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Sequences
The following sequences are available for this feature:
mRNA from alignment at KZ851899.1:179884..180402+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >M747DRAFT_336215-T1 ID=M747DRAFT_336215-T1|Name=M747DRAFT_336215-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=519bp|location=Sequence derived from alignment at KZ851899.1:179884..180402+ (Aspergillus niger ATCC 13496)
ATGGCCGACACCGAGGATGCGGGCACATCGTCCGTCTCCGAACCCTTAGA
TCTGGTGCGCCTGTCGCTCGATGAAATCGTCTTTGTCAAACTGCGCGGCG
ATCGCGAGCTCAAGGGTCGTCTCCATGTGAGTCTTACGCCGACCTCCGAC
TTCTGACTACGTGGCGTTTTACTGACATATGGTCTGTGGTAGGCATACGA
TAGCCATTGCAACCTGGTGCTAGGAGATGTTGAGGAGACCATCTACGTGG
TGGAGGAAGACGAGAACGAGCAAGAGACCCTCCGAGTACGTCGCTCTATC
CATCTACCTCGGTTATAGTACAACCAGTTAGGGGGGAGGCTATATTAGTG
CGGTGCTGGGCTAACGCAGAATGATCGTCTTTAGACCATCAAGAAGCAAG
AAGAGATGCTCTTCGTTCGAGGTGCGTTTTGTGATGCCGTTCCCGGCAGA
GCCCGGGGCTTGTCATACTGACCTTTCGTAATAGGAGACTCCGTCGTTCT
GATTTCGCCTCAGGCATAA back to topCoding sequence (CDS) from alignment at KZ851899.1:179884..180402+ >M747DRAFT_336215-T1 ID=M747DRAFT_336215-T1|Name=M747DRAFT_336215-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=1164bp|location=Sequence derived from alignment at KZ851899.1:179884..180402+ (Aspergillus niger ATCC 13496)
ATGGCCGACACCGAGGATGCGGGCACATCGTCCGTCTCCGAACCCTTAGA
TCTGGTGCGCCTGTCGCTCGATGAAATCGTCTTTGTCAAACTGCGCGGCG
ATCGCGAGCTCAAGGGTCGTCTCCATGCATACGATAGCCATTGCAACCTG
GTGCTAGGAGATGTTGAGGAGACCATCTACGTGGTGGAGGAAGACGAGAA
CGAGCAAGAGACCCTCCGAACCATCAAGAAGCAAGAAGAGATGCTCTTCG
TTCGAGGAGACTCCGTCGTTCTGATTTCGCCTCAGGCATAAATGGCCGAC
ACCGAGGATGCGGGCACATCGTCCGTCTCCGAACCCTTAGATCTGGTGCG
CCTGTCGCTCGATGAAATCGTCTTTGTCAAACTGCGCGGCGATCGCGAGC
TCAAGGGTCGTCTCCATGCATACGATAGCCATTGCAACCTGGTGCTAGGA
GATGTTGAGGAGACCATCTACGTGGTGGAGGAAGACGAGAACGAGCAAGA
GACCCTCCGAACCATCAAGAAGCAAGAAGAGATGCTCTTCGTTCGAGGAG
ACTCCGTCGTTCTGATTTCGCCTCAGGCATAAATGGCCGACACCGAGGAT
GCGGGCACATCGTCCGTCTCCGAACCCTTAGATCTGGTGCGCCTGTCGCT
CGATGAAATCGTCTTTGTCAAACTGCGCGGCGATCGCGAGCTCAAGGGTC
GTCTCCATGCATACGATAGCCATTGCAACCTGGTGCTAGGAGATGTTGAG
GAGACCATCTACGTGGTGGAGGAAGACGAGAACGAGCAAGAGACCCTCCG
AACCATCAAGAAGCAAGAAGAGATGCTCTTCGTTCGAGGAGACTCCGTCG
TTCTGATTTCGCCTCAGGCATAAATGGCCGACACCGAGGATGCGGGCACA
TCGTCCGTCTCCGAACCCTTAGATCTGGTGCGCCTGTCGCTCGATGAAAT
CGTCTTTGTCAAACTGCGCGGCGATCGCGAGCTCAAGGGTCGTCTCCATG
CATACGATAGCCATTGCAACCTGGTGCTAGGAGATGTTGAGGAGACCATC
TACGTGGTGGAGGAAGACGAGAACGAGCAAGAGACCCTCCGAACCATCAA
GAAGCAAGAAGAGATGCTCTTCGTTCGAGGAGACTCCGTCGTTCTGATTT
CGCCTCAGGCATAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000956 | nuclear-transcribed mRNA catabolic process |
| GO:0000398 | mRNA splicing, via spliceosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR010920 |
| DBxref | InterPro:IPR034105 |
| DBxref | InterPro:IPR001163 |
| DBxref | PFAM:PF01423 |
| Product | U4/U6-U5 snRNP complex subunit lsm3 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KZ851899.1 | supercontig | KZ851899.1:179884..180402 + |
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