You are here

Home

M747DRAFT_333561-T1, M747DRAFT_333561-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_333561-T1
Unique NameM747DRAFT_333561-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851929.1:281114..283034+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_333561-T1 ID=M747DRAFT_333561-T1|Name=M747DRAFT_333561-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1921bp|location=Sequence derived from alignment at KZ851929.1:281114..283034+ (Aspergillus niger ATCC 13496)
CCGGCGATCGAAAGGCATCTGGCTGACACGGTCTGCCCGACGGAGCATAA
AAGGGCGGTTCCCTTTGCGGTCTGTTTCGTTCGCCATCACTCTCGTCACT
TCCTGGGCCAATCCAAACTTTTCTTCCGAAACCTATCTACTCAAAAGCCT
TTCCGTGCACACTCCGAGGACCATGTCTTCCACTTCCGATCGACAGTATG
ACGAAACGATAACTCGCCTAGTTGAGTATGTTTATCACTACGAAGTGACC
AGCGACCTCGCTATCCTACGGGCCCGCTATGCCCTCATGGATGCTCTTGG
TTGCGCGCTGGAGACTCTTCAGCAAAGCCCCGAGTGTCGCGCTCTGATCG
GCCCATACACACCAGGTCTGGTCGCCCCTTATGGGTTCAAGCTGCCGGGC
ACCTGCCACCAACTTGATCCAGTCAAGGGTGCCTTTGATATGGCAACCTT
GATTCGCTTCCTGGACCACAACGATGCATACCCTGGTGCTGAATGGGGCC
ACCCGTCTGGTATGCCCGTCTGCGGGATCTACGCTCCCAGAAGCTTGGTT
GAATATAGGGCTAACCGATCGACAAAACAGATAACCTGGGCGCCATCTTG
GCGGTCACAGATTGGCTCAGCCGTACAGGCGCCACCAGCCAGCCACTGAC
CGTCCGGACGGTCCTGATCGCGATGATCAAAGCCTACGAGATTCAAGGCT
GCTACCAGATCCGCAATGCCTTCAACAAGGTGGGCCTAGATCATACGCTA
CTCGTGAAGATCGCCTCCACAGCTGTTGTAGCTTGGTTGATGGGTCTGAC
GGAGAAACAAGCCGCCGTCGCGCTCTCCCATGCGTGGGCTGATGGCCACC
CTCTGCGCATTTTCCGTCAAAGTCCTAATGCGGGGCCACGCAAGGGCTGG
GCCGCTGGAGATGCCGCCATGCGTGCTGTACACTTGTGCTTACTAGCTCG
CGCCGGCCAGCCAGGCATTCCCAGCGCGCTAACTGAGCCGGAATGGGGGT
TTCTCGCTGTCAGCTTTGGGGGCAAAGAGCTGCAGCTGCCACGTCCTTTC
AAGACCCGGGTGATGGAGGAAGTTTTCTTCAAACTCATCACTGCAGAGGG
CCACGGCATCTCCGCAGTTCAGGCGGCCATGGCGCTGGCTGAGACCATGG
CCAGCAGGGGGATCGATCCTGCTACTGAAATCAGTCGCATCGATATCCGC
ACGCATGAAGCGGCTGTACGCATCATCGACAAGCAAGGCCCGCTCACCAA
TGCGGCCGACCGCGATCACTGCATGCGGTACATGGTCTCGGTGGTGTTGT
TGAAGAACGCGATCATCGAAGCAGAGGACTACCACGATTCGAGCGTGTGG
GCCCATGATCCGCGTGTTGAGGCCCTACGCCAGCGGATCCATATGGCCGA
AGACCCGCAGTTCACCTACGGCTACCACCACAAAAAGGCGGCCGCCAGCG
GACTCACCGTCTTTCTGACCAACGGGGAGCAGTTAGACGAAGTAGTCGTC
GAATACCCAATCGGGCATCCGATGCACGAAGATACTTTGCCTAAGGTGCG
CGCCAAGTTTGAGCGAAACATGCAGGGCCTGTTCACGGCCGAGGAGACAA
GCCGGGTGATCGACGCGATCCATCAGGACAAACTTCCGGTGCATCGATTG
GTCGACCTGCTGGGCCGATGATCGCTACTAATCGCTAGTACGGGAACAGG
TGGATTTTGGACAGGAGCTTGACGAGCTTGGCGAGTCTTCGCTGCTGGGT
TTTTGGAACGATAGTGCATATAGTATCAACCCGGTCGAGAATAGACCGGT
ATGATCAATTTGATTAGTATAATTCAGTGATGTGATGTGCGGTGGGTGTG
ATCCTGCATGATAAAAGTGTGATAGCAATGCGACCCCTACAATTTGCTTC
TTCAAGTACAGTCTCTGGCTG
back to top

Coding sequence (CDS) from alignment at KZ851929.1:281114..283034+

>M747DRAFT_333561-T1 ID=M747DRAFT_333561-T1|Name=M747DRAFT_333561-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=2856bp|location=Sequence derived from alignment at KZ851929.1:281114..283034+ (Aspergillus niger ATCC 13496)
ATGTCTTCCACTTCCGATCGACAGTATGACGAAACGATAACTCGCCTAGT
TGAGTATGTTTATCACTACGAAGTGACCAGCGACCTCGCTATCCTACGGG
CCCGCTATGCCCTCATGGATGCTCTTGGTTGCGCGCTGGAGACTCTTCAG
CAAAGCCCCGAGTGTCGCGCTCTGATCGGCCCATACACACCAGGTCTGGT
CGCCCCTTATGGGTTCAAGCTGCCGGGCACCTGCCACCAACTTGATCCAG
TCAAGGGTGCCTTTGATATGGCAACCTTGATTCGCTTCCTGGACCACAAC
GATGCATACCCTGGTGCTGAATGGGGCCACCCGTCTGATAACCTGGGCGC
CATCTTGGCGGTCACAGATTGGCTCAGCCGTACAGGCGCCACCAGCCAGC
CACTGACCGTCCGGACGGTCCTGATCGCGATGATCAAAGCCTACGAGATT
CAAGGCTGCTACCAGATCCGCAATGCCTTCAACAAGGTGGGCCTAGATCA
TACGCTACTCGTGAAGATCGCCTCCACAGCTGTTGTAGCTTGGTTGATGG
GTCTGACGGAGAAACAAGCCGCCGTCGCGCTCTCCCATGCGTGGGCTGAT
GGCCACCCTCTGCGCATTTTCCGTCAAAGTCCTAATGCGGGGCCACGCAA
GGGCTGGGCCGCTGGAGATGCCGCCATGCGTGCTGTACACTTGTGCTTAC
TAGCTCGCGCCGGCCAGCCAGGCATTCCCAGCGCGCTAACTGAGCCGGAA
TGGGGGTTTCTCGCTGTCAGCTTTGGGGGCAAAGAGCTGCAGCTGCCACG
TCCTTTCAAGACCCGGGTGATGGAGGAAGTTTTCTTCAAACTCATCACTG
CAGAGGGCCACGGCATCTCCGCAGTTCAGGCGGCCATGGCGCTGGCTGAG
ACCATGGCCAGCAGGGGGATCGATCCTGCTACTGAAATCAGTCGCATCGA
TATCCGCACGCATGAAGCGGCTGTACGCATCATCGACAAGCAAGGCCCGC
TCACCAATGCGGCCGACCGCGATCACTGCATGCGGTACATGGTCTCGGTG
GTGTTGTTGAAGAACGCGATCATCGAAGCAGAGGACTACCACGATTCGAG
CGTGTGGGCCCATGATCCGCGTGTTGAGGCCCTACGCCAGCGGATCCATA
TGGCCGAAGACCCGCAGTTCACCTACGGCTACCACCACAAAAAGGCGGCC
GCCAGCGGACTCACCGTCTTTCTGACCAACGGGGAGCAGTTAGACGAAGT
AGTCGTCGAATACCCAATCGGGCATCCGATGCACGAAGATACTTTGCCTA
AGGTGCGCGCCAAGTTTGAGCGAAACATGCAGGGCCTGTTCACGGCCGAG
GAGACAAGCCGGGTGATCGACGCGATCCATCAGGACAAACTTCCGGTGCA
TCGATTGGTCGACCTGCTGGGCCGATGAATGTCTTCCACTTCCGATCGAC
AGTATGACGAAACGATAACTCGCCTAGTTGAGTATGTTTATCACTACGAA
GTGACCAGCGACCTCGCTATCCTACGGGCCCGCTATGCCCTCATGGATGC
TCTTGGTTGCGCGCTGGAGACTCTTCAGCAAAGCCCCGAGTGTCGCGCTC
TGATCGGCCCATACACACCAGGTCTGGTCGCCCCTTATGGGTTCAAGCTG
CCGGGCACCTGCCACCAACTTGATCCAGTCAAGGGTGCCTTTGATATGGC
AACCTTGATTCGCTTCCTGGACCACAACGATGCATACCCTGGTGCTGAAT
GGGGCCACCCGTCTGATAACCTGGGCGCCATCTTGGCGGTCACAGATTGG
CTCAGCCGTACAGGCGCCACCAGCCAGCCACTGACCGTCCGGACGGTCCT
GATCGCGATGATCAAAGCCTACGAGATTCAAGGCTGCTACCAGATCCGCA
ATGCCTTCAACAAGGTGGGCCTAGATCATACGCTACTCGTGAAGATCGCC
TCCACAGCTGTTGTAGCTTGGTTGATGGGTCTGACGGAGAAACAAGCCGC
CGTCGCGCTCTCCCATGCGTGGGCTGATGGCCACCCTCTGCGCATTTTCC
GTCAAAGTCCTAATGCGGGGCCACGCAAGGGCTGGGCCGCTGGAGATGCC
GCCATGCGTGCTGTACACTTGTGCTTACTAGCTCGCGCCGGCCAGCCAGG
CATTCCCAGCGCGCTAACTGAGCCGGAATGGGGGTTTCTCGCTGTCAGCT
TTGGGGGCAAAGAGCTGCAGCTGCCACGTCCTTTCAAGACCCGGGTGATG
GAGGAAGTTTTCTTCAAACTCATCACTGCAGAGGGCCACGGCATCTCCGC
AGTTCAGGCGGCCATGGCGCTGGCTGAGACCATGGCCAGCAGGGGGATCG
ATCCTGCTACTGAAATCAGTCGCATCGATATCCGCACGCATGAAGCGGCT
GTACGCATCATCGACAAGCAAGGCCCGCTCACCAATGCGGCCGACCGCGA
TCACTGCATGCGGTACATGGTCTCGGTGGTGTTGTTGAAGAACGCGATCA
TCGAAGCAGAGGACTACCACGATTCGAGCGTGTGGGCCCATGATCCGCGT
GTTGAGGCCCTACGCCAGCGGATCCATATGGCCGAAGACCCGCAGTTCAC
CTACGGCTACCACCACAAAAAGGCGGCCGCCAGCGGACTCACCGTCTTTC
TGACCAACGGGGAGCAGTTAGACGAAGTAGTCGTCGAATACCCAATCGGG
CATCCGATGCACGAAGATACTTTGCCTAAGGTGCGCGCCAAGTTTGAGCG
AAACATGCAGGGCCTGTTCACGGCCGAGGAGACAAGCCGGGTGATCGACG
CGATCCATCAGGACAAACTTCCGGTGCATCGATTGGTCGACCTGCTGGGC
CGATGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0019629propionate catabolic process, 2-methylcitrate cycle
Vocabulary: Molecular Function
TermDefinition
GO:00515372 iron, 2 sulfur cluster binding
GO:00475472-methylcitrate dehydratase activity
GO:0016829lyase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
M747DRAFT_333561M747DRAFT_333561Aspergillus niger ATCC 13496gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_333561-T1.utr5p1M747DRAFT_333561-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_333561-T1.exon1M747DRAFT_333561-T1.exon1Aspergillus niger ATCC 13496exon
M747DRAFT_333561-T1.exon2M747DRAFT_333561-T1.exon2Aspergillus niger ATCC 13496exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_333561-T1.cdsM747DRAFT_333561-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_333561-T1.utr3p1M747DRAFT_333561-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_333561-T1M747DRAFT_333561-T1-proteinAspergillus niger ATCC 13496polypeptide


Properties
Property NameValue
NoteEggNog:ENOG41
DBxrefInterPro:IPR036148
DBxrefInterPro:IPR042183
DBxrefInterPro:IPR012705
DBxrefInterPro:IPR005656
DBxrefInterPro:IPR042188
DBxrefPFAM:PF03972
Product2-methylcitrate dehydratase
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851929.1supercontigKZ851929.1:281114..283034 +
Powered by Drupal