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Sequences
The following sequences are available for this feature:
mRNA from alignment at KZ851903.1:456140..456896+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >M747DRAFT_293001-T1 ID=M747DRAFT_293001-T1|Name=M747DRAFT_293001-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=757bp|location=Sequence derived from alignment at KZ851903.1:456140..456896+ (Aspergillus niger ATCC 13496)
CATCTCAAATCCCACCGGTCACCCCACCGTCTCAACTACAATTCAAGATG
TCTTTCCAGAAGCCTGAGAAGGATTTCGGCGAGGGCCCTGTACGTCTACC
ACCATACCATTATTATTATCATCATCATATATATACATGTCTCAATGCGA
TGGATATGGACATGGTATTTTATATATATTCAATTGCGACAGTACTAACA
AGCAATTCCTGCTATTATAGAAGGTCCACAAGATCCGTATCACCCTCACC
TCTCGCAAGGTCGCCTCCCTTGAGAAGGTGTGCTCGGAGCTGATCGACCG
TGCTCGCTCCAAGTCCCTCCAGGTCAAGGGTCCCGTCCGTCTTCCCACCA
AGACCCTTCACATCTCGACCCGTAAGACCCCCAACGGTGAGGGTTCCAAG
ACCTGGGACAAGTACGAGATGCGCATCCACAAGCGTCTCATCGAGTAAGC
ACCCCCCACCTCCTCCTTTGAAGATGTTGGAAGGGAAAGGATGGAAAGCT
AATATCTGTGTTCAGCCTCCTCGCCCCCACCGAGACTGTCAAGCAGATCA
TCATCAACATCGAGGCTGGTGTTGAGGTTGAGGTCACCATTGCTGCTTAA
ATGTACCCCTACCTTCTCTGATGGTTTGGGTTCGTGACAGGGGTGGCGCG
GACGATGAGGATATGTTTTGTGGTGCTGCTGCGGATGCAGGGTGCGTGCT
AGGCATTCGTCGATACCCGCCAGTTCCTGGCTTGAAAATGAAAAAGTTCA
AAAAGCA back to topCoding sequence (CDS) from alignment at KZ851903.1:456140..456896+ >M747DRAFT_293001-T1 ID=M747DRAFT_293001-T1|Name=M747DRAFT_293001-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=1053bp|location=Sequence derived from alignment at KZ851903.1:456140..456896+ (Aspergillus niger ATCC 13496)
ATGTCTTTCCAGAAGCCTGAGAAGGATTTCGGCGAGGGCCCTAAGGTCCA
CAAGATCCGTATCACCCTCACCTCTCGCAAGGTCGCCTCCCTTGAGAAGG
TGTGCTCGGAGCTGATCGACCGTGCTCGCTCCAAGTCCCTCCAGGTCAAG
GGTCCCGTCCGTCTTCCCACCAAGACCCTTCACATCTCGACCCGTAAGAC
CCCCAACGGTGAGGGTTCCAAGACCTGGGACAAGTACGAGATGCGCATCC
ACAAGCGTCTCATCGACCTCCTCGCCCCCACCGAGACTGTCAAGCAGATC
ATCATCAACATCGAGGCTGGTGTTGAGGTTGAGGTCACCATTGCTGCTTA
AATGTCTTTCCAGAAGCCTGAGAAGGATTTCGGCGAGGGCCCTAAGGTCC
ACAAGATCCGTATCACCCTCACCTCTCGCAAGGTCGCCTCCCTTGAGAAG
GTGTGCTCGGAGCTGATCGACCGTGCTCGCTCCAAGTCCCTCCAGGTCAA
GGGTCCCGTCCGTCTTCCCACCAAGACCCTTCACATCTCGACCCGTAAGA
CCCCCAACGGTGAGGGTTCCAAGACCTGGGACAAGTACGAGATGCGCATC
CACAAGCGTCTCATCGACCTCCTCGCCCCCACCGAGACTGTCAAGCAGAT
CATCATCAACATCGAGGCTGGTGTTGAGGTTGAGGTCACCATTGCTGCTT
AAATGTCTTTCCAGAAGCCTGAGAAGGATTTCGGCGAGGGCCCTAAGGTC
CACAAGATCCGTATCACCCTCACCTCTCGCAAGGTCGCCTCCCTTGAGAA
GGTGTGCTCGGAGCTGATCGACCGTGCTCGCTCCAAGTCCCTCCAGGTCA
AGGGTCCCGTCCGTCTTCCCACCAAGACCCTTCACATCTCGACCCGTAAG
ACCCCCAACGGTGAGGGTTCCAAGACCTGGGACAAGTACGAGATGCGCAT
CCACAAGCGTCTCATCGACCTCCTCGCCCCCACCGAGACTGTCAAGCAGA
TCATCATCAACATCGAGGCTGGTGTTGAGGTTGAGGTCACCATTGCTGCT
TAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0015935 | small ribosomal subunit |
| GO:0005840 | ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
| GO:0003735 | structural constituent of ribosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09265CFP |
| DBxref | InterPro:IPR018268 |
| DBxref | InterPro:IPR005729 |
| DBxref | InterPro:IPR036838 |
| DBxref | InterPro:IPR027486 |
| DBxref | InterPro:IPR001848 |
| DBxref | PFAM:PF00338 |
| Product | 40S ribosomal protein S20 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KZ851903.1 | supercontig | KZ851903.1:456140..456896 + |
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