You are here

Home

M747DRAFT_338504-T1, M747DRAFT_338504-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_338504-T1
Unique NameM747DRAFT_338504-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851904.1:375052..376246+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_338504-T1 ID=M747DRAFT_338504-T1|Name=M747DRAFT_338504-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1195bp|location=Sequence derived from alignment at KZ851904.1:375052..376246+ (Aspergillus niger ATCC 13496)
ATGGCTGAAGCTGATTCCTTCCTTCACCTCGCTCGCCCTCTGGGCCCCGT
GGCAGTGGGGACTGCACCGACAACCGCCCCTCTGAACGTTGTCATCCAAC
CTCAGGTACGTGTTTTATGGCTGGATCAGGCAGCCCTCTTCGACCGGAGC
CAGAATGCTAATACTATGGGCTAGGCGCTCTTCTCGATCCTGGACCACTC
CCTTCGTCGCAACGCTGACCAGGAGCGTGTCATCGGTACTCTGCTGGGAA
CCAGATCCGAGGATGGAACCGAGGTGGAAATTCGCAGCACTTTCGCTGTT
GGACACACGGAGACGACAGACCAGGTTGAGGTGGACATGGAATACCAGAA
GCAGATGCTTGCGTTGCACCTGAAGGCCAACCCCAAGGAAGTGCTCGTGG
GTTGGTACGCCACCTCGTCCGAGCTGAACACCTTTTCCGCTTTGATCCAG
AACTTCTACAGCGGCCAGGGTGATGGCACGTGGCCTCACCCTGCCGTCCA
CTTGACCGTGTCCACCGAGGCTGGCAAGGATATCGAGACCCGCGCCTACA
TCTCCGCCCCCGTTGGTGTGACCGCGGAGAGAGCCGCCGACAGCGCCGCC
TTCATCCCCGTCCCTTACGAGATCCGCTACGGCGAGGCCGAGAAGAGTGG
TCTGGAGGCTATTGGTGCGGCCCGTGATGCCGAGGAGCGCCGTGCCAACA
TCTTCACTGATATCGAGGCTCTGGAGCGTGCGATTGAGGATGTTCTGGGC
ATGATCGACCGGGTTTCCCGCTACGTTGAGTCTGTCATTGACGAGGAGGC
TCCTGCTTCGACGGCCTTGGGCCAGTACCTGCTCAACACCCTGGCTCTGG
CGCCTAAGGTTGAGCCTGCTGACATTGAGCGTGACTTGTATGTTGCCCCC
TCCCCTCTTCTTCCCTTAACCCCCCCTAGTTATCAGCCCAATATTAAGTA
CCAAACTAACCGAAATCAACAGCAACAACCACATCCAGGACGTCCTGGTC
GTGTCCTACCTGGCCAACACCATCCGTACACAGATGGAGCTGTCCAACCG
GCTAGCAACCGCCCAGCTGACTCTGGGAGGCGAGTCCGGCAGCGGCGAGT
CGGGCGACAAGCGCGGCGGCCAACGGGGCGGCAAAGGAGGCCGGGGCGGG
CAACAGCGGACTCAAGAACGGAGCGGAGAGGAGGCTCGCGCGTAA
back to top

Coding sequence (CDS) from alignment at KZ851904.1:375052..376246+

>M747DRAFT_338504-T1 ID=M747DRAFT_338504-T1|Name=M747DRAFT_338504-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=3123bp|location=Sequence derived from alignment at KZ851904.1:375052..376246+ (Aspergillus niger ATCC 13496)
ATGGCTGAAGCTGATTCCTTCCTTCACCTCGCTCGCCCTCTGGGCCCCGT
GGCAGTGGGGACTGCACCGACAACCGCCCCTCTGAACGTTGTCATCCAAC
CTCAGGCGCTCTTCTCGATCCTGGACCACTCCCTTCGTCGCAACGCTGAC
CAGGAGCGTGTCATCGGTACTCTGCTGGGAACCAGATCCGAGGATGGAAC
CGAGGTGGAAATTCGCAGCACTTTCGCTGTTGGACACACGGAGACGACAG
ACCAGGTTGAGGTGGACATGGAATACCAGAAGCAGATGCTTGCGTTGCAC
CTGAAGGCCAACCCCAAGGAAGTGCTCGTGGGTTGGTACGCCACCTCGTC
CGAGCTGAACACCTTTTCCGCTTTGATCCAGAACTTCTACAGCGGCCAGG
GTGATGGCACGTGGCCTCACCCTGCCGTCCACTTGACCGTGTCCACCGAG
GCTGGCAAGGATATCGAGACCCGCGCCTACATCTCCGCCCCCGTTGGTGT
GACCGCGGAGAGAGCCGCCGACAGCGCCGCCTTCATCCCCGTCCCTTACG
AGATCCGCTACGGCGAGGCCGAGAAGAGTGGTCTGGAGGCTATTGGTGCG
GCCCGTGATGCCGAGGAGCGCCGTGCCAACATCTTCACTGATATCGAGGC
TCTGGAGCGTGCGATTGAGGATGTTCTGGGCATGATCGACCGGGTTTCCC
GCTACGTTGAGTCTGTCATTGACGAGGAGGCTCCTGCTTCGACGGCCTTG
GGCCAGTACCTGCTCAACACCCTGGCTCTGGCGCCTAAGGTTGAGCCTGC
TGACATTGAGCGTGACTTCAACAACCACATCCAGGACGTCCTGGTCGTGT
CCTACCTGGCCAACACCATCCGTACACAGATGGAGCTGTCCAACCGGCTA
GCAACCGCCCAGCTGACTCTGGGAGGCGAGTCCGGCAGCGGCGAGTCGGG
CGACAAGCGCGGCGGCCAACGGGGCGGCAAAGGAGGCCGGGGCGGGCAAC
AGCGGACTCAAGAACGGAGCGGAGAGGAGGCTCGCGCGTAAATGGCTGAA
GCTGATTCCTTCCTTCACCTCGCTCGCCCTCTGGGCCCCGTGGCAGTGGG
GACTGCACCGACAACCGCCCCTCTGAACGTTGTCATCCAACCTCAGGCGC
TCTTCTCGATCCTGGACCACTCCCTTCGTCGCAACGCTGACCAGGAGCGT
GTCATCGGTACTCTGCTGGGAACCAGATCCGAGGATGGAACCGAGGTGGA
AATTCGCAGCACTTTCGCTGTTGGACACACGGAGACGACAGACCAGGTTG
AGGTGGACATGGAATACCAGAAGCAGATGCTTGCGTTGCACCTGAAGGCC
AACCCCAAGGAAGTGCTCGTGGGTTGGTACGCCACCTCGTCCGAGCTGAA
CACCTTTTCCGCTTTGATCCAGAACTTCTACAGCGGCCAGGGTGATGGCA
CGTGGCCTCACCCTGCCGTCCACTTGACCGTGTCCACCGAGGCTGGCAAG
GATATCGAGACCCGCGCCTACATCTCCGCCCCCGTTGGTGTGACCGCGGA
GAGAGCCGCCGACAGCGCCGCCTTCATCCCCGTCCCTTACGAGATCCGCT
ACGGCGAGGCCGAGAAGAGTGGTCTGGAGGCTATTGGTGCGGCCCGTGAT
GCCGAGGAGCGCCGTGCCAACATCTTCACTGATATCGAGGCTCTGGAGCG
TGCGATTGAGGATGTTCTGGGCATGATCGACCGGGTTTCCCGCTACGTTG
AGTCTGTCATTGACGAGGAGGCTCCTGCTTCGACGGCCTTGGGCCAGTAC
CTGCTCAACACCCTGGCTCTGGCGCCTAAGGTTGAGCCTGCTGACATTGA
GCGTGACTTCAACAACCACATCCAGGACGTCCTGGTCGTGTCCTACCTGG
CCAACACCATCCGTACACAGATGGAGCTGTCCAACCGGCTAGCAACCGCC
CAGCTGACTCTGGGAGGCGAGTCCGGCAGCGGCGAGTCGGGCGACAAGCG
CGGCGGCCAACGGGGCGGCAAAGGAGGCCGGGGCGGGCAACAGCGGACTC
AAGAACGGAGCGGAGAGGAGGCTCGCGCGTAAATGGCTGAAGCTGATTCC
TTCCTTCACCTCGCTCGCCCTCTGGGCCCCGTGGCAGTGGGGACTGCACC
GACAACCGCCCCTCTGAACGTTGTCATCCAACCTCAGGCGCTCTTCTCGA
TCCTGGACCACTCCCTTCGTCGCAACGCTGACCAGGAGCGTGTCATCGGT
ACTCTGCTGGGAACCAGATCCGAGGATGGAACCGAGGTGGAAATTCGCAG
CACTTTCGCTGTTGGACACACGGAGACGACAGACCAGGTTGAGGTGGACA
TGGAATACCAGAAGCAGATGCTTGCGTTGCACCTGAAGGCCAACCCCAAG
GAAGTGCTCGTGGGTTGGTACGCCACCTCGTCCGAGCTGAACACCTTTTC
CGCTTTGATCCAGAACTTCTACAGCGGCCAGGGTGATGGCACGTGGCCTC
ACCCTGCCGTCCACTTGACCGTGTCCACCGAGGCTGGCAAGGATATCGAG
ACCCGCGCCTACATCTCCGCCCCCGTTGGTGTGACCGCGGAGAGAGCCGC
CGACAGCGCCGCCTTCATCCCCGTCCCTTACGAGATCCGCTACGGCGAGG
CCGAGAAGAGTGGTCTGGAGGCTATTGGTGCGGCCCGTGATGCCGAGGAG
CGCCGTGCCAACATCTTCACTGATATCGAGGCTCTGGAGCGTGCGATTGA
GGATGTTCTGGGCATGATCGACCGGGTTTCCCGCTACGTTGAGTCTGTCA
TTGACGAGGAGGCTCCTGCTTCGACGGCCTTGGGCCAGTACCTGCTCAAC
ACCCTGGCTCTGGCGCCTAAGGTTGAGCCTGCTGACATTGAGCGTGACTT
CAACAACCACATCCAGGACGTCCTGGTCGTGTCCTACCTGGCCAACACCA
TCCGTACACAGATGGAGCTGTCCAACCGGCTAGCAACCGCCCAGCTGACT
CTGGGAGGCGAGTCCGGCAGCGGCGAGTCGGGCGACAAGCGCGGCGGCCA
ACGGGGCGGCAAAGGAGGCCGGGGCGGGCAACAGCGGACTCAAGAACGGA
GCGGAGAGGAGGCTCGCGCGTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005852eukaryotic translation initiation factor 3 complex
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: Molecular Function
TermDefinition
GO:0031369translation initiation factor binding
GO:0003743translation initiation factor activity
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
M747DRAFT_338504M747DRAFT_338504Aspergillus niger ATCC 13496gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_338504-T1.exon1M747DRAFT_338504-T1.exon1Aspergillus niger ATCC 13496exon
M747DRAFT_338504-T1.exon2M747DRAFT_338504-T1.exon2Aspergillus niger ATCC 13496exon
M747DRAFT_338504-T1.exon3M747DRAFT_338504-T1.exon3Aspergillus niger ATCC 13496exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_338504-T1.cdsM747DRAFT_338504-T1.cdsAspergillus niger ATCC 13496CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_338504-T1M747DRAFT_338504-T1-proteinAspergillus niger ATCC 13496polypeptide


Properties
Property NameValue
NoteMEROPS:MER0030133
DBxrefInterPro:IPR037518
DBxrefInterPro:IPR027531
DBxrefInterPro:IPR024969
DBxrefInterPro:IPR000555
DBxrefPFAM:PF13012
DBxrefPFAM:PF01398
Producteukaryotic translation initiation factor 3 subunit F
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851904.1supercontigKZ851904.1:375052..376246 +
Powered by Drupal