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Sequences
The following sequences are available for this feature:
mRNA from alignment at KZ851967.1:17474..19540+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >M747DRAFT_300108-T1 ID=M747DRAFT_300108-T1|Name=M747DRAFT_300108-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=2067bp|location=Sequence derived from alignment at KZ851967.1:17474..19540+ (Aspergillus niger ATCC 13496)
GCAACCCAGCAGCGTGGGAGACACACAACGTGCTCATAGGGATGCGAAGG
TTCCAAGGAAACCTTTGTTCTTTCTTGAGTCGTACATCTGCACAGCGCAC
ACCCTCAACAAGACGAACCTTCCAGTCCCTGTCCCGCTCGCACGCCCAAG
TTGATTCCCAACCTACAAGTACCATGTCCGGGAACACAGCGGAGGGCCAA
CAAGTCCCTACCCACGAAACCGACTATTCAACATGGACTACGTCGAGACT
TGTTGCCCGAATCACTGAACTAGAACGCCAGTTACATTCCCGCACAGCAG
AGTACGCTGCATCCCCTGCGAAGCAGCCCGAGGACGCGGCCAAAGACGCT
GCCAAGAGTGCACCGAGTGATGGGAAAGTGAACCAGAAGGAGCCTTCATC
TCCTGCGGTGGGAGCGGAGAAGAAGAAGCAGGTGAAGCCGCCAAAGCCGC
CGAAACCGCGCCGGGAAATTGATCCGTCGAGATACAATACACGGTTCATC
GCGTTGAAGTTCGCCTACCTTGGACAGCGGTACAATGGGCTTGAGCATGC
AAACGGGAATGCCACGCCGCTACCTACGATCGAGGAGGAGATGTACAAGG
CTCTACGGAAGACGCGGTTGATTTTCCCGACGGATACAACCGGTGATGAA
TTCGTGGAGAGCTATGCGCCGAGAGAGACGAAGCCGTATTATATCAATTG
GGATGGATGTGAATATTCCAAGGCTGGGCGTACGGACCGAGGAGTCAGTG
CCTTCGGGCAAGTGATTGGCATTAGAGTGCGGAGTGCACGGCCGAAGCGC
GACGAGGTTGTGCAGTCGGACGAAAACGCCGATACCACCATGCAGAATAC
GGACGAGGCTAATGCTTCGGTCGACGATGGCTGGGACGACATCAAAGATG
AGCTACCCTACGTGAGCATGTTGAACAAGGTGCTTCCTGAGGATATTCGT
GTATTGGCATGGTGCCCGCGTCCTCCTGAGGGGTTCGATGCCCGCTTTTC
TTGCGGGGAACGCCATTACAAGTATTTCTTCACGCAGCCAGCCTTTTCTC
CTACGCCGGGCGCTTCGGGCTTTGTGCCGCGAGATGGAACAGGCAAGCCT
CCGAAGCTGAGAGAGGGTTGGTTAGACATTGAAGCGATGCGCAAAGCTGC
GAAGTATTTCGAAGGGACACACGACTTCCGGAACTTCTGTAAATTGGACG
TGACGAAACAAATCGAGTCTTTCTACCGAGACATCTTCCGTGCCGACATT
GAGCTTCTCGATGCTCGCACCAATCCACTGGGCTATGTGACTCAGCCGGA
ATTCCAGGCTAGACCGGCCTCAGGTGCGGATGAAAGCGCAGAGTCTTCAG
CGGCACCTCTGCCAACAGCAGCGCAGGTATATGTCTTCCATCTGGAGGGT
TCTGCTTTCCTGTGGCATCAGGTCCGACATATGGTCAATGTCCTTTTCCT
CGTCGGTCAGGGGCTCGAGGAACCATCCATTGTACAGGATCTCCTTGACG
TGACCAAGAACCCGCGAAAACCAACCTACGAGATGGCTTCTGATGCCCCC
CTGGTGCTTTGGGACTGCATCTACCCCGATAAGAAGAGCGGCAGCCGTGC
TGATAGCTTGGATTGGGTTTATGCGGGCGACGTTCGGCAGATCAAGTCTC
ACCTCGGTAAGGGAGGTGGAAAGTTTGGTCTTGGAGGGATTGTAGAGGAG
CTCTGGTCCGTTTGGAGGCAGCGCAAGATGGAGGAAATCCTTGCTGGCGC
ATTACTGGACTTGGCCGTTAGTCAGGGCGACAAGAGGCTCACTATTGGTG
ATGGAGTCGAGCCAATCTGGGAGAGAAAGAACCGGGGTAAGAAAATCTTC
GTTGGGTCGAATGAAGCCAGAACCGGCGGGTACTATGTCCCAGTCATGCA
GAAGAGAAAGACAGAGCTCGTGGAAGTCCAGAACGCGAGGTGGCTGGCGG
CAAAGCAGCGCAGGATGGAGAATGGCGCAAAGGCCACCAAGATGGAATAG
TAGACAGAAGACCGTATATACTTCTTGAATATATGTGCATGATGGTCCCC
ATTGAGCACGAAGTTAT back to topCoding sequence (CDS) from alignment at KZ851967.1:17474..19540+ >M747DRAFT_300108-T1 ID=M747DRAFT_300108-T1|Name=M747DRAFT_300108-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=1827bp|location=Sequence derived from alignment at KZ851967.1:17474..19540+ (Aspergillus niger ATCC 13496)
ATGTCCGGGAACACAGCGGAGGGCCAACAAGTCCCTACCCACGAAACCGA
CTATTCAACATGGACTACGTCGAGACTTGTTGCCCGAATCACTGAACTAG
AACGCCAGTTACATTCCCGCACAGCAGAGTACGCTGCATCCCCTGCGAAG
CAGCCCGAGGACGCGGCCAAAGACGCTGCCAAGAGTGCACCGAGTGATGG
GAAAGTGAACCAGAAGGAGCCTTCATCTCCTGCGGTGGGAGCGGAGAAGA
AGAAGCAGGTGAAGCCGCCAAAGCCGCCGAAACCGCGCCGGGAAATTGAT
CCGTCGAGATACAATACACGGTTCATCGCGTTGAAGTTCGCCTACCTTGG
ACAGCGGTACAATGGGCTTGAGCATGCAAACGGGAATGCCACGCCGCTAC
CTACGATCGAGGAGGAGATGTACAAGGCTCTACGGAAGACGCGGTTGATT
TTCCCGACGGATACAACCGGTGATGAATTCGTGGAGAGCTATGCGCCGAG
AGAGACGAAGCCGTATTATATCAATTGGGATGGATGTGAATATTCCAAGG
CTGGGCGTACGGACCGAGGAGTCAGTGCCTTCGGGCAAGTGATTGGCATT
AGAGTGCGGAGTGCACGGCCGAAGCGCGACGAGGTTGTGCAGTCGGACGA
AAACGCCGATACCACCATGCAGAATACGGACGAGGCTAATGCTTCGGTCG
ACGATGGCTGGGACGACATCAAAGATGAGCTACCCTACGTGAGCATGTTG
AACAAGGTGCTTCCTGAGGATATTCGTGTATTGGCATGGTGCCCGCGTCC
TCCTGAGGGGTTCGATGCCCGCTTTTCTTGCGGGGAACGCCATTACAAGT
ATTTCTTCACGCAGCCAGCCTTTTCTCCTACGCCGGGCGCTTCGGGCTTT
GTGCCGCGAGATGGAACAGGCAAGCCTCCGAAGCTGAGAGAGGGTTGGTT
AGACATTGAAGCGATGCGCAAAGCTGCGAAGTATTTCGAAGGGACACACG
ACTTCCGGAACTTCTGTAAATTGGACGTGACGAAACAAATCGAGTCTTTC
TACCGAGACATCTTCCGTGCCGACATTGAGCTTCTCGATGCTCGCACCAA
TCCACTGGGCTATGTGACTCAGCCGGAATTCCAGGCTAGACCGGCCTCAG
GTGCGGATGAAAGCGCAGAGTCTTCAGCGGCACCTCTGCCAACAGCAGCG
CAGGTATATGTCTTCCATCTGGAGGGTTCTGCTTTCCTGTGGCATCAGGT
CCGACATATGGTCAATGTCCTTTTCCTCGTCGGTCAGGGGCTCGAGGAAC
CATCCATTGTACAGGATCTCCTTGACGTGACCAAGAACCCGCGAAAACCA
ACCTACGAGATGGCTTCTGATGCCCCCCTGGTGCTTTGGGACTGCATCTA
CCCCGATAAGAAGAGCGGCAGCCGTGCTGATAGCTTGGATTGGGTTTATG
CGGGCGACGTTCGGCAGATCAAGTCTCACCTCGGTAAGGGAGGTGGAAAG
TTTGGTCTTGGAGGGATTGTAGAGGAGCTCTGGTCCGTTTGGAGGCAGCG
CAAGATGGAGGAAATCCTTGCTGGCGCATTACTGGACTTGGCCGTTAGTC
AGGGCGACAAGAGGCTCACTATTGGTGATGGAGTCGAGCCAATCTGGGAG
AGAAAGAACCGGGGTAAGAAAATCTTCGTTGGGTCGAATGAAGCCAGAAC
CGGCGGGTACTATGTCCCAGTCATGCAGAAGAGAAAGACAGAGCTCGTGG
AAGTCCAGAACGCGAGGTGGCTGGCGGCAAAGCAGCGCAGGATGGAGAAT
GGCGCAAAGGCCACCAAGATGGAATAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0001522 | pseudouridine synthesis |
| GO:0009451 | RNA modification |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
| GO:0009982 | pseudouridine synthase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09263UAJ |
| DBxref | InterPro:IPR020103 |
| DBxref | InterPro:IPR001406 |
| DBxref | InterPro:IPR020095 |
| DBxref | InterPro:IPR020097 |
| DBxref | PFAM:PF01416 |
| Product | pseudouridine synthase |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KZ851967.1 | supercontig | KZ851967.1:17474..19540 + |
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