You are here

Home

M747DRAFT_293669-T1, M747DRAFT_293669-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_293669-T1
Unique NameM747DRAFT_293669-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851905.1:620961..622446-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_293669-T1 ID=M747DRAFT_293669-T1|Name=M747DRAFT_293669-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1486bp|location=Sequence derived from alignment at KZ851905.1:620961..622446- (Aspergillus niger ATCC 13496)
TTATTATTCATTCATTATCGATTGCCTCCGTCCACTCGCTCCATCCCATC
CGTCTCTCTGTCTCATTCTTTCAACCCTGTCTTTCACTGTCTTCGTTTGA
TCTGCATATCTGCAAAAGTTTGATACCTTCTTGTTGTGTGCTTTTCCGTT
CTATCCACTCCATGAGCATGGCGTCCCAGTCCGACTTCTTCTCGGCTATG
ACCAACCGGTCGCTCCGCAACGTCCGATCGGTAGGATGCCCTCCCCTGTC
AGCATCGCTCAGTAAACGGAGTTGCTCGAGCTGATCTTCAATTATGCACC
TTGCTGACATCCTTCGGTCCACTAGGAACTTGAGTTTCTCGCAGACGCAT
CAGTCATTACTCCGCAACAGCTCTCATCCATTCTATCGCAACTACCAAGG
GACGATGAACGCAGCAGAGCCCCCGTGCCTCAGCAGCAGCCACCAGTGCA
ACAACCACCTGTCGTCGCCCAGCAGCCCCCTGCCCCATACTCTCCTCCTA
CGAACCAGTTTGCAAACACCACCTTGAACGAGAAGGCCACTTATCAGCAG
CCTCCTCCGCAGCAGTACTCAACCCCGCCTGTTCCGCCACCTGCTTATCC
CCAAGCTCCACCGGTACTGTCTATCGCTTCAGCGCTCTATGCCTACACTC
CGACGGACCCCGGAGACTTGGCTCTGCAACCACACGATCGTATTCAAGTC
TTGGAACACATGAATGCCGACTGTAAGGCTGTCAATACCCCTTGTGTGCA
GCCTCCCTTGCTAACCGCTGTTTATAGGGTGGCGTGGTCGTAATGAGCGC
ACCAACCTCGAGGGTATCTTCCCTCGGAGCTATGTGAACGTGCTGAACGA
AAAGGCCGTTTCGTCTCCTCCCCCGACCAACTATGGAAACATGCCTCTGG
AAGTCAGCCAGAGTGGTTCGACGCCCCCTGGTGAAGAGGGCAAGAAGTCC
AAGTTCGAGGAGCAGGGCAAGAAGTTTGGCAAGAAGATGGGCAATGCCGG
TACGTTTAAAGCGATGCGCATTCGATCGCCATATAGATTGATGCGCCGAA
CGTCATTAAATATACGGTCAATTTTACTGATAATCACGTCTAGCTATCTT
CGGTGCCGGTGCTACGATGGGTTCGAACATTGTCAACAGCATCTTCTAGG
TGCTCAGGCAGACGAAACATTGTTTTCTTTACAGTTCTCGTTTAAGTGCA
GGCCAGAAAGGCGCCATTTGATGTTTCTTTCGCTTACCCTCATTTGCTCA
TGGGAATGGCGTTGGTGGTTCACTTTTCATTTCATTATTATCGGCAAAAC
CGTTTAGTTCGGGTCAGTTGGGATAGCGCGTCGCAGACTACTTGTGTTAA
TGGTGAAAGCATTCTAGTCTTAGAAGTAATTGGGATGTGTCTTTCCAACT
ACGGACAGAGGTTGTTCATAACGTATCTGTATCTGTCCTCGATTGCGGCT
TTACCGCTCCATAGTCCGCCATGGAAGATATCACAG
back to top

Coding sequence (CDS) from alignment at KZ851905.1:620961..622446-

>M747DRAFT_293669-T1 ID=M747DRAFT_293669-T1|Name=M747DRAFT_293669-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=2952bp|location=Sequence derived from alignment at KZ851905.1:620961..622446- (Aspergillus niger ATCC 13496)
CTATCTTCGGTGCCGGTGCTACGATGGGTTCGAACATTGTCAACAGCATC
TTCTAGGGTGGCGTGGTCGTAATGAGCGCACCAACCTCGAGGGTATCTTC
CCTCGGAGCTATGTGAACGTGCTGAACGAAAAGGCCGTTTCGTCTCCTCC
CCCGACCAACTATGGAAACATGCCTCTGGAAGTCAGCCAGAGTGGTTCGA
CGCCCCCTGGTGAAGAGGGCAAGAAGTCCAAGTTCGAGGAGCAGGGCAAG
AAGTTTGGCAAGAAGATGGGCAATGCCGGAACTTGAGTTTCTCGCAGACG
CATCAGTCATTACTCCGCAACAGCTCTCATCCATTCTATCGCAACTACCA
AGGGACGATGAACGCAGCAGAGCCCCCGTGCCTCAGCAGCAGCCACCAGT
GCAACAACCACCTGTCGTCGCCCAGCAGCCCCCTGCCCCATACTCTCCTC
CTACGAACCAGTTTGCAAACACCACCTTGAACGAGAAGGCCACTTATCAG
CAGCCTCCTCCGCAGCAGTACTCAACCCCGCCTGTTCCGCCACCTGCTTA
TCCCCAAGCTCCACCGGTACTGTCTATCGCTTCAGCGCTCTATGCCTACA
CTCCGACGGACCCCGGAGACTTGGCTCTGCAACCACACGATCGTATTCAA
GTCTTGGAACACATGAATGCCGACTATGGCGTCCCAGTCCGACTTCTTCT
CGGCTATGACCAACCGGTCGCTCCGCAACGTCCGATCGCTATCTTCGGTG
CCGGTGCTACGATGGGTTCGAACATTGTCAACAGCATCTTCTAGGGTGGC
GTGGTCGTAATGAGCGCACCAACCTCGAGGGTATCTTCCCTCGGAGCTAT
GTGAACGTGCTGAACGAAAAGGCCGTTTCGTCTCCTCCCCCGACCAACTA
TGGAAACATGCCTCTGGAAGTCAGCCAGAGTGGTTCGACGCCCCCTGGTG
AAGAGGGCAAGAAGTCCAAGTTCGAGGAGCAGGGCAAGAAGTTTGGCAAG
AAGATGGGCAATGCCGGAACTTGAGTTTCTCGCAGACGCATCAGTCATTA
CTCCGCAACAGCTCTCATCCATTCTATCGCAACTACCAAGGGACGATGAA
CGCAGCAGAGCCCCCGTGCCTCAGCAGCAGCCACCAGTGCAACAACCACC
TGTCGTCGCCCAGCAGCCCCCTGCCCCATACTCTCCTCCTACGAACCAGT
TTGCAAACACCACCTTGAACGAGAAGGCCACTTATCAGCAGCCTCCTCCG
CAGCAGTACTCAACCCCGCCTGTTCCGCCACCTGCTTATCCCCAAGCTCC
ACCGGTACTGTCTATCGCTTCAGCGCTCTATGCCTACACTCCGACGGACC
CCGGAGACTTGGCTCTGCAACCACACGATCGTATTCAAGTCTTGGAACAC
ATGAATGCCGACTATGGCGTCCCAGTCCGACTTCTTCTCGGCTATGACCA
ACCGGTCGCTCCGCAACGTCCGATCGCTATCTTCGGTGCCGGTGCTACGA
TGGGTTCGAACATTGTCAACAGCATCTTCTAGGGTGGCGTGGTCGTAATG
AGCGCACCAACCTCGAGGGTATCTTCCCTCGGAGCTATGTGAACGTGCTG
AACGAAAAGGCCGTTTCGTCTCCTCCCCCGACCAACTATGGAAACATGCC
TCTGGAAGTCAGCCAGAGTGGTTCGACGCCCCCTGGTGAAGAGGGCAAGA
AGTCCAAGTTCGAGGAGCAGGGCAAGAAGTTTGGCAAGAAGATGGGCAAT
GCCGGAACTTGAGTTTCTCGCAGACGCATCAGTCATTACTCCGCAACAGC
TCTCATCCATTCTATCGCAACTACCAAGGGACGATGAACGCAGCAGAGCC
CCCGTGCCTCAGCAGCAGCCACCAGTGCAACAACCACCTGTCGTCGCCCA
GCAGCCCCCTGCCCCATACTCTCCTCCTACGAACCAGTTTGCAAACACCA
CCTTGAACGAGAAGGCCACTTATCAGCAGCCTCCTCCGCAGCAGTACTCA
ACCCCGCCTGTTCCGCCACCTGCTTATCCCCAAGCTCCACCGGTACTGTC
TATCGCTTCAGCGCTCTATGCCTACACTCCGACGGACCCCGGAGACTTGG
CTCTGCAACCACACGATCGTATTCAAGTCTTGGAACACATGAATGCCGAC
TATGGCGTCCCAGTCCGACTTCTTCTCGGCTATGACCAACCGGTCGCTCC
GCAACGTCCGATCGCTATCTTCGGTGCCGGTGCTACGATGGGTTCGAACA
TTGTCAACAGCATCTTCTAGGGTGGCGTGGTCGTAATGAGCGCACCAACC
TCGAGGGTATCTTCCCTCGGAGCTATGTGAACGTGCTGAACGAAAAGGCC
GTTTCGTCTCCTCCCCCGACCAACTATGGAAACATGCCTCTGGAAGTCAG
CCAGAGTGGTTCGACGCCCCCTGGTGAAGAGGGCAAGAAGTCCAAGTTCG
AGGAGCAGGGCAAGAAGTTTGGCAAGAAGATGGGCAATGCCGGAACTTGA
GTTTCTCGCAGACGCATCAGTCATTACTCCGCAACAGCTCTCATCCATTC
TATCGCAACTACCAAGGGACGATGAACGCAGCAGAGCCCCCGTGCCTCAG
CAGCAGCCACCAGTGCAACAACCACCTGTCGTCGCCCAGCAGCCCCCTGC
CCCATACTCTCCTCCTACGAACCAGTTTGCAAACACCACCTTGAACGAGA
AGGCCACTTATCAGCAGCCTCCTCCGCAGCAGTACTCAACCCCGCCTGTT
CCGCCACCTGCTTATCCCCAAGCTCCACCGGTACTGTCTATCGCTTCAGC
GCTCTATGCCTACACTCCGACGGACCCCGGAGACTTGGCTCTGCAACCAC
ACGATCGTATTCAAGTCTTGGAACACATGAATGCCGACTATGGCGTCCCA
GTCCGACTTCTTCTCGGCTATGACCAACCGGTCGCTCCGCAACGTCCGAT
CG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
M747DRAFT_293669M747DRAFT_293669Aspergillus niger ATCC 13496gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_293669-T1M747DRAFT_293669-T1-proteinAspergillus niger ATCC 13496polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_293669-T1.cdsM747DRAFT_293669-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_293669-T1.utr3p1M747DRAFT_293669-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_293669-T1.exon4M747DRAFT_293669-T1.exon4Aspergillus niger ATCC 13496exon
M747DRAFT_293669-T1.exon3M747DRAFT_293669-T1.exon3Aspergillus niger ATCC 13496exon
M747DRAFT_293669-T1.exon2M747DRAFT_293669-T1.exon2Aspergillus niger ATCC 13496exon
M747DRAFT_293669-T1.exon1M747DRAFT_293669-T1.exon1Aspergillus niger ATCC 13496exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_293669-T1.utr5p1M747DRAFT_293669-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036028
DBxrefInterPro:IPR001452
DBxrefPFAM:PF14604
DBxrefPFAM:PF07653
DBxrefPFAM:PF00018
ProductSH3-domain-containing protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851905.1supercontigKZ851905.1:620961..622446 -
Powered by Drupal