You are here

Home

M747DRAFT_305940-T1, M747DRAFT_305940-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_305940-T1
Unique NameM747DRAFT_305940-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851916.1:607800..608405-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_305940-T1 ID=M747DRAFT_305940-T1|Name=M747DRAFT_305940-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=606bp|location=Sequence derived from alignment at KZ851916.1:607800..608405- (Aspergillus niger ATCC 13496)
ATGCAGATCTTCGTCAAGACCCTTACGGGTAAGACTATCACCCTCGAGGT
GGAGTCCTCGGACACCATTGACAATGTCAAGTCCAAGATCCAGGGTAAGC
ATACACACACACACATACCTACAATCACCGGTATTTCTATCAGGCAACAT
TTACTAATGATTATTTACAGACAAGGAGGGTATCCCCCCGGACCAGCAGC
GTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACTCTTTCGGAC
TACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGCGTGG
TGGTGGTAAGAAGCGCAAGAAGAAGGTCTACACCACCCCCAAGAAGATCA
AGCACAAGCACAAGAAGACCAAGCTTGCCGTCCTCAAGTACTACAAGGTC
GACGGTGATGGCAAGATTGAGCGTCTTCGCCGCGAGTGCCCCTCCCCCGA
GGTATGTTTAATTCCGCCTTTGGTTGATCCCTGCAGTTGGCGCAGTTTAC
TGACTTCGTCTCTTAGTGCGGTGCTGGTATCTTCATGGCCGCTATGCACA
ACCGCCAGTACTGCGGAAAGTGCCACCTCACCTACGTCTTCGACGAGTCC
AAATAA
back to top

Coding sequence (CDS) from alignment at KZ851916.1:607800..608405-

>M747DRAFT_305940-T1 ID=M747DRAFT_305940-T1|Name=M747DRAFT_305940-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=1395bp|location=Sequence derived from alignment at KZ851916.1:607800..608405- (Aspergillus niger ATCC 13496)
TGCGGTGCTGGTATCTTCATGGCCGCTATGCACAACCGCCAGTACTGCGG
AAAGTGCCACCTCACCTACGTCTTCGACGAGTCCAAATAAACAAGGAGGG
TATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGG
ACGGCCGTACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCAC
CTGGTGCTCCGCCTGCGTGGTGGTGGTAAGAAGCGCAAGAAGAAGGTCTA
CACCACCCCCAAGAAGATCAAGCACAAGCACAAGAAGACCAAGCTTGCCG
TCCTCAAGTACTACAAGGTCGACGGTGATGGCAAGATTGAGCGTCTTCGC
CGCGAGTGCCCCTCCCCCGAGATGCAGATCTTCGTCAAGACCCTTACGGG
TAAGACTATCACCCTCGAGGTGGAGTCCTCGGACACCATTGACAATGTCA
AGTCCAAGATCCAGGTGCGGTGCTGGTATCTTCATGGCCGCTATGCACAA
CCGCCAGTACTGCGGAAAGTGCCACCTCACCTACGTCTTCGACGAGTCCA
AATAAACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTG
GTAAGCAGCTCGAGGACGGCCGTACTCTTTCGGACTACAACATCCAGAAG
GAGTCCACCCTCCACCTGGTGCTCCGCCTGCGTGGTGGTGGTAAGAAGCG
CAAGAAGAAGGTCTACACCACCCCCAAGAAGATCAAGCACAAGCACAAGA
AGACCAAGCTTGCCGTCCTCAAGTACTACAAGGTCGACGGTGATGGCAAG
ATTGAGCGTCTTCGCCGCGAGTGCCCCTCCCCCGAGATGCAGATCTTCGT
CAAGACCCTTACGGGTAAGACTATCACCCTCGAGGTGGAGTCCTCGGACA
CCATTGACAATGTCAAGTCCAAGATCCAGGTGCGGTGCTGGTATCTTCAT
GGCCGCTATGCACAACCGCCAGTACTGCGGAAAGTGCCACCTCACCTACG
TCTTCGACGAGTCCAAATAAACAAGGAGGGTATCCCCCCGGACCAGCAGC
GTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACTCTTTCGGAC
TACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGCGTGG
TGGTGGTAAGAAGCGCAAGAAGAAGGTCTACACCACCCCCAAGAAGATCA
AGCACAAGCACAAGAAGACCAAGCTTGCCGTCCTCAAGTACTACAAGGTC
GACGGTGATGGCAAGATTGAGCGTCTTCGCCGCGAGTGCCCCTCCCCCGA
GATGCAGATCTTCGTCAAGACCCTTACGGGTAAGACTATCACCCTCGAGG
TGGAGTCCTCGGACACCATTGACAATGTCAAGTCCAAGATCCAGG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
UBI::CRP6M747DRAFT_305940Aspergillus niger ATCC 13496gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_305940-T1M747DRAFT_305940-T1-proteinAspergillus niger ATCC 13496polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_305940-T1.cdsM747DRAFT_305940-T1.cdsAspergillus niger ATCC 13496CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_305940-T1.exon3M747DRAFT_305940-T1.exon3Aspergillus niger ATCC 13496exon
M747DRAFT_305940-T1.exon2M747DRAFT_305940-T1.exon2Aspergillus niger ATCC 13496exon
M747DRAFT_305940-T1.exon1M747DRAFT_305940-T1.exon1Aspergillus niger ATCC 13496exon


Properties
Property NameValue
DBxrefInterPro:IPR029071
DBxrefInterPro:IPR011332
DBxrefInterPro:IPR019954
DBxrefInterPro:IPR038582
DBxrefInterPro:IPR002906
DBxrefInterPro:IPR000626
DBxrefInterPro:IPR019956
DBxrefPFAM:PF14560
DBxrefPFAM:PF00240
DBxrefPFAM:PF01599
DBxrefPFAM:PF11976
ProductUbiquitin-40S ribosomal protein S27a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851916.1supercontigKZ851916.1:607800..608405 -
Powered by Drupal