You are here

Home

M747DRAFT_366993-T1, M747DRAFT_366993-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_366993-T1
Unique NameM747DRAFT_366993-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851901.1:842736..843877+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_366993-T1 ID=M747DRAFT_366993-T1|Name=M747DRAFT_366993-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1142bp|location=Sequence derived from alignment at KZ851901.1:842736..843877+ (Aspergillus niger ATCC 13496)
CGCCGACTGCCGCATTGATTGTTGTCAGTTGCTGTCCAGAAACCCCCAAC
CGCTCCCTCACCTCAGCTTCAAGTCGCCTTTACTTCGTCTTTCACCCAAC
GTACCATCGACTATCACCATCATGGCGAAGAAGGCATTGGCCAAGGACCA
GATTGTGAAGCTCATTGTGGGTGCCGGTCAGGCCAGTCCCAGTCCTCCCG
TCGGTCCGGCCCTGGGTAGTAAGGGTGTGAAGAGTATGGACTTCTGTAAG
GTGAGCTGAAAGAACACTCCATTGACAGCTTTAAATCGGATCCGTCATTT
GCAAGACGTCCAATTGGAGCTATCTGAAGTAGAAGAACGCGCAAGGCTCA
TATGGTTTACTGTAGGAATTCAACGCCAGAACTGCACACATCAACACCGG
TGTACCCATTCCTGCGCGTGTCACTGTCCGACCCGACCGTTCCTTCACCT
TCGACCTCCGTACTCCCACTACCACCTATCTGCTGTTGCAAGCGGCCAAC
GTGGAACCTCGCAAGAATCGCATCCGTGGCGCCCAGAACCCGGGCCATGA
GTTCATCGGCAAGATATCCCTCAAGCATGTCTACGAAATCGCCAAGATCA
AGCACTCCGAGACGCGACTGTCTGGACTGAGCCTGCAGGGATTGTGCAAG
AGTGTCATTGCCCAGGCCAAATCCGTCGGCATCCAGGTTGTACCATGAGA
TTATTGCGGAGCGGGCGATTGGTGATGTCGTTGTACACTATCTTGTGCCC
TTGCTCTCGTAAGGTTACTCCTCTTCTTCTCTTGGGCTTACGAAATTGGC
GTTATGTGGAACTGGGTTTGTTACCATCTGTATCATAGGCATTGCATGTT
GTATAGAGAGCGTTGGCTGGTGCCTCAAGCGATCACAAAGTGGATTTGAC
TTCCTGAACATGAAAAAAGGGTCCTGAGTATAACGGTGGGCGTAGTGTTG
CTGAATGGGCTATTTTGGGTTCCTGACCAGGACCTGCCGGTCTGCTGGTT
GTCACGGTACCCCTATACCAAGTAGTATCGAGTCGGGTGGAAGCCCACTC
GTCATCAATAGCGACATACACACCTGTCTTTACCTACCAATCCATGCCAT
ATCCTTGCAAGGGCGGAGTTTCTGTTACTTTCAAGATCCAGC
back to top

Coding sequence (CDS) from alignment at KZ851901.1:842736..843877+

>M747DRAFT_366993-T1 ID=M747DRAFT_366993-T1|Name=M747DRAFT_366993-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=924bp|location=Sequence derived from alignment at KZ851901.1:842736..843877+ (Aspergillus niger ATCC 13496)
ATGGCGAAGAAGGCATTGGCCAAGGACCAGATTGTGAAGCTCATTGTGGG
TGCCGGTCAGGCCAGTCCCAGTCCTCCCGTCGGTCCGGCCCTGGGTAGTA
AGGGTGTGAAGAGTATGGACTTCTGTAAGGAATTCAACGCCAGAACTGCA
CACATCAACACCGGTGTACCCATTCCTGCGCGTGTCACTGTCCGACCCGA
CCGTTCCTTCACCTTCGACCTCCGTACTCCCACTACCACCTATCTGCTGT
TGCAAGCGGCCAACGTGGAACCTCGCAAGAATCGCATCCGTGGCGCCCAG
AACCCGGGCCATGAGTTCATCGGCAAGATATCCCTCAAGCATGTCTACGA
AATCGCCAAGATCAAGCACTCCGAGACGCGACTGTCTGGACTGAGCCTGC
AGGGATTGTGCAAGAGTGTCATTGCCCAGGCCAAATCCGTCGGCATCCAG
GTTGTACCATGAATGGCGAAGAAGGCATTGGCCAAGGACCAGATTGTGAA
GCTCATTGTGGGTGCCGGTCAGGCCAGTCCCAGTCCTCCCGTCGGTCCGG
CCCTGGGTAGTAAGGGTGTGAAGAGTATGGACTTCTGTAAGGAATTCAAC
GCCAGAACTGCACACATCAACACCGGTGTACCCATTCCTGCGCGTGTCAC
TGTCCGACCCGACCGTTCCTTCACCTTCGACCTCCGTACTCCCACTACCA
CCTATCTGCTGTTGCAAGCGGCCAACGTGGAACCTCGCAAGAATCGCATC
CGTGGCGCCCAGAACCCGGGCCATGAGTTCATCGGCAAGATATCCCTCAA
GCATGTCTACGAAATCGCCAAGATCAAGCACTCCGAGACGCGACTGTCTG
GACTGAGCCTGCAGGGATTGTGCAAGAGTGTCATTGCCCAGGCCAAATCC
GTCGGCATCCAGGTTGTACCATGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
M747DRAFT_366993M747DRAFT_366993Aspergillus niger ATCC 13496gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_366993-T1.utr5p1M747DRAFT_366993-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_366993-T1.exon1M747DRAFT_366993-T1.exon1Aspergillus niger ATCC 13496exon
M747DRAFT_366993-T1.exon2M747DRAFT_366993-T1.exon2Aspergillus niger ATCC 13496exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_366993-T1.cdsM747DRAFT_366993-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_366993-T1.utr3p1M747DRAFT_366993-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_366993-T1M747DRAFT_366993-T1-proteinAspergillus niger ATCC 13496polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09265BG5
DBxrefInterPro:IPR036769
DBxrefInterPro:IPR036796
DBxrefInterPro:IPR020783
DBxrefInterPro:IPR020784
DBxrefInterPro:IPR006519
DBxrefInterPro:IPR000911
DBxrefPFAM:PF03946
DBxrefPFAM:PF00298
Productmitochondrial 54S ribosomal protein YmL19
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851901.1supercontigKZ851901.1:842736..843877 +
Powered by Drupal