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M747DRAFT_292630-T1, M747DRAFT_292630-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_292630-T1
Unique NameM747DRAFT_292630-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851902.1:179213..181001+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_292630-T1 ID=M747DRAFT_292630-T1|Name=M747DRAFT_292630-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1789bp|location=Sequence derived from alignment at KZ851902.1:179213..181001+ (Aspergillus niger ATCC 13496)
TGCAGCATCATTTTGCCAACAGTACGGCGGGAGTTTCCAGTGGTATATAT
ATATAATATTACTCTATCAGGTGATTCAATAAATTCCATACCTAAACGCT
TGTCGGTCAGGCAACTAATCCATCCAAAGGTCCACTGAGCAAAGGAAACA
GTGGCAAAGCAAAGCGAAAGGCTAGAAGTTGCGCACCAAGTGATATTCAT
ATCTATTTGGATACTGTGATTCACTCCCTACTTCATCTATACAGTGTCCT
GCTCGCTTTTTGGGCGCCTGTACACTTACAGCCCTCATAAAAGTCCGAGA
TATTCAATATCGCTCCCAGCTATTTCACTATTTTGGTATACGCACCTTTG
GATATAGCCAAGACTACAAAATGAACGCACCAGACCGGTAGGTGGAACGT
TCTTCTTACATCTACGCAGTCTATCTTGTAGCATGCTTTATTCCCACTTG
GTTTCCGCGCCCCTTCCTCTCCTCCCCCACCTTTTGGCTTGTTCTAGGTT
CGGGAGCTGTTCGCTGGTGGGAATGGTGTGACTGAAGTCTCAATGCGGAC
GGTGCCATTAACCGGGCACATGCTCTTGCCTTCCCCCCTCCATTCACTGC
CCCAGAGTGCCGAACTATGTTATGGACTCTACTCCTGTCCCTCTTCCTCT
CCCTCAGTTCATTTCAATGTTTATGCCCCTTGTCCAGATCTCTCATTGAA
TGGATTGACTTCGTACTTTGCGTTGTCTTCACCCCCTAGCATTCCTGTCA
TATTGTGAATCTTTCTCGAACACAACGATTTTAAGAATGGAATCCATCAT
GCCTGCAGAAATGGTGTATGCGCGCCTGAAGAATGGCAGTGGCGGATCTC
GCGTTCGCTGCCAGTCTACCGTCAACGTTTCTCATGACCAGCAGCCGAGG
TCCGCTTCGGGTTTTCTTTGAAGATTCTACTTGCCTTCATTTGTGAAGCT
TCTAATACATTCGGTCCACTGACTCGGTATGAAACCTAGATACGAATCGT
TCGTTCTTGCGAATGGCGAGAATAAAGTCGAGATGGAGATCGATACTCGT
ATGTCATCCAAACCTCGCACCTAAACGGTCTGCGTTCATTTCTGACATGG
GCTTCTTGTGCTAGGAATCCCATCTTCTGCCATCTTCACCTTCAATAAGG
AAGATCACACGTTGGGAAATTTGATCCGCTCTCGCCTCTTGCAAAGCTCT
CATGTTCTCTTCGCTGCGTACAAGGTATGTCGGCGATCGTGATTTATCCT
CGTTTCTATTTCCGGGCATTCTTCATGCTCCCAGTTGCTGCTTTTATCAG
AGCTGTGGGGTTAGTTTGCGTAAGGGTCTGACGTGACTGTCATAGGTTCC
CCATCCGCTTGTTCCCAATTTCCAGCTTCGAGTTCAGACCGATGGCGATA
TCACCCCAAAGGATGCGGTAATTGCAGCCTGCCATGAGCTTGTTCGGGAC
CTGGGTATCCTCTCTCGGGAGTTTACTAAGGAATATGAGCTCCGTAAGAT
GGTGGGGGCTACCGCCCAGCAGCAGAATGGCGTCCAGGATGGTGTTTAGC
CATCAACAGGTGGAGATAGGGCATGAAGAGCTGGGTCAGCGGTCACTCAC
ATGCTTTCGCTTCAGATATACGCAGCTGGTCATGCGTGTCTTTGTTTCAT
GGTCATACCCTTTATTCTATGTTTGTTCTCTTTGCTTCCAGTGATTAGCG
GGACCAAGCCCTTCGCTCCAACCTGCCTTGGAACAGAAAGTCATTTGCTG
CCGTAGCTGTCAATCAGTCAACACGTCCATATATCTGCC
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Coding sequence (CDS) from alignment at KZ851902.1:179213..181001+

>M747DRAFT_292630-T1 ID=M747DRAFT_292630-T1|Name=M747DRAFT_292630-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=1560bp|location=Sequence derived from alignment at KZ851902.1:179213..181001+ (Aspergillus niger ATCC 13496)
ATGAACGCACCAGACCGATACGAATCGTTCGTTCTTGCGAATGGCGAGAA
TAAAGTCGAGATGGAGATCGATACTCGAATCCCATCTTCTGCCATCTTCA
CCTTCAATAAGGAAGATCACACGTTGGGAAATTTGATCCGCTCTCGCCTC
TTGCAAAGCTCTCATGTTCTCTTCGCTGCGTACAAGGTTCCCCATCCGCT
TGTTCCCAATTTCCAGCTTCGAGTTCAGACCGATGGCGATATCACCCCAA
AGGATGCGGTAATTGCAGCCTGCCATGAGCTTGTTCGGGACCTGGGTATC
CTCTCTCGGGAGTTTACTAAGGAATATGAGCTCCGTAAGATGGTGGGGGC
TACCGCCCAGCAGCAGAATGGCGTCCAGGATGGTGTTTAGATGAACGCAC
CAGACCGATACGAATCGTTCGTTCTTGCGAATGGCGAGAATAAAGTCGAG
ATGGAGATCGATACTCGAATCCCATCTTCTGCCATCTTCACCTTCAATAA
GGAAGATCACACGTTGGGAAATTTGATCCGCTCTCGCCTCTTGCAAAGCT
CTCATGTTCTCTTCGCTGCGTACAAGGTTCCCCATCCGCTTGTTCCCAAT
TTCCAGCTTCGAGTTCAGACCGATGGCGATATCACCCCAAAGGATGCGGT
AATTGCAGCCTGCCATGAGCTTGTTCGGGACCTGGGTATCCTCTCTCGGG
AGTTTACTAAGGAATATGAGCTCCGTAAGATGGTGGGGGCTACCGCCCAG
CAGCAGAATGGCGTCCAGGATGGTGTTTAGATGAACGCACCAGACCGATA
CGAATCGTTCGTTCTTGCGAATGGCGAGAATAAAGTCGAGATGGAGATCG
ATACTCGAATCCCATCTTCTGCCATCTTCACCTTCAATAAGGAAGATCAC
ACGTTGGGAAATTTGATCCGCTCTCGCCTCTTGCAAAGCTCTCATGTTCT
CTTCGCTGCGTACAAGGTTCCCCATCCGCTTGTTCCCAATTTCCAGCTTC
GAGTTCAGACCGATGGCGATATCACCCCAAAGGATGCGGTAATTGCAGCC
TGCCATGAGCTTGTTCGGGACCTGGGTATCCTCTCTCGGGAGTTTACTAA
GGAATATGAGCTCCGTAAGATGGTGGGGGCTACCGCCCAGCAGCAGAATG
GCGTCCAGGATGGTGTTTAGATGAACGCACCAGACCGATACGAATCGTTC
GTTCTTGCGAATGGCGAGAATAAAGTCGAGATGGAGATCGATACTCGAAT
CCCATCTTCTGCCATCTTCACCTTCAATAAGGAAGATCACACGTTGGGAA
ATTTGATCCGCTCTCGCCTCTTGCAAAGCTCTCATGTTCTCTTCGCTGCG
TACAAGGTTCCCCATCCGCTTGTTCCCAATTTCCAGCTTCGAGTTCAGAC
CGATGGCGATATCACCCCAAAGGATGCGGTAATTGCAGCCTGCCATGAGC
TTGTTCGGGACCTGGGTATCCTCTCTCGGGAGTTTACTAAGGAATATGAG
CTCCGTAAGATGGTGGGGGCTACCGCCCAGCAGCAGAATGGCGTCCAGGA
TGGTGTTTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005665RNA polymerase II, core complex
Vocabulary: Molecular Function
TermDefinition
GO:0001055RNA polymerase II activity
GO:0003677DNA binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0046983protein dimerization activity
Vocabulary: Biological Process
TermDefinition
GO:0006366transcription by RNA polymerase II
GO:0006351transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
M747DRAFT_292630M747DRAFT_292630Aspergillus niger ATCC 13496gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_292630-T1M747DRAFT_292630-T1-proteinAspergillus niger ATCC 13496polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_292630-T1.utr5p1M747DRAFT_292630-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR
M747DRAFT_292630-T1.utr5p2M747DRAFT_292630-T1.utr5p2Aspergillus niger ATCC 13496five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_292630-T1.exon1M747DRAFT_292630-T1.exon1Aspergillus niger ATCC 13496exon
M747DRAFT_292630-T1.exon2M747DRAFT_292630-T1.exon2Aspergillus niger ATCC 13496exon
M747DRAFT_292630-T1.exon3M747DRAFT_292630-T1.exon3Aspergillus niger ATCC 13496exon
M747DRAFT_292630-T1.exon4M747DRAFT_292630-T1.exon4Aspergillus niger ATCC 13496exon
M747DRAFT_292630-T1.exon5M747DRAFT_292630-T1.exon5Aspergillus niger ATCC 13496exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_292630-T1.cdsM747DRAFT_292630-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_292630-T1.utr3p1M747DRAFT_292630-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG0926591L
DBxrefInterPro:IPR037685
DBxrefInterPro:IPR008193
DBxrefInterPro:IPR036603
DBxrefInterPro:IPR009025
DBxrefPFAM:PF13656
DBxrefPFAM:PF01193
ProductRBP11-like subunits of RNA polymerase
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851902.1supercontigKZ851902.1:179213..181001 +
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