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M747DRAFT_292453-T1, M747DRAFT_292453-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_292453-T1
Unique NameM747DRAFT_292453-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851901.1:726500..727755+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_292453-T1 ID=M747DRAFT_292453-T1|Name=M747DRAFT_292453-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1256bp|location=Sequence derived from alignment at KZ851901.1:726500..727755+ (Aspergillus niger ATCC 13496)
GCCGCAAGTTCGTCGCCGACGGTGTCTTCTATGCCGAGCTGAACGAGTTC
TTCCAGCGCGAGCTGGCTGAGGAGGGATACTCCGGCGTCGAAGTCCGTGT
CACTCCCACCGTCACCGACATCAGTACGTCCGCCCGATATTTCATTTTGC
ATTTGATTCCAGATCCTGTGTGTTGTGTTGGAAAAGGCCGGAAATTGGAG
ATTGGAAGAATCGACCGGGGAAAAGAATGGTGATCCGGGAGGAGGAAAAG
AAAAACAGTTATCGGGAATACGGCCGGGAATATCAACCAACCACGGGGAA
CTACTGGAATTGGAGACAATTTTATATACAAAGGAAGATGGAATATGTGC
CAGTTGCTAACGGATGCTTTCTTTACAGTCATCCGTGCCACCCACACCCA
GGAGGTTCTCGGTGAGCAGGGCCGCCGCATCCGCGAGCTCACCTCCCTCA
TCCAGAAGCGCTTCAAGTTCCCCGAGAACTCCGTTTCCCTCTATGCCGCT
AAGGTCCAGAACCGCGGTCTCTCCGCCGTCGCTCAGTGCGAGTCCCTCCG
CTACAAGCTTCTCAACGGTCTGGCCGTCCGCCGTGCCTGCTACGGTGTTC
TCCGTTTCATCATGGAGAGCGGTGCCAAGGGTTGCGAGGTCGTCGTCTCC
GGAAAGCTCCGTGCTGCCCGTGCCAAGTCCATGAAGTTCACTGTACGTCT
ACCAACAGCGATTGATTTTGTTTTTCGAATGGTCGGATCGGTCCCGAAGC
AGTGGTGGAATTTGCGCATATCCAACGACAACGATGCCTACTACGATCTG
CAAGAACGAAGCAACTGTGCAAAGGACCGGACCGAAGCTCTACACCATTC
GAAACACTCCATCATATGCATGCTATAACGGTATCAGAAAACTAACAACA
ATTCTTCTCAATAGGACGGTTTCATGATCCACTCCGGTCAGCCCGCCAAG
GAATTCATCGACAGCGCTACCCGCCACGTTCTCCTCCGCCAGGGTGTCCT
CGGTATCAAGGTTAAGATCATGCGCGGTTCCGACCCCGAGGGCAAGGCCG
GTCCCCAGAAGACTCTCCCCGATGCCGTCACCATCATCGAGCCCAAGGAG
GAGCAGCCCGTCCTGCAGCCCATGAGCCAGGACTACGGCGCCAAGGCTCT
TGCCGCTCAGCAGGCCGCCGAGCAGCAGCGTCTGGCCGAGCAGCAGGCCA
CCGAGGCCCAGGAGGGTGCCGGTGCCGAGGCTTACGCCCAGGAGTAAAGA
AAAAAA
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Coding sequence (CDS) from alignment at KZ851901.1:726500..727755+

>M747DRAFT_292453-T1 ID=M747DRAFT_292453-T1|Name=M747DRAFT_292453-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=1362bp|location=Sequence derived from alignment at KZ851901.1:726500..727755+ (Aspergillus niger ATCC 13496)
ATGTGCCAGTTGCTAACGGATGCTTTCTTTACAGTCATCCGTGCCACCCA
CACCCAGGAGGTTCTCGGTGAGCAGGGCCGCCGCATCCGCGAGCTCACCT
CCCTCATCCAGAAGCGCTTCAAGTTCCCCGAGAACTCCGTTTCCCTCTAT
GCCGCTAAGGTCCAGAACCGCGGTCTCTCCGCCGTCGCTCAGTGCGAGTC
CCTCCGCTACAAGCTTCTCAACGGTCTGGCCGTCCGCCGTGCCTGCTACG
GTGTTCTCCGTTTCATCATGGAGAGCGGTGCCAAGGGTTGCGAGGTCGTC
GTCTCCGGAAAGCTCCGTGCTGCCCGTGCCAAGTCCATGAAGTTCACTGA
CGGTTTCATGATCCACTCCGGTCAGCCCGCCAAGGAATTCATCGACAGCG
CTACCCGCCACGTTCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGTTAAG
ATCATGCGCGGTTCCGACCCCGAGGGCAAGGCCGGTCCCCAGAAGACTCT
CCCCGATGCCGTCACCATCATCGAGCCCAAGGAGGAGCAGCCCGTCCTGC
AGCCCATGAGCCAGGACTACGGCGCCAAGGCTCTTGCCGCTCAGCAGGCC
GCCGAGCAGCAGCGTCTGGCCGAGCAGCAGGCCACCGAGGCCCAGGAGGG
TGCCGGTGCCGAGGCTTACGCCCAGGAGTAAATGTGCCAGTTGCTAACGG
ATGCTTTCTTTACAGTCATCCGTGCCACCCACACCCAGGAGGTTCTCGGT
GAGCAGGGCCGCCGCATCCGCGAGCTCACCTCCCTCATCCAGAAGCGCTT
CAAGTTCCCCGAGAACTCCGTTTCCCTCTATGCCGCTAAGGTCCAGAACC
GCGGTCTCTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTTCTC
AACGGTCTGGCCGTCCGCCGTGCCTGCTACGGTGTTCTCCGTTTCATCAT
GGAGAGCGGTGCCAAGGGTTGCGAGGTCGTCGTCTCCGGAAAGCTCCGTG
CTGCCCGTGCCAAGTCCATGAAGTTCACTGACGGTTTCATGATCCACTCC
GGTCAGCCCGCCAAGGAATTCATCGACAGCGCTACCCGCCACGTTCTCCT
CCGCCAGGGTGTCCTCGGTATCAAGGTTAAGATCATGCGCGGTTCCGACC
CCGAGGGCAAGGCCGGTCCCCAGAAGACTCTCCCCGATGCCGTCACCATC
ATCGAGCCCAAGGAGGAGCAGCCCGTCCTGCAGCCCATGAGCCAGGACTA
CGGCGCCAAGGCTCTTGCCGCTCAGCAGGCCGCCGAGCAGCAGCGTCTGG
CCGAGCAGCAGGCCACCGAGGCCCAGGAGGGTGCCGGTGCCGAGGCTTAC
GCCCAGGAGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS3M747DRAFT_292453Aspergillus niger ATCC 13496gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_292453-T1.utr5p1M747DRAFT_292453-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_292453-T1.exon1M747DRAFT_292453-T1.exon1Aspergillus niger ATCC 13496exon
M747DRAFT_292453-T1.exon2M747DRAFT_292453-T1.exon2Aspergillus niger ATCC 13496exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_292453-T1.cdsM747DRAFT_292453-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_292453-T1.utr3p1M747DRAFT_292453-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_292453-T1M747DRAFT_292453-T1-proteinAspergillus niger ATCC 13496polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR009019
DBxrefInterPro:IPR018280
DBxrefInterPro:IPR005703
DBxrefInterPro:IPR001351
DBxrefInterPro:IPR015946
DBxrefInterPro:IPR004044
DBxrefInterPro:IPR036419
DBxrefPFAM:PF00189
DBxrefPFAM:PF07650
Product40S ribosomal protein S3
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851901.1supercontigKZ851901.1:726500..727755 +
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