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Sequences
The following sequences are available for this feature:
mRNA from alignment at KZ851941.1:166384..167871+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >M747DRAFT_359088-T1 ID=M747DRAFT_359088-T1|Name=M747DRAFT_359088-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1488bp|location=Sequence derived from alignment at KZ851941.1:166384..167871+ (Aspergillus niger ATCC 13496) ATGCGCGCCAGCATTCTACCGTTGACTCTGTTCTTGGCCACTCTGGCCGG
GGCGCAACTCTCCGGCCCCGTTGGCCCGCTAGTGGACTACAGCACCAAAG
CCAGAAACCAGACCTGCAATATCATCGATTACGGGGCTGTCGCAGATGGT
AAAACGGATATATCGCAGGCTCTACTTGATGCCTGGGGAAACTGTTCCGT
GGGGGGACTGGTCTACATCCCACCCGGTAACTACTCGCTGGCCGAGGACA
TTGAGCTCAAGCACGGCCAGTCCTCTGCAATTCAGCTAGACGGTGTGGTT
ATGCGCGGACACCGCGGCTCGTACCAGATGATCCTTATCCGTGACTGCAA
TGACTTCGAATTTTTCAGCGGCAATTCCCGCGGGGCCATTCAGGGCTTTG
GTTACGAATATCTGCAGAATGACACCTACGGCGAGAGACTCTTGCGCATC
CAAGAGGTTAACAATTTCTCGGTGCATGGATTCGCACTAATTGACTCGCC
TTCCTACTACATTGTTTTCGATACGGTCACCAGTGGGGAGGTATATAACA
TCTTGATCCGCGGCGTGACATCTGTGGGAGCGACAGATGCTATCGACGTA
TGGGGAGAGAACATGTGGTTCCATGACATTGAAGTGAGCAACGGCGATGA
ATGTGTCACCGTCAAGTCTCCGGCGCACAATTATCTGATTGAGAACATCT
ACTGCAATCTCAGTGGTGGGACCGCGATTGGATCCTTAGGCACGGGCACC
AACATTTCCGACATCCACTACCGCAATCTCTACATGAACCAAGCAGATGC
GTGCTTTCTGAAATCCAACAATGGGGATGGGATTGTCAAAAATATCATCT
GGGAGAATGTCATAGTCCACGGCGGTCCGTACCCGCTGGCCATAGACGAG
GCCTGGGGAGATGATCGAGGATCCGTAGGAGTTCAAGTGTCCAACCTCAC
ATTCCGAGTAAGTACACGATAATATTTCAATGTCTTAAGAGATCCTAATT
TGCTTTGTTATATAGAACTGGCACGGAGAATCCGTGAGCGCCTCACGCCC
AGTCATCCGCCTACAATGTGACTCCGACGTCCCGTGCTACGATATTACCA
TCGAAAACGTGAACCTGTGGGCCAACGACAGCAACTATGTGGTTTGGCAG
TGCGAGAACGCCTATGGAGATGGGGCCTGTCTCTCTAGTGCAGAGGGAAC
AAAAGATTTGGAAACCTTTACCAGCAAACAAACTATAACTGCCACCCCGT
ATGTGACTTGTCCATTCTTTTCCACGGAAATTGCTAACAAGAAGATAGGT
CCTATGCTGCGCCAACCATGGCAGCTGACTTCACCTTTAATCTGCCATCA
ACGAGCCCTTTTACTATTCCTCCCATGCCGACAAGTTTCTACCCCGGTGC
TACTCCCATCTCAACCCTCTTGCATCTACATGGTGCGGGCGGTCTCCCAT
CAGCATCTCCCATTTCGCATCATCGACGACACCAATGA back to topCoding sequence (CDS) from alignment at KZ851941.1:166384..167871+ >M747DRAFT_359088-T1 ID=M747DRAFT_359088-T1|Name=M747DRAFT_359088-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=4140bp|location=Sequence derived from alignment at KZ851941.1:166384..167871+ (Aspergillus niger ATCC 13496) ATGCGCGCCAGCATTCTACCGTTGACTCTGTTCTTGGCCACTCTGGCCGG GGCGCAACTCTCCGGCCCCGTTGGCCCGCTAGTGGACTACAGCACCAAAG CCAGAAACCAGACCTGCAATATCATCGATTACGGGGCTGTCGCAGATGGT AAAACGGATATATCGCAGGCTCTACTTGATGCCTGGGGAAACTGTTCCGT GGGGGGACTGGTCTACATCCCACCCGGTAACTACTCGCTGGCCGAGGACA TTGAGCTCAAGCACGGCCAGTCCTCTGCAATTCAGCTAGACGGTGTGGTT ATGCGCGGACACCGCGGCTCGTACCAGATGATCCTTATCCGTGACTGCAA TGACTTCGAATTTTTCAGCGGCAATTCCCGCGGGGCCATTCAGGGCTTTG GTTACGAATATCTGCAGAATGACACCTACGGCGAGAGACTCTTGCGCATC CAAGAGGTTAACAATTTCTCGGTGCATGGATTCGCACTAATTGACTCGCC TTCCTACTACATTGTTTTCGATACGGTCACCAGTGGGGAGGTATATAACA TCTTGATCCGCGGCGTGACATCTGTGGGAGCGACAGATGCTATCGACGTA TGGGGAGAGAACATGTGGTTCCATGACATTGAAGTGAGCAACGGCGATGA ATGTGTCACCGTCAAGTCTCCGGCGCACAATTATCTGATTGAGAACATCT ACTGCAATCTCAGTGGTGGGACCGCGATTGGATCCTTAGGCACGGGCACC AACATTTCCGACATCCACTACCGCAATCTCTACATGAACCAAGCAGATGC GTGCTTTCTGAAATCCAACAATGGGGATGGGATTGTCAAAAATATCATCT GGGAGAATGTCATAGTCCACGGCGGTCCGTACCCGCTGGCCATAGACGAG GCCTGGGGAGATGATCGAGGATCCGTAGGAGTTCAAGTGTCCAACCTCAC ATTCCGAAACTGGCACGGAGAATCCGTGAGCGCCTCACGCCCAGTCATCC GCCTACAATGTGACTCCGACGTCCCGTGCTACGATATTACCATCGAAAAC GTGAACCTGTGGGCCAACGACAGCAACTATGTGGTTTGGCAGTGCGAGAA CGCCTATGGAGATGGGGCCTGTCTCTCTAGTGCAGAGGGAACAAAAGATT TGGAAACCTTTACCAGCAAACAAACTATAACTGCCACCCCGTCCTATGCT GCGCCAACCATGGCAGCTGACTTCACCTTTAATCTGCCATCAACGAGCCC TTTTACTATTCCTCCCATGCCGACAAGTTTCTACCCCGGTGCTACTCCCA TCTCAACCCTCTTGCATCTACATGGTGCGGGCGGTCTCCCATCAGCATCT CCCATTTCGCATCATCGACGACACCAATGAATGCGCGCCAGCATTCTACC GTTGACTCTGTTCTTGGCCACTCTGGCCGGGGCGCAACTCTCCGGCCCCG TTGGCCCGCTAGTGGACTACAGCACCAAAGCCAGAAACCAGACCTGCAAT ATCATCGATTACGGGGCTGTCGCAGATGGTAAAACGGATATATCGCAGGC TCTACTTGATGCCTGGGGAAACTGTTCCGTGGGGGGACTGGTCTACATCC CACCCGGTAACTACTCGCTGGCCGAGGACATTGAGCTCAAGCACGGCCAG TCCTCTGCAATTCAGCTAGACGGTGTGGTTATGCGCGGACACCGCGGCTC GTACCAGATGATCCTTATCCGTGACTGCAATGACTTCGAATTTTTCAGCG GCAATTCCCGCGGGGCCATTCAGGGCTTTGGTTACGAATATCTGCAGAAT GACACCTACGGCGAGAGACTCTTGCGCATCCAAGAGGTTAACAATTTCTC GGTGCATGGATTCGCACTAATTGACTCGCCTTCCTACTACATTGTTTTCG ATACGGTCACCAGTGGGGAGGTATATAACATCTTGATCCGCGGCGTGACA TCTGTGGGAGCGACAGATGCTATCGACGTATGGGGAGAGAACATGTGGTT CCATGACATTGAAGTGAGCAACGGCGATGAATGTGTCACCGTCAAGTCTC CGGCGCACAATTATCTGATTGAGAACATCTACTGCAATCTCAGTGGTGGG ACCGCGATTGGATCCTTAGGCACGGGCACCAACATTTCCGACATCCACTA CCGCAATCTCTACATGAACCAAGCAGATGCGTGCTTTCTGAAATCCAACA ATGGGGATGGGATTGTCAAAAATATCATCTGGGAGAATGTCATAGTCCAC GGCGGTCCGTACCCGCTGGCCATAGACGAGGCCTGGGGAGATGATCGAGG ATCCGTAGGAGTTCAAGTGTCCAACCTCACATTCCGAAACTGGCACGGAG AATCCGTGAGCGCCTCACGCCCAGTCATCCGCCTACAATGTGACTCCGAC GTCCCGTGCTACGATATTACCATCGAAAACGTGAACCTGTGGGCCAACGA CAGCAACTATGTGGTTTGGCAGTGCGAGAACGCCTATGGAGATGGGGCCT GTCTCTCTAGTGCAGAGGGAACAAAAGATTTGGAAACCTTTACCAGCAAA CAAACTATAACTGCCACCCCGTCCTATGCTGCGCCAACCATGGCAGCTGA CTTCACCTTTAATCTGCCATCAACGAGCCCTTTTACTATTCCTCCCATGC CGACAAGTTTCTACCCCGGTGCTACTCCCATCTCAACCCTCTTGCATCTA CATGGTGCGGGCGGTCTCCCATCAGCATCTCCCATTTCGCATCATCGACG ACACCAATGAATGCGCGCCAGCATTCTACCGTTGACTCTGTTCTTGGCCA CTCTGGCCGGGGCGCAACTCTCCGGCCCCGTTGGCCCGCTAGTGGACTAC AGCACCAAAGCCAGAAACCAGACCTGCAATATCATCGATTACGGGGCTGT CGCAGATGGTAAAACGGATATATCGCAGGCTCTACTTGATGCCTGGGGAA ACTGTTCCGTGGGGGGACTGGTCTACATCCCACCCGGTAACTACTCGCTG GCCGAGGACATTGAGCTCAAGCACGGCCAGTCCTCTGCAATTCAGCTAGA CGGTGTGGTTATGCGCGGACACCGCGGCTCGTACCAGATGATCCTTATCC GTGACTGCAATGACTTCGAATTTTTCAGCGGCAATTCCCGCGGGGCCATT CAGGGCTTTGGTTACGAATATCTGCAGAATGACACCTACGGCGAGAGACT CTTGCGCATCCAAGAGGTTAACAATTTCTCGGTGCATGGATTCGCACTAA TTGACTCGCCTTCCTACTACATTGTTTTCGATACGGTCACCAGTGGGGAG GTATATAACATCTTGATCCGCGGCGTGACATCTGTGGGAGCGACAGATGC TATCGACGTATGGGGAGAGAACATGTGGTTCCATGACATTGAAGTGAGCA ACGGCGATGAATGTGTCACCGTCAAGTCTCCGGCGCACAATTATCTGATT GAGAACATCTACTGCAATCTCAGTGGTGGGACCGCGATTGGATCCTTAGG CACGGGCACCAACATTTCCGACATCCACTACCGCAATCTCTACATGAACC AAGCAGATGCGTGCTTTCTGAAATCCAACAATGGGGATGGGATTGTCAAA AATATCATCTGGGAGAATGTCATAGTCCACGGCGGTCCGTACCCGCTGGC CATAGACGAGGCCTGGGGAGATGATCGAGGATCCGTAGGAGTTCAAGTGT CCAACCTCACATTCCGAAACTGGCACGGAGAATCCGTGAGCGCCTCACGC CCAGTCATCCGCCTACAATGTGACTCCGACGTCCCGTGCTACGATATTAC CATCGAAAACGTGAACCTGTGGGCCAACGACAGCAACTATGTGGTTTGGC AGTGCGAGAACGCCTATGGAGATGGGGCCTGTCTCTCTAGTGCAGAGGGA ACAAAAGATTTGGAAACCTTTACCAGCAAACAAACTATAACTGCCACCCC GTCCTATGCTGCGCCAACCATGGCAGCTGACTTCACCTTTAATCTGCCAT CAACGAGCCCTTTTACTATTCCTCCCATGCCGACAAGTTTCTACCCCGGT GCTACTCCCATCTCAACCCTCTTGCATCTACATGGTGCGGGCGGTCTCCC ATCAGCATCTCCCATTTCGCATCATCGACGACACCAATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
Term | Definition |
GO:0005975 | carbohydrate metabolic process |
Vocabulary: Molecular Function
Term | Definition |
GO:0004650 | polygalacturonase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
Property Name | Value |
Note | SECRETED:SignalP(1-18) |
Note | CAZy:GH28 |
DBxref | InterPro:IPR011050 |
DBxref | InterPro:IPR000743 |
DBxref | InterPro:IPR012334 |
DBxref | PFAM:PF12708 |
DBxref | PFAM:PF00295 |
Product | RGase C |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
KZ851941.1 | supercontig | KZ851941.1:166384..167871 + |
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