFT_286011-T1|Name=M747DRAFT_286011-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=3321bp|location=Sequence derived from alignment at KZ851935.1:36668..38294+ (Aspergillus niger ATCC 13496) ATGCACTCTTACCAGCTTCTTGGCCTGGCCGCTGTCGGCTCCCTCGTCTC TGCCGCCCCCGCTCCTTCTCGCGTCTCCGAGTTCGCTAAGAAGGCCTCTA CCTGCACCTTCACCTCTGCCTCTGAGGCCAGCGAGAGCATCTCCAGCTGC TCCGATGTTGTCCTGAGCAGCATCGAGGTCCCCGCTGGCGAGACCCTGGA CCTGTCCGATGCTGCTGATGGCTCCACCATCACCTTCGAGGGCACCACTT CCTTCGGATACAAGGAATGGAAGGGTCCCCTGATCCGCTTCGGTGGTAAG GATCTGACCGTCACCATGGCCGACGGCGCTGTCATCGACGGTGACGGTTC CCGCTGGTGGGACAGCAAGGGTACCAACGGTGGCAAGACCAAGCCCAAGT TCATGTACATCCACGACGTTGAGGACTCGACCTTCAAGGGCATCAACATC AAGAATACTCCCGTCCAGGCCATCAGTGTCCAGGCTACCAACGTCCACCT GAACGACTTCACCATCGACAACTCCGACGGTGATGACAACGGTGGCCACA ACACCGACGGTTTCGACATCAGCGAGTCCACCGGTGTCTACATCAGCGGT GCTACCGTCAAGAACCAGGACGACTGCATTGCCATCAACTCTGGCGAGAG CATCTCTTTCACCGGCGGTACCTGCTCCGGTGGCCACGGTCTCTCCATCG GCTCTGTCGGTGGCCGTGATGACAACACCGTCAAGAACGTGACCATCTCC GACTCCACTGTCAGCAACTCCGCCAATGGTGTCCGCATCAAGACCATCTA CAAGGAGACCGGCGATGTCAGCGAGATCACCTACTCCAACATCCAGCTCT CCGGCATCACCGACTACGGTATCGTCATCGAGCAGGACTACGAGAACGGC TCTCCCACCGGCACCCCCTCCACCGGTATCCCCATCACTGATGTCACTGT TGACGGTGTCACCGGCACTCTTGAGGATGACGCCACCCAGGTCTACATTC TCTGCGGTGACGGCTCTTGCTCTGACTGGACCTGGTCCGGTGTTGACCTC TCTGGTGGCAAGACCAGCGATAAATGCGAGAACGTTCCTTCCGGTGCTTC TTGCTAAATGCACTCTTACCAGCTTCTTGGCCTGGCCGCTGTCGGCTCCC TCGTCTCTGCCGCCCCCGCTCCTTCTCGCGTCTCCGAGTTCGCTAAGAAG GCCTCTACCTGCACCTTCACCTCTGCCTCTGAGGCCAGCGAGAGCATCTC CAGCTGCTCCGATGTTGTCCTGAGCAGCATCGAGGTCCCCGCTGGCGAGA CCCTGGACCTGTCCGATGCTGCTGATGGCTCCACCATCACCTTCGAGGGC ACCACTTCCTTCGGATACAAGGAATGGAAGGGTCCCCTGATCCGCTTCGG TGGTAAGGATCTGACCGTCACCATGGCCGACGGCGCTGTCATCGACGGTG ACGGTTCCCGCTGGTGGGACAGCAAGGGTACCAACGGTGGCAAGACCAAG CCCAAGTTCATGTACATCCACGACGTTGAGGACTCGACCTTCAAGGGCAT CAACATCAAGAATACTCCCGTCCAGGCCATCAGTGTCCAGGCTACCAACG TCCACCTGAACGACTTCACCATCGACAACTCCGACGGTGATGACAACGGT GGCCACAACACCGACGGTTTCGACATCAGCGAGTCCACCGGTGTCTACAT CAGCGGTGCTACCGTCAAGAACCAGGACGACTGCATTGCCATCAACTCTG GCGAGAGCATCTCTTTCACCGGCGGTACCTGCTCCGGTGGCCACGGTCTC TCCATCGGCTCTGTCGGTGGCCGTGATGACAACACCGTCAAGAACGTGAC CATCTCCGACTCCACTGTCAGCAACTCCGCCAATGGTGTCCGCATCAAGA CCATCTACAAGGAGACCGGCGATGTCAGCGAGATCACCTACTCCAACATC CAGCTCTCCGGCATCACCGACTACGGTATCGTCATCGAGCAGGACTACGA GAACGGCTCTCCCACCGGCACCCCCTCCACCGGTATCCCCATCACTGATG TCACTGTTGACGGTGTCACCGGCACTCTTGAGGATGACGCCACCCAGGTC TACATTCTCTGCGGTGACGGCTCTTGCTCTGACTGGACCTGGTCCGGTGT TGACCTCTCTGGTGGCAAGACCAGCGATAAATGCGAGAACGTTCCTTCCG GTGCTTCTTGCTAAATGCACTCTTACCAGCTTCTTGGCCTGGCCGCTGTC GGCTCCCTCGTCTCTGCCGCCCCCGCTCCTTCTCGCGTCTCCGAGTTCGC TAAGAAGGCCTCTACCTGCACCTTCACCTCTGCCTCTGAGGCCAGCGAGA GCATCTCCAGCTGCTCCGATGTTGTCCTGAGCAGCATCGAGGTCCCCGCT GGCGAGACCCTGGACCTGTCCGATGCTGCTGATGGCTCCACCATCACCTT CGAGGGCACCACTTCCTTCGGATACAAGGAATGGAAGGGTCCCCTGATCC GCTTCGGTGGTAAGGATCTGACCGTCACCATGGCCGACGGCGCTGTCATC GACGGTGACGGTTCCCGCTGGTGGGACAGCAAGGGTACCAACGGTGGCAA GACCAAGCCCAAGTTCATGTACATCCACGACGTTGAGGACTCGACCTTCA AGGGCATCAACATCAAGAATACTCCCGTCCAGGCCATCAGTGTCCAGGCT ACCAACGTCCACCTGAACGACTTCACCATCGACAACTCCGACGGTGATGA CAACGGTGGCCACAACACCGACGGTTTCGACATCAGCGAGTCCACCGGTG TCTACATCAGCGGTGCTACCGTCAAGAACCAGGACGACTGCATTGCCATC AACTCTGGCGAGAGCATCTCTTTCACCGGCGGTACCTGCTCCGGTGGCCA CGGTCTCTCCATCGGCTCTGTCGGTGGCCGTGATGACAACACCGTCAAGA ACGTGACCATCTCCGACTCCACTGTCAGCAACTCCGCCAATGGTGTCCGC ATCAAGACCATCTACAAGGAGACCGGCGATGTCAGCGAGATCACCTACTC CAACATCCAGCTCTCCGGCATCACCGACTACGGTATCGTCATCGAGCAGG ACTACGAGAACGGCTCTCCCACCGGCACCCCCTCCACCGGTATCCCCATC ACTGATGTCACTGTTGACGGTGTCACCGGCACTCTTGAGGATGACGCCAC CCAGGTCTACATTCTCTGCGGTGACGGCTCTTGCTCTGACTGGACCTGGT CCGGTGTTGACCTCTCTGGTGGCAAGACCAGCGATAAATGCGAGAACGTT CCTTCCGGTGCTTCTTGCTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
Term | Definition |
GO:0005975 | carbohydrate metabolic process |
Vocabulary: Molecular Function
Term | Definition |
GO:0004650 | polygalacturonase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Properties
Property Name | Value |
Note | SECRETED:SignalP(1-18) |
Note | CAZy:GH28 |
DBxref | InterPro:IPR011050 |
DBxref | InterPro:IPR000743 |
DBxref | InterPro:IPR012334 |
DBxref | InterPro:IPR006626 |
DBxref | PFAM:PF00295 |
Product | polygalacturonase pgaI |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
KZ851935.1 | supercontig | KZ851935.1:36668..38294 + |
|