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M747DRAFT_359088-T1, M747DRAFT_359088-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_359088-T1
Unique NameM747DRAFT_359088-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851941.1:166384..167871+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_359088-T1 ID=M747DRAFT_359088-T1|Name=M747DRAFT_359088-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1488bp|location=Sequence derived from alignment at KZ851941.1:166384..167871+ (Aspergillus niger ATCC 13496)
ATGCGCGCCAGCATTCTACCGTTGACTCTGTTCTTGGCCACTCTGGCCGG
GGCGCAACTCTCCGGCCCCGTTGGCCCGCTAGTGGACTACAGCACCAAAG
CCAGAAACCAGACCTGCAATATCATCGATTACGGGGCTGTCGCAGATGGT
AAAACGGATATATCGCAGGCTCTACTTGATGCCTGGGGAAACTGTTCCGT
GGGGGGACTGGTCTACATCCCACCCGGTAACTACTCGCTGGCCGAGGACA
TTGAGCTCAAGCACGGCCAGTCCTCTGCAATTCAGCTAGACGGTGTGGTT
ATGCGCGGACACCGCGGCTCGTACCAGATGATCCTTATCCGTGACTGCAA
TGACTTCGAATTTTTCAGCGGCAATTCCCGCGGGGCCATTCAGGGCTTTG
GTTACGAATATCTGCAGAATGACACCTACGGCGAGAGACTCTTGCGCATC
CAAGAGGTTAACAATTTCTCGGTGCATGGATTCGCACTAATTGACTCGCC
TTCCTACTACATTGTTTTCGATACGGTCACCAGTGGGGAGGTATATAACA
TCTTGATCCGCGGCGTGACATCTGTGGGAGCGACAGATGCTATCGACGTA
TGGGGAGAGAACATGTGGTTCCATGACATTGAAGTGAGCAACGGCGATGA
ATGTGTCACCGTCAAGTCTCCGGCGCACAATTATCTGATTGAGAACATCT
ACTGCAATCTCAGTGGTGGGACCGCGATTGGATCCTTAGGCACGGGCACC
AACATTTCCGACATCCACTACCGCAATCTCTACATGAACCAAGCAGATGC
GTGCTTTCTGAAATCCAACAATGGGGATGGGATTGTCAAAAATATCATCT
GGGAGAATGTCATAGTCCACGGCGGTCCGTACCCGCTGGCCATAGACGAG
GCCTGGGGAGATGATCGAGGATCCGTAGGAGTTCAAGTGTCCAACCTCAC
ATTCCGAGTAAGTACACGATAATATTTCAATGTCTTAAGAGATCCTAATT
TGCTTTGTTATATAGAACTGGCACGGAGAATCCGTGAGCGCCTCACGCCC
AGTCATCCGCCTACAATGTGACTCCGACGTCCCGTGCTACGATATTACCA
TCGAAAACGTGAACCTGTGGGCCAACGACAGCAACTATGTGGTTTGGCAG
TGCGAGAACGCCTATGGAGATGGGGCCTGTCTCTCTAGTGCAGAGGGAAC
AAAAGATTTGGAAACCTTTACCAGCAAACAAACTATAACTGCCACCCCGT
ATGTGACTTGTCCATTCTTTTCCACGGAAATTGCTAACAAGAAGATAGGT
CCTATGCTGCGCCAACCATGGCAGCTGACTTCACCTTTAATCTGCCATCA
ACGAGCCCTTTTACTATTCCTCCCATGCCGACAAGTTTCTACCCCGGTGC
TACTCCCATCTCAACCCTCTTGCATCTACATGGTGCGGGCGGTCTCCCAT
CAGCATCTCCCATTTCGCATCATCGACGACACCAATGA
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Coding sequence (CDS) from alignment at KZ851941.1:166384..167871+

>M747DRAFT_359088-T1 ID=M747DRAFT_359088-T1|Name=M747DRAFT_359088-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=4140bp|location=Sequence derived from alignment at KZ851941.1:166384..167871+ (Aspergillus niger ATCC 13496)
ATGCGCGCCAGCATTCTACCGTTGACTCTGTTCTTGGCCACTCTGGCCGG
GGCGCAACTCTCCGGCCCCGTTGGCCCGCTAGTGGACTACAGCACCAAAG
CCAGAAACCAGACCTGCAATATCATCGATTACGGGGCTGTCGCAGATGGT
AAAACGGATATATCGCAGGCTCTACTTGATGCCTGGGGAAACTGTTCCGT
GGGGGGACTGGTCTACATCCCACCCGGTAACTACTCGCTGGCCGAGGACA
TTGAGCTCAAGCACGGCCAGTCCTCTGCAATTCAGCTAGACGGTGTGGTT
ATGCGCGGACACCGCGGCTCGTACCAGATGATCCTTATCCGTGACTGCAA
TGACTTCGAATTTTTCAGCGGCAATTCCCGCGGGGCCATTCAGGGCTTTG
GTTACGAATATCTGCAGAATGACACCTACGGCGAGAGACTCTTGCGCATC
CAAGAGGTTAACAATTTCTCGGTGCATGGATTCGCACTAATTGACTCGCC
TTCCTACTACATTGTTTTCGATACGGTCACCAGTGGGGAGGTATATAACA
TCTTGATCCGCGGCGTGACATCTGTGGGAGCGACAGATGCTATCGACGTA
TGGGGAGAGAACATGTGGTTCCATGACATTGAAGTGAGCAACGGCGATGA
ATGTGTCACCGTCAAGTCTCCGGCGCACAATTATCTGATTGAGAACATCT
ACTGCAATCTCAGTGGTGGGACCGCGATTGGATCCTTAGGCACGGGCACC
AACATTTCCGACATCCACTACCGCAATCTCTACATGAACCAAGCAGATGC
GTGCTTTCTGAAATCCAACAATGGGGATGGGATTGTCAAAAATATCATCT
GGGAGAATGTCATAGTCCACGGCGGTCCGTACCCGCTGGCCATAGACGAG
GCCTGGGGAGATGATCGAGGATCCGTAGGAGTTCAAGTGTCCAACCTCAC
ATTCCGAAACTGGCACGGAGAATCCGTGAGCGCCTCACGCCCAGTCATCC
GCCTACAATGTGACTCCGACGTCCCGTGCTACGATATTACCATCGAAAAC
GTGAACCTGTGGGCCAACGACAGCAACTATGTGGTTTGGCAGTGCGAGAA
CGCCTATGGAGATGGGGCCTGTCTCTCTAGTGCAGAGGGAACAAAAGATT
TGGAAACCTTTACCAGCAAACAAACTATAACTGCCACCCCGTCCTATGCT
GCGCCAACCATGGCAGCTGACTTCACCTTTAATCTGCCATCAACGAGCCC
TTTTACTATTCCTCCCATGCCGACAAGTTTCTACCCCGGTGCTACTCCCA
TCTCAACCCTCTTGCATCTACATGGTGCGGGCGGTCTCCCATCAGCATCT
CCCATTTCGCATCATCGACGACACCAATGAATGCGCGCCAGCATTCTACC
GTTGACTCTGTTCTTGGCCACTCTGGCCGGGGCGCAACTCTCCGGCCCCG
TTGGCCCGCTAGTGGACTACAGCACCAAAGCCAGAAACCAGACCTGCAAT
ATCATCGATTACGGGGCTGTCGCAGATGGTAAAACGGATATATCGCAGGC
TCTACTTGATGCCTGGGGAAACTGTTCCGTGGGGGGACTGGTCTACATCC
CACCCGGTAACTACTCGCTGGCCGAGGACATTGAGCTCAAGCACGGCCAG
TCCTCTGCAATTCAGCTAGACGGTGTGGTTATGCGCGGACACCGCGGCTC
GTACCAGATGATCCTTATCCGTGACTGCAATGACTTCGAATTTTTCAGCG
GCAATTCCCGCGGGGCCATTCAGGGCTTTGGTTACGAATATCTGCAGAAT
GACACCTACGGCGAGAGACTCTTGCGCATCCAAGAGGTTAACAATTTCTC
GGTGCATGGATTCGCACTAATTGACTCGCCTTCCTACTACATTGTTTTCG
ATACGGTCACCAGTGGGGAGGTATATAACATCTTGATCCGCGGCGTGACA
TCTGTGGGAGCGACAGATGCTATCGACGTATGGGGAGAGAACATGTGGTT
CCATGACATTGAAGTGAGCAACGGCGATGAATGTGTCACCGTCAAGTCTC
CGGCGCACAATTATCTGATTGAGAACATCTACTGCAATCTCAGTGGTGGG
ACCGCGATTGGATCCTTAGGCACGGGCACCAACATTTCCGACATCCACTA
CCGCAATCTCTACATGAACCAAGCAGATGCGTGCTTTCTGAAATCCAACA
ATGGGGATGGGATTGTCAAAAATATCATCTGGGAGAATGTCATAGTCCAC
GGCGGTCCGTACCCGCTGGCCATAGACGAGGCCTGGGGAGATGATCGAGG
ATCCGTAGGAGTTCAAGTGTCCAACCTCACATTCCGAAACTGGCACGGAG
AATCCGTGAGCGCCTCACGCCCAGTCATCCGCCTACAATGTGACTCCGAC
GTCCCGTGCTACGATATTACCATCGAAAACGTGAACCTGTGGGCCAACGA
CAGCAACTATGTGGTTTGGCAGTGCGAGAACGCCTATGGAGATGGGGCCT
GTCTCTCTAGTGCAGAGGGAACAAAAGATTTGGAAACCTTTACCAGCAAA
CAAACTATAACTGCCACCCCGTCCTATGCTGCGCCAACCATGGCAGCTGA
CTTCACCTTTAATCTGCCATCAACGAGCCCTTTTACTATTCCTCCCATGC
CGACAAGTTTCTACCCCGGTGCTACTCCCATCTCAACCCTCTTGCATCTA
CATGGTGCGGGCGGTCTCCCATCAGCATCTCCCATTTCGCATCATCGACG
ACACCAATGAATGCGCGCCAGCATTCTACCGTTGACTCTGTTCTTGGCCA
CTCTGGCCGGGGCGCAACTCTCCGGCCCCGTTGGCCCGCTAGTGGACTAC
AGCACCAAAGCCAGAAACCAGACCTGCAATATCATCGATTACGGGGCTGT
CGCAGATGGTAAAACGGATATATCGCAGGCTCTACTTGATGCCTGGGGAA
ACTGTTCCGTGGGGGGACTGGTCTACATCCCACCCGGTAACTACTCGCTG
GCCGAGGACATTGAGCTCAAGCACGGCCAGTCCTCTGCAATTCAGCTAGA
CGGTGTGGTTATGCGCGGACACCGCGGCTCGTACCAGATGATCCTTATCC
GTGACTGCAATGACTTCGAATTTTTCAGCGGCAATTCCCGCGGGGCCATT
CAGGGCTTTGGTTACGAATATCTGCAGAATGACACCTACGGCGAGAGACT
CTTGCGCATCCAAGAGGTTAACAATTTCTCGGTGCATGGATTCGCACTAA
TTGACTCGCCTTCCTACTACATTGTTTTCGATACGGTCACCAGTGGGGAG
GTATATAACATCTTGATCCGCGGCGTGACATCTGTGGGAGCGACAGATGC
TATCGACGTATGGGGAGAGAACATGTGGTTCCATGACATTGAAGTGAGCA
ACGGCGATGAATGTGTCACCGTCAAGTCTCCGGCGCACAATTATCTGATT
GAGAACATCTACTGCAATCTCAGTGGTGGGACCGCGATTGGATCCTTAGG
CACGGGCACCAACATTTCCGACATCCACTACCGCAATCTCTACATGAACC
AAGCAGATGCGTGCTTTCTGAAATCCAACAATGGGGATGGGATTGTCAAA
AATATCATCTGGGAGAATGTCATAGTCCACGGCGGTCCGTACCCGCTGGC
CATAGACGAGGCCTGGGGAGATGATCGAGGATCCGTAGGAGTTCAAGTGT
CCAACCTCACATTCCGAAACTGGCACGGAGAATCCGTGAGCGCCTCACGC
CCAGTCATCCGCCTACAATGTGACTCCGACGTCCCGTGCTACGATATTAC
CATCGAAAACGTGAACCTGTGGGCCAACGACAGCAACTATGTGGTTTGGC
AGTGCGAGAACGCCTATGGAGATGGGGCCTGTCTCTCTAGTGCAGAGGGA
ACAAAAGATTTGGAAACCTTTACCAGCAAACAAACTATAACTGCCACCCC
GTCCTATGCTGCGCCAACCATGGCAGCTGACTTCACCTTTAATCTGCCAT
CAACGAGCCCTTTTACTATTCCTCCCATGCCGACAAGTTTCTACCCCGGT
GCTACTCCCATCTCAACCCTCTTGCATCTACATGGTGCGGGCGGTCTCCC
ATCAGCATCTCCCATTTCGCATCATCGACGACACCAATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
M747DRAFT_359088M747DRAFT_359088Aspergillus niger ATCC 13496gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_359088-T1.exon1M747DRAFT_359088-T1.exon1Aspergillus niger ATCC 13496exon
M747DRAFT_359088-T1.exon2M747DRAFT_359088-T1.exon2Aspergillus niger ATCC 13496exon
M747DRAFT_359088-T1.exon3M747DRAFT_359088-T1.exon3Aspergillus niger ATCC 13496exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_359088-T1.cdsM747DRAFT_359088-T1.cdsAspergillus niger ATCC 13496CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_359088-T1M747DRAFT_359088-T1-proteinAspergillus niger ATCC 13496polypeptide


Properties
Property NameValue
NoteSECRETED:SignalP(1-18)
NoteCAZy:GH28
DBxrefInterPro:IPR011050
DBxrefInterPro:IPR000743
DBxrefInterPro:IPR012334
DBxrefPFAM:PF12708
DBxrefPFAM:PF00295
ProductRGase C
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851941.1supercontigKZ851941.1:166384..167871 +
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