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M747DRAFT_298540-T1, M747DRAFT_298540-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_298540-T1
Unique NameM747DRAFT_298540-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851936.1:179538..180830-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_298540-T1 ID=M747DRAFT_298540-T1|Name=M747DRAFT_298540-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1293bp|location=Sequence derived from alignment at KZ851936.1:179538..180830- (Aspergillus niger ATCC 13496)
TTCCGTTTGTTTAGATCGTCGTCCACATCCCCCTGTCGCCATCCCTCGCA
GCCCGCTGTCGCATATTCCTCACGCAATCACCACAATCAACACAACAAAC
AGTCATGGTACGTGGCCGTCTCGCAATGTCAATTAAAAGCATCATTATCC
CTCGCTGGCGGGAGAAGAATTGTCCGGATGGCATCAGGAACGAGCAGCAC
TCTGTATCCCTTGTTTGTTGACTGTCGTGGTCAACCTCGGGGATAACTGG
TGTGGTTGGATCCATTGAATTCCGGCCCCTCGTCGGCCCATCCAATCCCT
TTGCTCGTTTCCATGGTTCACTAGTAGTCGTGGCTGCTTGTTCGTCATCG
GCACACTTCATCTCCCTGTCCTCTTTCCATCCTCCATTTCATCTCTGATC
TCTACTCTTCATCCCGGATTTTTGCACGTGTGATTTCACTCTCAAGATGT
CTCGCTCACCAGATATGCACCATGACCAGGCTTCGACCAACTACAAGGAA
GCCTTCTCTCTCTTCGATAAGCGTGGTACCGGCAAGGTCGCGCTCGAGTC
GCTAGGCGACCTCCTGCGCGCATGCGGTCAGAATCCTACTTTGGCGGAGA
TCGCAGATTTGGAGAAGTCCATCGGTGGAGACTGTACGTTTTGACTTGCT
CTGAAATGGCTAATGTGTATCTAACACACTTGTGCGCAGTTGACTTCGAG
TCGTTCTTGAAGGTCCTCAACCGCCCTGGAGGCTTCCGTGACCCTGGCGA
GCCCGAAGAATACTGCCGCGGATTCCAGGTGTTCGACAAGGACCTGACTG
GGTTTATCGGTGTGGGACAGCTCCGATACAGTATGTGAAGCAGGATGGAG
TTTATTGGGTTGATACTGATGATGGCTACAGTCCTGACGAATCTCGGTGA
GAAGATGTCGGATGAGGAGGTTGACGAGCTACTCAAGGCCGTCGACACCA
GCTCCGGCGAGATCAACTACACCGGTATGTTACACCAACTGAAAGTTCAC
CATGCCTTTGTGTTGGGTCAGGCTAACAGCAGCAGACCTCGTCCGCACCA
TCCTGGCCAACTAAACGACACACGATACCGATACCCTCCTGACGTTCCTG
ATGATTTCTGTTACGACGCGAACCTCCTACCAGCCGTGCCGGAGTTGAAG
GCTTGAGCATAGTTTAGTTATAGTGCATTGTATATGGGATATTGCGCGAT
TCAGCAGCGGATAAACATAAGATAAATAAACATGATAAAATGATACATGG
TATATGGAAGTAAAGTATAAATAGCACAATCAACTCCTCATAA
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Coding sequence (CDS) from alignment at KZ851936.1:179538..180830-

>M747DRAFT_298540-T1 ID=M747DRAFT_298540-T1|Name=M747DRAFT_298540-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=1800bp|location=Sequence derived from alignment at KZ851936.1:179538..180830- (Aspergillus niger ATCC 13496)
ACCTCGTCCGCACCATCCTGGCCAACTAATCCTGACGAATCTCGGTGAGA
AGATGTCGGATGAGGAGGTTGACGAGCTACTCAAGGCCGTCGACACCAGC
TCCGGCGAGATCAACTACACCGTTGACTTCGAGTCGTTCTTGAAGGTCCT
CAACCGCCCTGGAGGCTTCCGTGACCCTGGCGAGCCCGAAGAATACTGCC
GCGGATTCCAGGTGTTCGACAAGGACCTGACTGGGTTTATCGGTGTGGGA
CAGCTCCGATACAATGTCTCGCTCACCAGATATGCACCATGACCAGGCTT
CGACCAACTACAAGGAAGCCTTCTCTCTCTTCGATAAGCGTGGTACCGGC
AAGGTCGCGCTCGAGTCGCTAGGCGACCTCCTGCGCGCATGCGGTCAGAA
TCCTACTTTGGCGGAGATCGCAGATTTGGAGAAGTCCATCGGTGGAGACT
ACCTCGTCCGCACCATCCTGGCCAACTAATCCTGACGAATCTCGGTGAGA
AGATGTCGGATGAGGAGGTTGACGAGCTACTCAAGGCCGTCGACACCAGC
TCCGGCGAGATCAACTACACCGTTGACTTCGAGTCGTTCTTGAAGGTCCT
CAACCGCCCTGGAGGCTTCCGTGACCCTGGCGAGCCCGAAGAATACTGCC
GCGGATTCCAGGTGTTCGACAAGGACCTGACTGGGTTTATCGGTGTGGGA
CAGCTCCGATACAATGTCTCGCTCACCAGATATGCACCATGACCAGGCTT
CGACCAACTACAAGGAAGCCTTCTCTCTCTTCGATAAGCGTGGTACCGGC
AAGGTCGCGCTCGAGTCGCTAGGCGACCTCCTGCGCGCATGCGGTCAGAA
TCCTACTTTGGCGGAGATCGCAGATTTGGAGAAGTCCATCGGTGGAGACT
ACCTCGTCCGCACCATCCTGGCCAACTAATCCTGACGAATCTCGGTGAGA
AGATGTCGGATGAGGAGGTTGACGAGCTACTCAAGGCCGTCGACACCAGC
TCCGGCGAGATCAACTACACCGTTGACTTCGAGTCGTTCTTGAAGGTCCT
CAACCGCCCTGGAGGCTTCCGTGACCCTGGCGAGCCCGAAGAATACTGCC
GCGGATTCCAGGTGTTCGACAAGGACCTGACTGGGTTTATCGGTGTGGGA
CAGCTCCGATACAATGTCTCGCTCACCAGATATGCACCATGACCAGGCTT
CGACCAACTACAAGGAAGCCTTCTCTCTCTTCGATAAGCGTGGTACCGGC
AAGGTCGCGCTCGAGTCGCTAGGCGACCTCCTGCGCGCATGCGGTCAGAA
TCCTACTTTGGCGGAGATCGCAGATTTGGAGAAGTCCATCGGTGGAGACT
ACCTCGTCCGCACCATCCTGGCCAACTAATCCTGACGAATCTCGGTGAGA
AGATGTCGGATGAGGAGGTTGACGAGCTACTCAAGGCCGTCGACACCAGC
TCCGGCGAGATCAACTACACCGTTGACTTCGAGTCGTTCTTGAAGGTCCT
CAACCGCCCTGGAGGCTTCCGTGACCCTGGCGAGCCCGAAGAATACTGCC
GCGGATTCCAGGTGTTCGACAAGGACCTGACTGGGTTTATCGGTGTGGGA
CAGCTCCGATACAATGTCTCGCTCACCAGATATGCACCATGACCAGGCTT
CGACCAACTACAAGGAAGCCTTCTCTCTCTTCGATAAGCGTGGTACCGGC
AAGGTCGCGCTCGAGTCGCTAGGCGACCTCCTGCGCGCATGCGGTCAGAA
TCCTACTTTGGCGGAGATCGCAGATTTGGAGAAGTCCATCGGTGGAGACT
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CDC4M747DRAFT_298540Aspergillus niger ATCC 13496gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_298540-T1M747DRAFT_298540-T1-proteinAspergillus niger ATCC 13496polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_298540-T1.cdsM747DRAFT_298540-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_298540-T1.utr3p1M747DRAFT_298540-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_298540-T1.exon4M747DRAFT_298540-T1.exon4Aspergillus niger ATCC 13496exon
M747DRAFT_298540-T1.exon3M747DRAFT_298540-T1.exon3Aspergillus niger ATCC 13496exon
M747DRAFT_298540-T1.exon2M747DRAFT_298540-T1.exon2Aspergillus niger ATCC 13496exon
M747DRAFT_298540-T1.exon1M747DRAFT_298540-T1.exon1Aspergillus niger ATCC 13496exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_298540-T1.utr5p1M747DRAFT_298540-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR


Properties
Property NameValue
NoteEggNog:ENOG41
NoteBUSCO:EOG09265591
DBxrefInterPro:IPR011992
DBxrefInterPro:IPR002048
DBxrefPFAM:PF13833
DBxrefPFAM:PF13499
ProductSCF ubiquitin ligase complex subunit cdc4
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851936.1supercontigKZ851936.1:179538..180830 -
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