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Sequences
The following sequences are available for this feature:
mRNA from alignment at KZ851914.1:219869..221299+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >M747DRAFT_331359-T1 ID=M747DRAFT_331359-T1|Name=M747DRAFT_331359-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1431bp|location=Sequence derived from alignment at KZ851914.1:219869..221299+ (Aspergillus niger ATCC 13496) GAATTGACCTTTGTATCTCTTTCTCATCCACCTTACTTTCCCACAGCTTG
TTGGGATATTTATAACCCCCTCTATCCCTGCTTGTTCACCATCAACCCCT
GTCCACAACTAACTCACTTCAACTCATTCACATTTGCTCTCACGGCCAGA
TTTGCATAGTAAGCAAACGTCTCCCCCCACCCAGGTACCCCTCATATCTT
TAACGTCGTTGCTGGCCCTGTGACCCAACAACAACAACTCACCGCAGTGC
TAAGAGCTGACATCTTCAATCAAAGAACTCGGATCTTCTAGACATCCCTA
ATACACCTCCACAAAATGGCTGACACACCTGCACCTCACTCCGGTCCCAT
GTTGACCTTCATCAGTGGCGACGGCGTGCACATTGAGTGTGGTAAGTGCA
CGCGTTTCAATAAGCTCAGCAGACGCGCTCAGTGTCTGTGTCACGATGAG
ACCATATATGCTAACATGTGTGTGAAAATACAGAACGCGATGTTGCCGAG
CGCTCCCTTCTCATCAAGAACATGCTGGAAGATCTGGGTGGCGCCAACGA
GGAGATCCCGATCCCTAATGTGAGTTATCCGTTCGAAGTAAAATGGCCAT
TGGTGACCATAGCTAACCACACCCGCAACACAGGTCAACGAAGCTGTCTT
GAAGAAGGTCATCGAATGGTGCAGACATCACAAGAACGACCCCCCCAGCA
CTGGCGAGGAGGATGACTCCCGCCGCAAGACCACCGACATCGACGAGTGG
GATCAGAAATTTACCCAGGTCGATCAAGAAATGTTGTTCGAGATCATTCT
GGTACGCGTTACGAACTATGATCTACAAAAGCCCCTCAGCTAACTTGGCG
CTTAACTTGATAGGCCGCAAACTACCTCGACATTAAGGGTCTTCTGGACG
TCGGATGCAAAACCGTTGCGAACATGATCAAGGGCAAGTCTCCGGAAGAG
ATCCGCAAGACCTTCAACATCCAGAACGATTTCACCCCCGAGGAGGAGGA
TCAGATCCGCCGTGAGAACGAGTGGGCCGAGGAGTAAGTTCCTTACAAAC
CCATCCCCCGCTATCTTACCACCTGATCGTATGCTAACATTGTACTTGCT
ATAGTCGCTAAATCTGCGTTAAGTTACGGCATCAGTATGCTAGCTTCTAC
GGCTTGTTGATTGGAAGCAAGCCGAGGAAGATTAGCTATCATGATGTTTT
AATTCGGGTCTCATTAGGTCTCAGGTTGCAGTCCATGGAGTTATTAGTCT
TTTTCTTTACTCTCTCAATTTTTTAACGTCAGCGATTTGCTTTCTCAGTC
TCTCTTTTCCCTTTGGCCCTAGCCGTGCGTTCATTATGAGCAGGGGGTAG
ATGTAGCTGTAAAGTAGTTCAAGGTTAGCTAATCCTGTTAACGCCATTGC
ACATATCGTTGTCAAAAAATACTGTTCCACG back to topCoding sequence (CDS) from alignment at KZ851914.1:219869..221299+ >M747DRAFT_331359-T1 ID=M747DRAFT_331359-T1|Name=M747DRAFT_331359-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=2535bp|location=Sequence derived from alignment at KZ851914.1:219869..221299+ (Aspergillus niger ATCC 13496) ATGGCTGACACACCTGCACCTCACTCCGGTCCCATGTTGACCTTCATCAG TGGCGACGGCGTGCACATTGAGTGTGAACGCGATGTTGCCGAGCGCTCCC TTCTCATCAAGAACATGCTGGAAGATCTGGGTGGCGCCAACGAGGAGATC CCGATCCCTAATGTCAACGAAGCTGTCTTGAAGAAGGTCATCGAATGGTG CAGACATCACAAGAACGACCCCCCCAGCACTGGCGAGGAGGATGACTCCC GCCGCAAGACCACCGACATCGACGAGTGGGATCAGAAATTTACCCAGGTC GATCAAGAAATGTTGTTCGAGATCATTCTGGCCGCAAACTACCTCGACAT TAAGGGTCTTCTGGACGTCGGATGCAAAACCGTTGCGAACATGATCAAGG GCAAGTCTCCGGAAGAGATCCGCAAGACCTTCAACATCCAGAACGATTTC ACCCCCGAGGAGGAGGATCAGATCCGCCGTGAGAACGAGTGGGCCGAGGA TCGCTAAATGGCTGACACACCTGCACCTCACTCCGGTCCCATGTTGACCT TCATCAGTGGCGACGGCGTGCACATTGAGTGTGAACGCGATGTTGCCGAG CGCTCCCTTCTCATCAAGAACATGCTGGAAGATCTGGGTGGCGCCAACGA GGAGATCCCGATCCCTAATGTCAACGAAGCTGTCTTGAAGAAGGTCATCG AATGGTGCAGACATCACAAGAACGACCCCCCCAGCACTGGCGAGGAGGAT GACTCCCGCCGCAAGACCACCGACATCGACGAGTGGGATCAGAAATTTAC CCAGGTCGATCAAGAAATGTTGTTCGAGATCATTCTGGCCGCAAACTACC TCGACATTAAGGGTCTTCTGGACGTCGGATGCAAAACCGTTGCGAACATG ATCAAGGGCAAGTCTCCGGAAGAGATCCGCAAGACCTTCAACATCCAGAA CGATTTCACCCCCGAGGAGGAGGATCAGATCCGCCGTGAGAACGAGTGGG CCGAGGATCGCTAAATGGCTGACACACCTGCACCTCACTCCGGTCCCATG TTGACCTTCATCAGTGGCGACGGCGTGCACATTGAGTGTGAACGCGATGT TGCCGAGCGCTCCCTTCTCATCAAGAACATGCTGGAAGATCTGGGTGGCG CCAACGAGGAGATCCCGATCCCTAATGTCAACGAAGCTGTCTTGAAGAAG GTCATCGAATGGTGCAGACATCACAAGAACGACCCCCCCAGCACTGGCGA GGAGGATGACTCCCGCCGCAAGACCACCGACATCGACGAGTGGGATCAGA AATTTACCCAGGTCGATCAAGAAATGTTGTTCGAGATCATTCTGGCCGCA AACTACCTCGACATTAAGGGTCTTCTGGACGTCGGATGCAAAACCGTTGC GAACATGATCAAGGGCAAGTCTCCGGAAGAGATCCGCAAGACCTTCAACA TCCAGAACGATTTCACCCCCGAGGAGGAGGATCAGATCCGCCGTGAGAAC GAGTGGGCCGAGGATCGCTAAATGGCTGACACACCTGCACCTCACTCCGG TCCCATGTTGACCTTCATCAGTGGCGACGGCGTGCACATTGAGTGTGAAC GCGATGTTGCCGAGCGCTCCCTTCTCATCAAGAACATGCTGGAAGATCTG GGTGGCGCCAACGAGGAGATCCCGATCCCTAATGTCAACGAAGCTGTCTT GAAGAAGGTCATCGAATGGTGCAGACATCACAAGAACGACCCCCCCAGCA CTGGCGAGGAGGATGACTCCCGCCGCAAGACCACCGACATCGACGAGTGG GATCAGAAATTTACCCAGGTCGATCAAGAAATGTTGTTCGAGATCATTCT GGCCGCAAACTACCTCGACATTAAGGGTCTTCTGGACGTCGGATGCAAAA CCGTTGCGAACATGATCAAGGGCAAGTCTCCGGAAGAGATCCGCAAGACC TTCAACATCCAGAACGATTTCACCCCCGAGGAGGAGGATCAGATCCGCCG TGAGAACGAGTGGGCCGAGGATCGCTAAATGGCTGACACACCTGCACCTC ACTCCGGTCCCATGTTGACCTTCATCAGTGGCGACGGCGTGCACATTGAG TGTGAACGCGATGTTGCCGAGCGCTCCCTTCTCATCAAGAACATGCTGGA AGATCTGGGTGGCGCCAACGAGGAGATCCCGATCCCTAATGTCAACGAAG CTGTCTTGAAGAAGGTCATCGAATGGTGCAGACATCACAAGAACGACCCC CCCAGCACTGGCGAGGAGGATGACTCCCGCCGCAAGACCACCGACATCGA CGAGTGGGATCAGAAATTTACCCAGGTCGATCAAGAAATGTTGTTCGAGA TCATTCTGGCCGCAAACTACCTCGACATTAAGGGTCTTCTGGACGTCGGA TGCAAAACCGTTGCGAACATGATCAAGGGCAAGTCTCCGGAAGAGATCCG CAAGACCTTCAACATCCAGAACGATTTCACCCCCGAGGAGGAGGATCAGA TCCGCCGTGAGAACGAGTGGGCCGAGGATCGCTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
Term | Definition |
GO:0006511 | ubiquitin-dependent protein catabolic process |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Properties
Property Name | Value |
Note | BUSCO:EOG09264ZWF |
DBxref | InterPro:IPR011333 |
DBxref | InterPro:IPR036296 |
DBxref | InterPro:IPR016073 |
DBxref | InterPro:IPR016072 |
DBxref | InterPro:IPR016897 |
DBxref | InterPro:IPR001232 |
DBxref | PFAM:PF03931 |
DBxref | PFAM:PF01466 |
Product | Skp subunit |
Product | E3 ubiquitin ligase SCF complex |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
KZ851914.1 | supercontig | KZ851914.1:219869..221299 + |
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