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Sequences
The following sequences are available for this feature:
mRNA from alignment at KZ851923.1:297603..299052- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >M747DRAFT_371874-T1 ID=M747DRAFT_371874-T1|Name=M747DRAFT_371874-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1450bp|location=Sequence derived from alignment at KZ851923.1:297603..299052- (Aspergillus niger ATCC 13496) CAACAGCATTTTTTTCAGCGCATTCGAAACATAATCCTCCTCACTGACGC
ACCTGCGAGTATACCGATTCCATATATTACCTGAATTGACTCTGTGTATA
CACAAGAGCCTCTTGCTTTGTCGCAGAGGCTTCCAGCAACATGCCCATCA
ACCAACCATCAAATCAGATTAAATTTACCAACGTATCAGTCGTCAGGCTA
AAAAAGGGTACGTATTGATATGCATGTGTGGCCCTTCATTTGCGATCGTC
TTGCGTGGCATGTCTGTCAATAATGTGGGGAGATCATGCGCAAATTCAGC
GTAGAAAGAAAAACTGCCTGCGAAACTTCCAGTCGGCCCCGCAACCCCGC
TAACCGTTTCACCAACAGGTAAAAAGCGCTTCGAACTCGCCTGCTACAAG
AACAAACTCCTCGAGTACCGCTCCGGAGCAGAGAAGGATCTCGACAATGT
CCTCCAAGTCCCCACGATCTTCCTGTCGGTTTCCAAAGCGCAAACAGCCC
CATCCGCCGAGTTAACAAAGGCCTTCGGCGCCGACACGCCTGCAGATGAG
ATCCGGCAAGAAATTCTACGAAAGGGTGAAGTGCAAGTTGGCGAGCGTGA
GCGCAAGGAAATCATCGAGCGCGTGGAGAAGGAGGTGTTGGATATCGTAT
CAGGACGGCTTGTTGATCCTACGACGAAGCGAGTCTATACCCCCGGAATG
ATTTCCAAGGCCTTGGACCAGCTCAGCTCGGCTAGTGGTCAACAGCAGTC
GCAAACGTCTGGCAATGGGGAGACTAATGGGGACGACAGCGAGGAGAGCC
GCCCGAGGAAACCGCTCTGGACGGGTGTGACGGCCAACAAGTCGGCGAAG
AGTCAAGCGCTTGAAGCTATGAAGGCGCTTATTGCATGGCAACCTATCCC
TGTGATGCGGGCGCGGATGCGCCTCCGTGTCACCTGTCCTGTGTCACTGT
TGAAGCAGAGTGTTAAGGGTGGTGCGGCCGGTGGTGCTGCCGCGGGTGGT
AAAGAAAAGGAGGCGCCGTCCAAGAGCGGCTCCAAGTCGAACAAGAAGGG
TGGAAAGGGGTCCAAGAAAGCCCGTCAGCAGGAATCCGAGGATGAGGCAG
GTGGATCTGACGCAGAGTCCGCACCTGCCAAGGGTCCGAGCAATGTCAAG
GATAAGATCCTGAGCTATATCGAATCTATTGAGGCTCAGGAGGTTGTCGG
CGGAGACGAGTGGGAGATCATTGGCTTTGCTGAGCCGGGAGCTTTCAAGG
GATTGAATGAATTTGTGGGCAACGAGACCCGGGGCAGAGGACGTGTGGAG
GTGCTGGATATGACGGTGACCCATGAAGAGTAAGCCCCGCCGGGATTACT
TCTGGTGCAACCATGTACAGCCTGCTATGATTGATGACTAGGAAGGATAC
CAAAATTATGCCATAAATGTGACCATACTACAATATACTAGAATCCAAGC
back to topCoding sequence (CDS) from alignment at KZ851923.1:297603..299052- >M747DRAFT_371874-T1 ID=M747DRAFT_371874-T1|Name=M747DRAFT_371874-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=2064bp|location=Sequence derived from alignment at KZ851923.1:297603..299052- (Aspergillus niger ATCC 13496) GTAAAAAGCGCTTCGAACTCGCCTGCTACAAGAACAAACTCCTCGAGTAC CGCTCCGGAGCAGAGAAGGATCTCGACAATGTCCTCCAAGTCCCCACGAT CTTCCTGTCGGTTTCCAAAGCGCAAACAGCCCCATCCGCCGAGTTAACAA AGGCCTTCGGCGCCGACACGCCTGCAGATGAGATCCGGCAAGAAATTCTA CGAAAGGGTGAAGTGCAAGTTGGCGAGCGTGAGCGCAAGGAAATCATCGA GCGCGTGGAGAAGGAGGTGTTGGATATCGTATCAGGACGGCTTGTTGATC CTACGACGAAGCGAGTCTATACCCCCGGAATGATTTCCAAGGCCTTGGAC CAGCTCAGCTCGGCTAGTGGTCAACAGCAGTCGCAAACGTCTGGCAATGG GGAGACTAATGGGGACGACAGCGAGGAGAGCCGCCCGAGGAAACCGCTCT GGACGGGTGTGACGGCCAACAAGTCGGCGAAGAGTCAAGCGCTTGAAGCT ATGAAGGCGCTTATTGCATGGCAACCTATCCCTGTGATGCGGGCGCGGAT GCGCCTCCGTGTCACCTGTCCTGTGTCACTGTTGAAGCAGAGTGTTAAGG GTGGTGCGGCCGGTGGTGCTGCCGCGGGTGGTAAAGAAAAGGAGGCGCCG TCCAAGAGCGGCTCCAAGTCGAACAAGAAGGGTGGAAAGGGGTCCAAGAA AGCCCGTCAGCAGGAATCCGAGGATGAGGCAGGTGGATCTGACGCAGAGT CCGCACCTGCCAAGGGTCCGAGCAATGTCAAGGATAAGATCCTGAGCTAT ATCGAATCTATTGAGGCTCAGGAGGTTGTCGGCGGAGACGAGTGGGAGAT CATTGGCTTTGCTGAGCCGGGAGCTTTCAAGGGATTGAATGAATTTGTGG GCAACGAGACCCGGGGCAGAGGACGTGTGGAGGTGCTGGATATGACGGTG ACCCATGAAGAGTAAATGCCCATCAACCAACCATCAAATCAGATTAAATT TACCAACGTATCAGTCGTCAGGCTAAAAAAGGGTAAAAAGCGCTTCGAAC TCGCCTGCTACAAGAACAAACTCCTCGAGTACCGCTCCGGAGCAGAGAAG GATCTCGACAATGTCCTCCAAGTCCCCACGATCTTCCTGTCGGTTTCCAA AGCGCAAACAGCCCCATCCGCCGAGTTAACAAAGGCCTTCGGCGCCGACA CGCCTGCAGATGAGATCCGGCAAGAAATTCTACGAAAGGGTGAAGTGCAA GTTGGCGAGCGTGAGCGCAAGGAAATCATCGAGCGCGTGGAGAAGGAGGT GTTGGATATCGTATCAGGACGGCTTGTTGATCCTACGACGAAGCGAGTCT ATACCCCCGGAATGATTTCCAAGGCCTTGGACCAGCTCAGCTCGGCTAGT GGTCAACAGCAGTCGCAAACGTCTGGCAATGGGGAGACTAATGGGGACGA CAGCGAGGAGAGCCGCCCGAGGAAACCGCTCTGGACGGGTGTGACGGCCA ACAAGTCGGCGAAGAGTCAAGCGCTTGAAGCTATGAAGGCGCTTATTGCA TGGCAACCTATCCCTGTGATGCGGGCGCGGATGCGCCTCCGTGTCACCTG TCCTGTGTCACTGTTGAAGCAGAGTGTTAAGGGTGGTGCGGCCGGTGGTG CTGCCGCGGGTGGTAAAGAAAAGGAGGCGCCGTCCAAGAGCGGCTCCAAG TCGAACAAGAAGGGTGGAAAGGGGTCCAAGAAAGCCCGTCAGCAGGAATC CGAGGATGAGGCAGGTGGATCTGACGCAGAGTCCGCACCTGCCAAGGGTC CGAGCAATGTCAAGGATAAGATCCTGAGCTATATCGAATCTATTGAGGCT CAGGAGGTTGTCGGCGGAGACGAGTGGGAGATCATTGGCTTTGCTGAGCC GGGAGCTTTCAAGGGATTGAATGAATTTGTGGGCAACGAGACCCGGGGCA GAGGACGTGTGGAGGTGCTGGATATGACGGTGACCCATGAAGAGTAAATG CCCATCAACCAACCATCAAATCAGATTAAATTTACCAACGTATCAGTCGT CAGGCTAAAAAAGG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
Term | Definition |
GO:0042256 | mature ribosome assembly |
GO:0042254 | ribosome biogenesis |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Properties
Property Name | Value |
Note | BUSCO:EOG0926400M |
DBxref | InterPro:IPR019783 |
DBxref | InterPro:IPR036786 |
DBxref | InterPro:IPR002140 |
DBxref | InterPro:IPR018978 |
DBxref | InterPro:IPR037188 |
DBxref | PFAM:PF09377 |
DBxref | PFAM:PF01172 |
Product | Shwachman-Bodian-diamond syndrome protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
KZ851923.1 | supercontig | KZ851923.1:297603..299052 - |
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