You are here

Home

M747DRAFT_292885-T1, M747DRAFT_292885-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_292885-T1
Unique NameM747DRAFT_292885-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851903.1:80489..81940-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_292885-T1 ID=M747DRAFT_292885-T1|Name=M747DRAFT_292885-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1452bp|location=Sequence derived from alignment at KZ851903.1:80489..81940- (Aspergillus niger ATCC 13496)
GCGGCCCTTCATCAACTCGTCCACCCCACACCCAGTAGACCAGCGTAAAT
GAATTGCAGATGATGCGAGGCTCTTCTAAGGTATGTATATGCAAAACATC
TATCTAGTCCACTCCAACCCTCCCCCGCAGCATGATGAAATCTTTATATA
TTGGAGCTGTCTTAGCACATTATGCGGACAAACTTTAATTACTTACGCAA
CTATTTACTGAATTCTGCACCCCTTTCACTATACTTCTTTGTCACTGCCA
TTGAGTCTACGATTTTTTTTTGCCGCAGATTCTAATTGTCAGTAGTCATT
ACAGGGCCCTACTAGTGAACAACACACCTTCCAGCCTCCTTGATACCCCA
ACGATCACTTAACCGAATTCATCACACCACCTAACCTACGGTACGGTCAC
ACCAAACGCGGTTATAACAAACACCATGGCCTACGACCCCCGACTGTCCA
GTGCAGGCACTGCGACCGCTCCCTCCCCTCCACCACCACCCCCACCACCC
CCAGAAGCCATGGGATCAACAACTCAACCTCAACCCACCACGACGAACGA
GGACAAAAACACAGTGCCAGAATCGGAGTCCTCATCATCCTCATCATATA
AACTCCGATTCTGCACCGTGTGCGCCTCCAATCAGAACCGCTCTATGGAA
GCCCACCTCCGTCTCTCCACAGCGACGAGTCCCTTCCCTGTAATTTCCTT
CGGGACGGGCTCTCTAGTCCGGTTGCCCGGGCCCTCAATCACCCAACCCA
ACGTCTACAACTTCAACACAACCTCGTACTCTCAAATGTACGACGAGCTG
CTCTCCAAAGACGAGCGTCTCTACCGCAACAACGGCCTCCTGAACATGCT
CGAGCGCAACCGTAACTTGAAATGGGGCCCGGAGCGCTTCCAGGACTGGG
TACCGGGACAGCCGCGCGTCGAGCACGTCTCGAAGGGCGATAAGGGCGCC
CTAGGTACTGAAGGCGGCGTTGTCGATGTAATCATCACCTGTGAAGAACG
GTGCTGGGATGCCGTGGTAGACGATCTTATGAATAAGGGCTCACCCTTGA
ACCGGCCCGTGCATGTCTTCAACGTGGATATCAAGGATAATCACGAAGAG
GCATTAGTAGGAGGCAAGGCTATCTTGGATCTAGCGAATCGGTTAAACGA
GGCTGCCTCGCAGGAGAGAAAGACGAATGGTGCCGATGGATGGGAGAACG
GAGTCGGTGAGGCGAGACGGAATTTCGATGCTCGCGTGCCTGATATCCTG
GCTGAGTGGCAGGAGAGATGGCCTCATTTGCCGGCTTTGTGGACACTGGC
TTGGCTATAGTCCAGCCTAAGCTTAAGCATAAAGCACTACGTATGCATTC
GGCGTCGGCTTTGAATGATTCTAGATCTCTTAGATCTATATCAGATGCAA
ATAATGTTTCATTCTTAAGTAATGGAATACTATCAATTACTTTCAACTAG
TA
back to top

Coding sequence (CDS) from alignment at KZ851903.1:80489..81940-

>M747DRAFT_292885-T1 ID=M747DRAFT_292885-T1|Name=M747DRAFT_292885-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=885bp|location=Sequence derived from alignment at KZ851903.1:80489..81940- (Aspergillus niger ATCC 13496)
ATGGCCTACGACCCCCGACTGTCCAGTGCAGGCACTGCGACCGCTCCCTC
CCCTCCACCACCACCCCCACCACCCCCAGAAGCCATGGGATCAACAACTC
AACCTCAACCCACCACGACGAACGAGGACAAAAACACAGTGCCAGAATCG
GAGTCCTCATCATCCTCATCATATAAACTCCGATTCTGCACCGTGTGCGC
CTCCAATCAGAACCGCTCTATGGAAGCCCACCTCCGTCTCTCCACAGCGA
CGAGTCCCTTCCCTGTAATTTCCTTCGGGACGGGCTCTCTAGTCCGGTTG
CCCGGGCCCTCAATCACCCAACCCAACGTCTACAACTTCAACACAACCTC
GTACTCTCAAATGTACGACGAGCTGCTCTCCAAAGACGAGCGTCTCTACC
GCAACAACGGCCTCCTGAACATGCTCGAGCGCAACCGTAACTTGAAATGG
GGCCCGGAGCGCTTCCAGGACTGGGTACCGGGACAGCCGCGCGTCGAGCA
CGTCTCGAAGGGCGATAAGGGCGCCCTAGGTACTGAAGGCGGCGTTGTCG
ATGTAATCATCACCTGTGAAGAACGGTGCTGGGATGCCGTGGTAGACGAT
CTTATGAATAAGGGCTCACCCTTGAACCGGCCCGTGCATGTCTTCAACGT
GGATATCAAGGATAATCACGAAGAGGCATTAGTAGGAGGCAAGGCTATCT
TGGATCTAGCGAATCGGTTAAACGAGGCTGCCTCGCAGGAGAGAAAGACG
AATGGTGCCGATGGATGGGAGAACGGAGTCGGTGAGGCGAGACGGAATTT
CGATGCTCGCGTGCCTGATATCCTGGCTGAGTGGCAGGAGAGATGGCCTC
ATTTGCCGGCTTTGTGGACACTGGCTTGGCTATAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0004721phosphoprotein phosphatase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SSU72M747DRAFT_292885Aspergillus niger ATCC 13496gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_292885-T1M747DRAFT_292885-T1-proteinAspergillus niger ATCC 13496polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_292885-T1.cdsM747DRAFT_292885-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_292885-T1.utr3p1M747DRAFT_292885-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_292885-T1.exon2M747DRAFT_292885-T1.exon2Aspergillus niger ATCC 13496exon
M747DRAFT_292885-T1.exon1M747DRAFT_292885-T1.exon1Aspergillus niger ATCC 13496exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_292885-T1.utr5p2M747DRAFT_292885-T1.utr5p2Aspergillus niger ATCC 13496five_prime_UTR
M747DRAFT_292885-T1.utr5p1M747DRAFT_292885-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09264JW6
DBxrefInterPro:IPR006811
DBxrefPFAM:PF04722
ProductRNA polymerase II subunit A C-terminal domain phosphatase
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851903.1supercontigKZ851903.1:80489..81940 -
Powered by Drupal