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M747DRAFT_292672-T1, M747DRAFT_292672-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_292672-T1
Unique NameM747DRAFT_292672-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851902.1:297697..298665+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_292672-T1 ID=M747DRAFT_292672-T1|Name=M747DRAFT_292672-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=969bp|location=Sequence derived from alignment at KZ851902.1:297697..298665+ (Aspergillus niger ATCC 13496)
GCCCGCTTCATTTTCTATATCAGATCTAGGCGAGGGACTCTTGTTTCCAC
CTAGAAGAAAAACAGTAAGTCATCTGGGGAGATAAATTGTTTGACTTGAG
AGACACGTGCTGAGCTGAAAGTAGCCGCTTAATACCCTAATCAATTCGCA
ATGGCGTCACAACTTCTTCCTCTTGGTAATTGACCCTGTCAGAAGCCGCG
TATACATGGCGATCGTTTGATTGATTGTTTATTAACATGCACGACAGAAC
TGATCGACAAGTGTGTCGGATCCAGGATATGGGTCATCATGAAGAATGAC
AAAGGTCGGCATGAACATCTCCCTGCGGGGGAGGGGTAGACGATAAGCTA
GCTAGCTAACATGCATTCAGAATTCGCTGGAACGCTGCTTGGATTCGATG
ACTACGTTAGTAAGTATATTTCCTATCGTCGGTTTACGGTGTATGAGATA
GAGCGTGAACTGACCTGCTACAGACATGGTCTTGGAGGACGTGACTGAGT
TGTAAGTCCCTATATCTGCTGTCTGGATTGAGCTTCCTATCTCTGGAGCT
CTTCTTTCTTAGCTGTTGTTCTCTGTGTGTGAAGTAAAGACATTACTAAA
CATGCGACAGCGATTACTCCGGCTCTCAAGTGAAGCTCCCCAAGATTCTG
TTGAATGGAAACAACGTCTGCATGGTATGCCTCCAGCCGCGCCCTTTCTG
TTACTGATTATGCTCCATACTAACACTTTCAATTATCAAGTTGATCCCCG
GTGGTGAGGGACCCGTCGGTAGCTCTTAGGCCATGATATCCACGATTCTT
CTTCTTTGATATGTCAAAATGATTTTAGAATGAACGCTCATGATTGAGAT
AGAAAGTAGTAATGATGGAGTTTACGTCTGGCATTAAACCCTTGGGCAGT
AAGGTGTCGATTGTTACAGATGCAATTGGTTGTAGTTGTCACAGTCAGAC
TACAGAGTACTCTCTTCTG
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Coding sequence (CDS) from alignment at KZ851902.1:297697..298665+

>M747DRAFT_292672-T1 ID=M747DRAFT_292672-T1|Name=M747DRAFT_292672-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=1512bp|location=Sequence derived from alignment at KZ851902.1:297697..298665+ (Aspergillus niger ATCC 13496)
ATGGCGTCACAACTTCTTCCTCTTGAACTGATCGACAAGTGTGTCGGATC
CAGGATATGGGTCATCATGAAGAATGACAAAGAATTCGCTGGAACGCTGC
TTGGATTCGATGACTACGTTAACATGGTCTTGGAGGACGTGACTGAGTTC
GATTACTCCGGCTCTCAAGTGAAGCTCCCCAAGATTCTGTTGAATGGAAA
CAACGTCTGCATGTTGATCCCCGGTGGTGAGGGACCCGTCGGTAGCTCTT
AGATGGCGTCACAACTTCTTCCTCTTGAACTGATCGACAAGTGTGTCGGA
TCCAGGATATGGGTCATCATGAAGAATGACAAAGAATTCGCTGGAACGCT
GCTTGGATTCGATGACTACGTTAACATGGTCTTGGAGGACGTGACTGAGT
TCGATTACTCCGGCTCTCAAGTGAAGCTCCCCAAGATTCTGTTGAATGGA
AACAACGTCTGCATGTTGATCCCCGGTGGTGAGGGACCCGTCGGTAGCTC
TTAGATGGCGTCACAACTTCTTCCTCTTGAACTGATCGACAAGTGTGTCG
GATCCAGGATATGGGTCATCATGAAGAATGACAAAGAATTCGCTGGAACG
CTGCTTGGATTCGATGACTACGTTAACATGGTCTTGGAGGACGTGACTGA
GTTCGATTACTCCGGCTCTCAAGTGAAGCTCCCCAAGATTCTGTTGAATG
GAAACAACGTCTGCATGTTGATCCCCGGTGGTGAGGGACCCGTCGGTAGC
TCTTAGATGGCGTCACAACTTCTTCCTCTTGAACTGATCGACAAGTGTGT
CGGATCCAGGATATGGGTCATCATGAAGAATGACAAAGAATTCGCTGGAA
CGCTGCTTGGATTCGATGACTACGTTAACATGGTCTTGGAGGACGTGACT
GAGTTCGATTACTCCGGCTCTCAAGTGAAGCTCCCCAAGATTCTGTTGAA
TGGAAACAACGTCTGCATGTTGATCCCCGGTGGTGAGGGACCCGTCGGTA
GCTCTTAGATGGCGTCACAACTTCTTCCTCTTGAACTGATCGACAAGTGT
GTCGGATCCAGGATATGGGTCATCATGAAGAATGACAAAGAATTCGCTGG
AACGCTGCTTGGATTCGATGACTACGTTAACATGGTCTTGGAGGACGTGA
CTGAGTTCGATTACTCCGGCTCTCAAGTGAAGCTCCCCAAGATTCTGTTG
AATGGAAACAACGTCTGCATGTTGATCCCCGGTGGTGAGGGACCCGTCGG
TAGCTCTTAGATGGCGTCACAACTTCTTCCTCTTGAACTGATCGACAAGT
GTGTCGGATCCAGGATATGGGTCATCATGAAGAATGACAAAGAATTCGCT
GGAACGCTGCTTGGATTCGATGACTACGTTAACATGGTCTTGGAGGACGT
GACTGAGTTCGATTACTCCGGCTCTCAAGTGAAGCTCCCCAAGATTCTGT
TGAATGGAAACAACGTCTGCATGTTGATCCCCGGTGGTGAGGGACCCGTC
GGTAGCTCTTAG
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
LSM5M747DRAFT_292672Aspergillus niger ATCC 13496gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_292672-T1M747DRAFT_292672-T1-proteinAspergillus niger ATCC 13496polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_292672-T1.utr5p1M747DRAFT_292672-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR
M747DRAFT_292672-T1.utr5p2M747DRAFT_292672-T1.utr5p2Aspergillus niger ATCC 13496five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_292672-T1.exon1M747DRAFT_292672-T1.exon1Aspergillus niger ATCC 13496exon
M747DRAFT_292672-T1.exon2M747DRAFT_292672-T1.exon2Aspergillus niger ATCC 13496exon
M747DRAFT_292672-T1.exon3M747DRAFT_292672-T1.exon3Aspergillus niger ATCC 13496exon
M747DRAFT_292672-T1.exon4M747DRAFT_292672-T1.exon4Aspergillus niger ATCC 13496exon
M747DRAFT_292672-T1.exon5M747DRAFT_292672-T1.exon5Aspergillus niger ATCC 13496exon
M747DRAFT_292672-T1.exon6M747DRAFT_292672-T1.exon6Aspergillus niger ATCC 13496exon
M747DRAFT_292672-T1.exon7M747DRAFT_292672-T1.exon7Aspergillus niger ATCC 13496exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_292672-T1.cdsM747DRAFT_292672-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_292672-T1.utr3p1M747DRAFT_292672-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR010920
DBxrefInterPro:IPR033871
DBxrefInterPro:IPR001163
DBxrefPFAM:PF01423
ProductRNA-binding protein lsm5
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851902.1supercontigKZ851902.1:297697..298665 +
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