You are here

Home

M747DRAFT_298304-T1, M747DRAFT_298304-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_298304-T1
Unique NameM747DRAFT_298304-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851934.1:43356..44573-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_298304-T1 ID=M747DRAFT_298304-T1|Name=M747DRAFT_298304-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1218bp|location=Sequence derived from alignment at KZ851934.1:43356..44573- (Aspergillus niger ATCC 13496)
TTTTTTCTCTTCCTTTTCCTCTAATCTCCTCCTCAATTCCAACATCCTCC
TCACCTCTCCCTTTCACTTTTTACCTCATACCCCCTAATATCCATCACCA
TGGCTGACGAGGTAGGTGTTAACTCTCCTTCTGCGAACTTCCCGGTCTAC
TCAGTTGCGGCCTATCTTTGTCCTGCTTGCTCGGTTGGGTTGGGTGTCTT
CGGGGCCTCGCATCTCGATCGCTGCCCCCCACCCAACCCCCCTCGTTCCT
GCAGACATTGCATATTTTGCTACACTCGCCGACCATCTGCTATAATTTCA
ATCATGGGCTAGTTCGCTAATGTTCACCTTTAACAGCACCACGAGACCTT
CGAGTCCGCCGACGCCGGCGCCTCGGCCACCTTCCCCATGCAGTGCTCTG
CCCTGCGCAAGAACGGTCACGTTGTTATCAAGGGCCGCCCCTGCAAGATC
GTTGAGATGTCCACCTCCAAGACTGGCAAGCACGGTCACGCCAAGGTCCA
CATCGTTGCCATCGATATCTTCACTGGCAAGAAGCTTGAGGATCTGTCCC
CCTCCACCCACAACATGGACGTCCCCAACGTCTACCGCAAGGAATACCAG
CTCGTGAGTAGTTTGGAACATGAACGGTCTTGGTGATCTTGACTCGCTAA
CACAGCTATAGCTTGACGTTACTGACGACGACTTCCTTTCCCTGATGGAC
GAGAACGGTAACACCAAGGACGACGTCAAGGTCCCCGAAGGTGAGGTGGG
CGACCGTATCCGCCGCATGTTCCACGATGAGGAGAAGGACTGCAGTGAGT
AACACCCGTCCGTTTTGGCTAGGTGGCTGTTGGCAAGATTACTGACGAAT
TTTCCTTTTCAGACGTCACCATCCTGTCCTCCATGGGCGAGCAGGTCTGC
ATGGATGTCAAGGAGGCTCCCAAGGGCAACTAAATTATTGTGTCTATGGA
CCCTTAACTGCTCTGTCATCCATGGTGTATTTGAAGAGCCTCGCTCGGCT
TTGCCCTTGGTCAGGTGGATGATACGGCCTTTTGGGCAGCTACGGCGCCA
CGTACTCTTATATCCGTCTGTTTAGCCTTGGGTATACGCTGAGCCGGCCA
TGATGGTCACGTTAATTTGGCGGCATAAATCCTGCCTTGTCAGAGAAACA
GTTCTTGAGTTCAGCACTTTCACGATAGTTTGACGAATAAAAAATAACTA
CCTTTTCTCCCGACCCAA
back to top

Coding sequence (CDS) from alignment at KZ851934.1:43356..44573-

>M747DRAFT_298304-T1 ID=M747DRAFT_298304-T1|Name=M747DRAFT_298304-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=1932bp|location=Sequence derived from alignment at KZ851934.1:43356..44573- (Aspergillus niger ATCC 13496)
ACGTCACCATCCTGTCCTCCATGGGCGAGCAGGTCTGCATGGATGTCAAG
GAGGCTCCCAAGGGCAACTAACTTGACGTTACTGACGACGACTTCCTTTC
CCTGATGGACGAGAACGGTAACACCAAGGACGACGTCAAGGTCCCCGAAG
GTGAGGTGGGCGACCGTATCCGCCGCATGTTCCACGATGAGGAGAAGGAC
TGCACACCACGAGACCTTCGAGTCCGCCGACGCCGGCGCCTCGGCCACCT
TCCCCATGCAGTGCTCTGCCCTGCGCAAGAACGGTCACGTTGTTATCAAG
GGCCGCCCCTGCAAGATCGTTGAGATGTCCACCTCCAAGACTGGCAAGCA
CGGTCACGCCAAGGTCCACATCGTTGCCATCGATATCTTCACTGGCAAGA
AGCTTGAGGATCTGTCCCCCTCCACCCACAACATGGACGTCCCCAACGTC
TACCGCAAGGAATACCAGCTCATGGCTGACGAGACGTCACCATCCTGTCC
TCCATGGGCGAGCAGGTCTGCATGGATGTCAAGGAGGCTCCCAAGGGCAA
CTAACTTGACGTTACTGACGACGACTTCCTTTCCCTGATGGACGAGAACG
GTAACACCAAGGACGACGTCAAGGTCCCCGAAGGTGAGGTGGGCGACCGT
ATCCGCCGCATGTTCCACGATGAGGAGAAGGACTGCACACCACGAGACCT
TCGAGTCCGCCGACGCCGGCGCCTCGGCCACCTTCCCCATGCAGTGCTCT
GCCCTGCGCAAGAACGGTCACGTTGTTATCAAGGGCCGCCCCTGCAAGAT
CGTTGAGATGTCCACCTCCAAGACTGGCAAGCACGGTCACGCCAAGGTCC
ACATCGTTGCCATCGATATCTTCACTGGCAAGAAGCTTGAGGATCTGTCC
CCCTCCACCCACAACATGGACGTCCCCAACGTCTACCGCAAGGAATACCA
GCTCATGGCTGACGAGACGTCACCATCCTGTCCTCCATGGGCGAGCAGGT
CTGCATGGATGTCAAGGAGGCTCCCAAGGGCAACTAACTTGACGTTACTG
ACGACGACTTCCTTTCCCTGATGGACGAGAACGGTAACACCAAGGACGAC
GTCAAGGTCCCCGAAGGTGAGGTGGGCGACCGTATCCGCCGCATGTTCCA
CGATGAGGAGAAGGACTGCACACCACGAGACCTTCGAGTCCGCCGACGCC
GGCGCCTCGGCCACCTTCCCCATGCAGTGCTCTGCCCTGCGCAAGAACGG
TCACGTTGTTATCAAGGGCCGCCCCTGCAAGATCGTTGAGATGTCCACCT
CCAAGACTGGCAAGCACGGTCACGCCAAGGTCCACATCGTTGCCATCGAT
ATCTTCACTGGCAAGAAGCTTGAGGATCTGTCCCCCTCCACCCACAACAT
GGACGTCCCCAACGTCTACCGCAAGGAATACCAGCTCATGGCTGACGAGA
CGTCACCATCCTGTCCTCCATGGGCGAGCAGGTCTGCATGGATGTCAAGG
AGGCTCCCAAGGGCAACTAACTTGACGTTACTGACGACGACTTCCTTTCC
CTGATGGACGAGAACGGTAACACCAAGGACGACGTCAAGGTCCCCGAAGG
TGAGGTGGGCGACCGTATCCGCCGCATGTTCCACGATGAGGAGAAGGACT
GCACACCACGAGACCTTCGAGTCCGCCGACGCCGGCGCCTCGGCCACCTT
CCCCATGCAGTGCTCTGCCCTGCGCAAGAACGGTCACGTTGTTATCAAGG
GCCGCCCCTGCAAGATCGTTGAGATGTCCACCTCCAAGACTGGCAAGCAC
GGTCACGCCAAGGTCCACATCGTTGCCATCGATATCTTCACTGGCAAGAA
GCTTGAGGATCTGTCCCCCTCCACCCACAACATGGACGTCCCCAACGTCT
ACCGCAAGGAATACCAGCTCATGGCTGACGAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003746translation elongation factor activity
GO:0043022ribosome binding
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006452translational frameshifting
GO:0045905positive regulation of translational termination
GO:0045901positive regulation of translational elongation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ANB1M747DRAFT_298304Aspergillus niger ATCC 13496gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_298304-T1M747DRAFT_298304-T1-proteinAspergillus niger ATCC 13496polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_298304-T1.cdsM747DRAFT_298304-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_298304-T1.utr3p1M747DRAFT_298304-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_298304-T1.exon4M747DRAFT_298304-T1.exon4Aspergillus niger ATCC 13496exon
M747DRAFT_298304-T1.exon3M747DRAFT_298304-T1.exon3Aspergillus niger ATCC 13496exon
M747DRAFT_298304-T1.exon2M747DRAFT_298304-T1.exon2Aspergillus niger ATCC 13496exon
M747DRAFT_298304-T1.exon1M747DRAFT_298304-T1.exon1Aspergillus niger ATCC 13496exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_298304-T1.utr5p1M747DRAFT_298304-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR012340
DBxrefInterPro:IPR008991
DBxrefInterPro:IPR019769
DBxrefInterPro:IPR001884
DBxrefInterPro:IPR014722
DBxrefInterPro:IPR020189
DBxrefPFAM:PF01287
Producttranslation initiation factor eIF5A
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851934.1supercontigKZ851934.1:43356..44573 -
Powered by Drupal