You are here

Home

M747DRAFT_297817-T1, M747DRAFT_297817-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_297817-T1
Unique NameM747DRAFT_297817-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851929.1:74790..77112+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_297817-T1 ID=M747DRAFT_297817-T1|Name=M747DRAFT_297817-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=2323bp|location=Sequence derived from alignment at KZ851929.1:74790..77112+ (Aspergillus niger ATCC 13496)
AGCTCGCGATCGCTAGGACTCGGACGCTCGTGTCCACTTAAATTACTTAG
TCGCATGGACTGATAGTCCGTATATTTAACGAAATGGATGCGTTTAAGTT
ATTGACAAGGTCCACCAAGTTCAAGGCTGGTAATTCCCTGTCTTCGACAC
TGCCTTCCAAAGGCAAGGCCGAGAACCCCCAGCTTTTCCGTGACGCAGAG
GCCGAAAAGCTTCTGGAGTCAAATGCTTTTGGGAAAAAGAGAAAGCGCAC
GCAAGCTGCAGGTGATTCAGATGCAGAAGATGGCAATGCTGGCGATCTAG
ATTTCTTCGGTTCAGGTAAACGGTCTGCGGCCAGTGCCCCATCGAAAAAG
GATGAAGATGGACCTTCCGAGCAGAAAGATGCATCTGACTCCGAAGGCGA
TGATTCGATGGATGAAGTTGAGCGCCGGACGATCTTGAACTCTCACAAGA
TCAAGGTCACTGATATGCGTGATTTTGAAGAACTTCAGCCCACTCAGCCT
CAGAAGGAGGAATCTAAGAAGAAAAAGAAGAAGAGAAAGCAGCAGGAAGA
GGAGCCCGCTCAGACGCTCACTAAGAAGGAGCAGAAGAAAGCCCGGCGGT
TGTTTCCGGAGCCCTTGGTCTCCTTTAAACAGCTGCGTACGAAGTACAAT
ATTTCCCGACGTCTAGCGGAAAACATTGCTGAGCAAGGCTTTACGGTCCC
TACTGAAGTTCAACTAGGAAGTCTTCCTCTTTTGCTCGGAGACCAATCAG
TGCCGCAGAAGTCGGGCACTGAAAAGAGCACCGAACCGGATCTACTGGTC
GTTGCGCCTACAGGAAGTGGCAAGACGCTATCATTTATGATCCCGGTGAT
CAACAAGATTGTCCGGCACCATCACGAAAAGCCAGAGGAACGGGGCATCT
TGTCTGTTGTAATTGCTCCGACGAAAGAGCTTGCTAGCCAAATCGTCAAC
GAAGGCCGAAAGTTAGCTTTGGGAACTGGTGTGAAGATCACTTTGATGAA
GAAGGGCATGCGTGTGGTAGAGCGTGATGATGAAGACGATAGCAAAGACG
TCCTGGATGAAGATGATTCGGAATCGTTGGGCTCTGAAGATGATGAAAAG
GCCACAGCAAAGAACAGCAAAGGGAAGGCGCCGGTTACCAAGAGCGACAT
CCTTGTAACAACACCATTGCTTCTTGTTAACGCGCTTTCTGCAAACCGGA
CAAAACCGTTGGCGACTCTCCCTCTTGTGAGAAATGTGGTTCTGGATGAG
GCGGATGTTCTCCTGGATCCTCTGTTCCGCGACCAAACACTTGACATCTG
GCGCTCCTGCACGCATCCTGAGCTTCGAGCAAGTCTCTGGTCAGCGACGA
TGGGGTCAAATGTCGAAGACCTCGCTAAGTCAACGATCAAGGAGCGGAAA
GATACTCTAAGCGAGACCAAGTCTTATCCGCTACTCCGTTTGGTGGTTGG
CCTCAAGGACTCTGCTATTCCAAACATCAAGCACAAGCTGGTTTATGCTG
CCACTGAGCAAGGAAAGTTGCTCGGTCTTCGGCAGCTTTTGCACCCCGCC
GCAGCATCATCAACGGACATTCGTTTACGCCCACCTTTCTTGATCTTTAC
TCAGACGATTCCCAGAGCGGTTGCGTTACATTCAGAACTGCGCTACGATA
TCCCTCCCGAGGCGGGTGGCTCGTCACGTATAGCTGTCCTCCACTCTGAG
TTATCGGACGGCCAACGTTCCGAGATCATGAAGCAATTCCGGAAGGGTGA
AATTTGGATTCTGGTCACCACGGATCTTTTGGCCCGTGGCGTTGACTTCA
GAGGCATTAACGGGGTTGTTAACTACGATATCCCGAACTCCGCTGCTGTC
TACGTCCACCGTGTTGGACGGACGGGCAGAGCTGGCCGTGAAGGTGGCAT
TGCAGTCACATACTACACCAAGGAGGATATCCCTTATGTCAAGAGCATTG
CCAATGTAATTGACGTCAGCGAGAAGTTACGGGGGACAGATGAGGAGAAG
TCTGTACAGAAGTGGCTGTTGGACGCTCTTCCGGACCTCAGCAAGAAGAA
GAAGGAGGAGCTCAAGAAGCACGGCGTCAAGGCCAGGCAGACCCAAGGCA
CCAAAGACGACAAGAAGACAAGAATTAGCACCAAGAGTGGTTACGAGCGA
CGCCAGGAGAACAAGAAGAAGGCTCTCATCTCAGCCAGCCGCAATAGGAA
ATCTCAACCAAAGTCAGGCGCAGACTCTGGCAGTGACGACGACAATCAGG
GCTGGCAAGGACTCGAGGACTAGGTTCCTATGGATGCGTTGGTGTTTCTG
TACGAATATGAAAAGTCTACCTT
back to top

Coding sequence (CDS) from alignment at KZ851929.1:74790..77112+

>M747DRAFT_297817-T1 ID=M747DRAFT_297817-T1|Name=M747DRAFT_297817-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=2190bp|location=Sequence derived from alignment at KZ851929.1:74790..77112+ (Aspergillus niger ATCC 13496)
ATGGATGCGTTTAAGTTATTGACAAGGTCCACCAAGTTCAAGGCTGGTAA
TTCCCTGTCTTCGACACTGCCTTCCAAAGGCAAGGCCGAGAACCCCCAGC
TTTTCCGTGACGCAGAGGCCGAAAAGCTTCTGGAGTCAAATGCTTTTGGG
AAAAAGAGAAAGCGCACGCAAGCTGCAGGTGATTCAGATGCAGAAGATGG
CAATGCTGGCGATCTAGATTTCTTCGGTTCAGGTAAACGGTCTGCGGCCA
GTGCCCCATCGAAAAAGGATGAAGATGGACCTTCCGAGCAGAAAGATGCA
TCTGACTCCGAAGGCGATGATTCGATGGATGAAGTTGAGCGCCGGACGAT
CTTGAACTCTCACAAGATCAAGGTCACTGATATGCGTGATTTTGAAGAAC
TTCAGCCCACTCAGCCTCAGAAGGAGGAATCTAAGAAGAAAAAGAAGAAG
AGAAAGCAGCAGGAAGAGGAGCCCGCTCAGACGCTCACTAAGAAGGAGCA
GAAGAAAGCCCGGCGGTTGTTTCCGGAGCCCTTGGTCTCCTTTAAACAGC
TGCGTACGAAGTACAATATTTCCCGACGTCTAGCGGAAAACATTGCTGAG
CAAGGCTTTACGGTCCCTACTGAAGTTCAACTAGGAAGTCTTCCTCTTTT
GCTCGGAGACCAATCAGTGCCGCAGAAGTCGGGCACTGAAAAGAGCACCG
AACCGGATCTACTGGTCGTTGCGCCTACAGGAAGTGGCAAGACGCTATCA
TTTATGATCCCGGTGATCAACAAGATTGTCCGGCACCATCACGAAAAGCC
AGAGGAACGGGGCATCTTGTCTGTTGTAATTGCTCCGACGAAAGAGCTTG
CTAGCCAAATCGTCAACGAAGGCCGAAAGTTAGCTTTGGGAACTGGTGTG
AAGATCACTTTGATGAAGAAGGGCATGCGTGTGGTAGAGCGTGATGATGA
AGACGATAGCAAAGACGTCCTGGATGAAGATGATTCGGAATCGTTGGGCT
CTGAAGATGATGAAAAGGCCACAGCAAAGAACAGCAAAGGGAAGGCGCCG
GTTACCAAGAGCGACATCCTTGTAACAACACCATTGCTTCTTGTTAACGC
GCTTTCTGCAAACCGGACAAAACCGTTGGCGACTCTCCCTCTTGTGAGAA
ATGTGGTTCTGGATGAGGCGGATGTTCTCCTGGATCCTCTGTTCCGCGAC
CAAACACTTGACATCTGGCGCTCCTGCACGCATCCTGAGCTTCGAGCAAG
TCTCTGGTCAGCGACGATGGGGTCAAATGTCGAAGACCTCGCTAAGTCAA
CGATCAAGGAGCGGAAAGATACTCTAAGCGAGACCAAGTCTTATCCGCTA
CTCCGTTTGGTGGTTGGCCTCAAGGACTCTGCTATTCCAAACATCAAGCA
CAAGCTGGTTTATGCTGCCACTGAGCAAGGAAAGTTGCTCGGTCTTCGGC
AGCTTTTGCACCCCGCCGCAGCATCATCAACGGACATTCGTTTACGCCCA
CCTTTCTTGATCTTTACTCAGACGATTCCCAGAGCGGTTGCGTTACATTC
AGAACTGCGCTACGATATCCCTCCCGAGGCGGGTGGCTCGTCACGTATAG
CTGTCCTCCACTCTGAGTTATCGGACGGCCAACGTTCCGAGATCATGAAG
CAATTCCGGAAGGGTGAAATTTGGATTCTGGTCACCACGGATCTTTTGGC
CCGTGGCGTTGACTTCAGAGGCATTAACGGGGTTGTTAACTACGATATCC
CGAACTCCGCTGCTGTCTACGTCCACCGTGTTGGACGGACGGGCAGAGCT
GGCCGTGAAGGTGGCATTGCAGTCACATACTACACCAAGGAGGATATCCC
TTATGTCAAGAGCATTGCCAATGTAATTGACGTCAGCGAGAAGTTACGGG
GGACAGATGAGGAGAAGTCTGTACAGAAGTGGCTGTTGGACGCTCTTCCG
GACCTCAGCAAGAAGAAGAAGGAGGAGCTCAAGAAGCACGGCGTCAAGGC
CAGGCAGACCCAAGGCACCAAAGACGACAAGAAGACAAGAATTAGCACCA
AGAGTGGTTACGAGCGACGCCAGGAGAACAAGAAGAAGGCTCTCATCTCA
GCCAGCCGCAATAGGAAATCTCAACCAAAGTCAGGCGCAGACTCTGGCAG
TGACGACGACAATCAGGGCTGGCAAGGACTCGAGGACTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ROK1M747DRAFT_297817Aspergillus niger ATCC 13496gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_297817-T1.utr5p1M747DRAFT_297817-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_297817-T1.exon1M747DRAFT_297817-T1.exon1Aspergillus niger ATCC 13496exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_297817-T1.cdsM747DRAFT_297817-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_297817-T1.utr3p1M747DRAFT_297817-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_297817-T1M747DRAFT_297817-T1-proteinAspergillus niger ATCC 13496polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR014014
DBxrefInterPro:IPR011545
DBxrefInterPro:IPR014001
DBxrefInterPro:IPR001650
DBxrefPFAM:PF00271
DBxrefPFAM:PF00270
ProductRNA-dependent ATPase rok1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851929.1supercontigKZ851929.1:74790..77112 +
Powered by Drupal