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M747DRAFT_295471-T1, M747DRAFT_295471-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_295471-T1
Unique NameM747DRAFT_295471-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851913.1:405328..406788-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_295471-T1 ID=M747DRAFT_295471-T1|Name=M747DRAFT_295471-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1461bp|location=Sequence derived from alignment at KZ851913.1:405328..406788- (Aspergillus niger ATCC 13496)
CCCCAACGACACCTCCCGTCCGTTACCTCTCCCCCCCGACTTTCTCAATC
GCCATATATATCCAACATGGCTGACGCTCCCCGTGGACGTGGAGGATTCG
GCTCTCGCGGTGACCGTGGTGGTGACCGTGGCCGTGGCCGTGGTCGCCGT
GGTCGTCGCGGTGGTGCCAAGGAGCAGGAGAAGGAATGGCAGCCCGTCAC
CAAGCTCGGCCGTCTCGTCAAGGCTGGCAAGATCACCAGCATGGAGCAGA
TCTACCTGCACTCCCTGCCCGTGAAGGAGTACCAGATTGTGGACTTCTTC
CTCCCCAAGCTGAAGGATGAGGTCATGAAGGTACGAACCGATCGCCCGAT
TACCGAATTGTCGACAAGGAAGATCTACGATTGTGCGCGGGAAATAGGAT
TGAATGCGCGGGTGGAATTGATACGTGGATCGGAATTGCAGACATGATGG
GATCAAAAAGGATATATCGAAAAAAAAATGGGAGGTGCTGACGGCTGGAA
AATTTAGATCAAACCCGTCCAGAAGCAGACCCGTGCCGGTCAGCGTACCC
GCTTCAAGGCCGTCGTCGTCATCGGTGACTCCGAGGGTCACATCGGTCTC
GGTATCAAGACCTCCAAGGAAGTCGCTACCGCTATCCGTGCTGCCATCAC
CATCGCCAAGCTCAGCGTTCTCCCCGTCCGTAGAGGTTACTGGGGTACCA
ACCTTGGTGAGCCTCACTCTCTGCCCGTTAAGCAGAGCGCCAAGTGTGGT
TCCGTCTCCGTCAGAGTATGTCGCGACTCTTTTTCGATCCTCGATTTCGC
TTTTCCGTCCGGCCAATATGCTAACCCGGTTATAGCTTATCCCCGCTCCC
CGTGGTACCGGTCTCGTTGCCTCCCCCGCTGTCAAGCGTCTGCTCCAGCT
TGCCGGTGTCCAGGACGCCTACACCTGCTCTTCCGGTTCCACCAAGACCC
TCGAGAACACTCTCAAGGCTACTTTCCTTGCCGTCGTCAACACCTACGGC
TTCCTCACCCCCAACCTCTGGAAGGAGACTAAGCTCATCCGCAGCCCTCT
GGAGGAGTTCGGTGATGTCCTGCGTCAGGGCAAGAAGTACTAGGATAGTG
CTATGATGGGAATAACCTTGCATGATTGTTTTTGAATCGAACTATTTTCC
TACGGGTTTTCAAAAGTCTCTTTTTCGGTTGTAGGATCGGCAGTACCGGC
AAATCCTGACTTTTCGCGCTATGCTACGCTATATACGGTATTCATGGATG
TAATGAACACGGGAACAGTGAACAAGAAGAAACAACGTGATGTCGATTCA
AGCTCTCTTACGGCAAGCCGACAGTACTTGAAACGGATGGCTGACGGGTT
CCTGCATTGCACCGCCTGCACCGTCAGGGTATAGTAGGATGGGCCAGGCC
TTCCATAAGAGATCCATGCGACGTAGTGCTCGATTTGACGAACAGGAGCT
GCTCTCTAGAC
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Coding sequence (CDS) from alignment at KZ851913.1:405328..406788-

>M747DRAFT_295471-T1 ID=M747DRAFT_295471-T1|Name=M747DRAFT_295471-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=2340bp|location=Sequence derived from alignment at KZ851913.1:405328..406788- (Aspergillus niger ATCC 13496)
CTTATCCCCGCTCCCCGTGGTACCGGTCTCGTTGCCTCCCCCGCTGTCAA
GCGTCTGCTCCAGCTTGCCGGTGTCCAGGACGCCTACACCTGCTCTTCCG
GTTCCACCAAGACCCTCGAGAACACTCTCAAGGCTACTTTCCTTGCCGTC
GTCAACACCTACGGCTTCCTCACCCCCAACCTCTGGAAGGAGACTAAGCT
CATCCGCAGCCCTCTGGAGGAGTTCGGTGATGTCCTGCGTCAGGGCAAGA
AGTACTAGATCAAACCCGTCCAGAAGCAGACCCGTGCCGGTCAGCGTACC
CGCTTCAAGGCCGTCGTCGTCATCGGTGACTCCGAGGGTCACATCGGTCT
CGGTATCAAGACCTCCAAGGAAGTCGCTACCGCTATCCGTGCTGCCATCA
CCATCGCCAAGCTCAGCGTTCTCCCCGTCCGTAGAGGTTACTGGGGTACC
AACCTTGGTGAGCCTCACTCTCTGCCCGTTAAGCAGAGCGCCAAGTGTGG
TTCCGTCTCCGTCAGAATGGCTGACGCTCCCCGTGGACGTGGAGGATTCG
GCTCTCGCGGTGACCGTGGTGGTGACCGTGGCCGTGGCCGTGGTCGCCGT
GGTCGTCGCGGTGGTGCCAAGGAGCAGGAGAAGGAATGGCAGCCCGTCAC
CAAGCTCGGCCGTCTCGTCAAGGCTGGCAAGATCACCAGCATGGAGCAGA
TCTACCTGCACTCCCTGCCCGTGAAGGAGTACCAGATTGTGGACTTCTTC
CTCCCCAAGCTGAAGGATGAGGTCATGAAGCTTATCCCCGCTCCCCGTGG
TACCGGTCTCGTTGCCTCCCCCGCTGTCAAGCGTCTGCTCCAGCTTGCCG
GTGTCCAGGACGCCTACACCTGCTCTTCCGGTTCCACCAAGACCCTCGAG
AACACTCTCAAGGCTACTTTCCTTGCCGTCGTCAACACCTACGGCTTCCT
CACCCCCAACCTCTGGAAGGAGACTAAGCTCATCCGCAGCCCTCTGGAGG
AGTTCGGTGATGTCCTGCGTCAGGGCAAGAAGTACTAGATCAAACCCGTC
CAGAAGCAGACCCGTGCCGGTCAGCGTACCCGCTTCAAGGCCGTCGTCGT
CATCGGTGACTCCGAGGGTCACATCGGTCTCGGTATCAAGACCTCCAAGG
AAGTCGCTACCGCTATCCGTGCTGCCATCACCATCGCCAAGCTCAGCGTT
CTCCCCGTCCGTAGAGGTTACTGGGGTACCAACCTTGGTGAGCCTCACTC
TCTGCCCGTTAAGCAGAGCGCCAAGTGTGGTTCCGTCTCCGTCAGAATGG
CTGACGCTCCCCGTGGACGTGGAGGATTCGGCTCTCGCGGTGACCGTGGT
GGTGACCGTGGCCGTGGCCGTGGTCGCCGTGGTCGTCGCGGTGGTGCCAA
GGAGCAGGAGAAGGAATGGCAGCCCGTCACCAAGCTCGGCCGTCTCGTCA
AGGCTGGCAAGATCACCAGCATGGAGCAGATCTACCTGCACTCCCTGCCC
GTGAAGGAGTACCAGATTGTGGACTTCTTCCTCCCCAAGCTGAAGGATGA
GGTCATGAAGCTTATCCCCGCTCCCCGTGGTACCGGTCTCGTTGCCTCCC
CCGCTGTCAAGCGTCTGCTCCAGCTTGCCGGTGTCCAGGACGCCTACACC
TGCTCTTCCGGTTCCACCAAGACCCTCGAGAACACTCTCAAGGCTACTTT
CCTTGCCGTCGTCAACACCTACGGCTTCCTCACCCCCAACCTCTGGAAGG
AGACTAAGCTCATCCGCAGCCCTCTGGAGGAGTTCGGTGATGTCCTGCGT
CAGGGCAAGAAGTACTAGATCAAACCCGTCCAGAAGCAGACCCGTGCCGG
TCAGCGTACCCGCTTCAAGGCCGTCGTCGTCATCGGTGACTCCGAGGGTC
ACATCGGTCTCGGTATCAAGACCTCCAAGGAAGTCGCTACCGCTATCCGT
GCTGCCATCACCATCGCCAAGCTCAGCGTTCTCCCCGTCCGTAGAGGTTA
CTGGGGTACCAACCTTGGTGAGCCTCACTCTCTGCCCGTTAAGCAGAGCG
CCAAGTGTGGTTCCGTCTCCGTCAGAATGGCTGACGCTCCCCGTGGACGT
GGAGGATTCGGCTCTCGCGGTGACCGTGGTGGTGACCGTGGCCGTGGCCG
TGGTCGCCGTGGTCGTCGCGGTGGTGCCAAGGAGCAGGAGAAGGAATGGC
AGCCCGTCACCAAGCTCGGCCGTCTCGTCAAGGCTGGCAAGATCACCAGC
ATGGAGCAGATCTACCTGCACTCCCTGCCCGTGAAGGAGTACCAGATTGT
GGACTTCTTCCTCCCCAAGCTGAAGGATGAGGTCATGAAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS2M747DRAFT_295471Aspergillus niger ATCC 13496gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_295471-T1M747DRAFT_295471-T1-proteinAspergillus niger ATCC 13496polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_295471-T1.cdsM747DRAFT_295471-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_295471-T1.utr3p1M747DRAFT_295471-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_295471-T1.exon3M747DRAFT_295471-T1.exon3Aspergillus niger ATCC 13496exon
M747DRAFT_295471-T1.exon2M747DRAFT_295471-T1.exon2Aspergillus niger ATCC 13496exon
M747DRAFT_295471-T1.exon1M747DRAFT_295471-T1.exon1Aspergillus niger ATCC 13496exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_295471-T1.utr5p1M747DRAFT_295471-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09264903
DBxrefInterPro:IPR020568
DBxrefInterPro:IPR018192
DBxrefInterPro:IPR005711
DBxrefInterPro:IPR005324
DBxrefInterPro:IPR013810
DBxrefInterPro:IPR014721
DBxrefPFAM:PF03719
DBxrefPFAM:PF00333
Product40S ribosomal protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851913.1supercontigKZ851913.1:405328..406788 -
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