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Sequences
The following sequences are available for this feature:
mRNA from alignment at KZ851923.1:297603..299052- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >M747DRAFT_371874-T1 ID=M747DRAFT_371874-T1|Name=M747DRAFT_371874-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1450bp|location=Sequence derived from alignment at KZ851923.1:297603..299052- (Aspergillus niger ATCC 13496)
CAACAGCATTTTTTTCAGCGCATTCGAAACATAATCCTCCTCACTGACGC
ACCTGCGAGTATACCGATTCCATATATTACCTGAATTGACTCTGTGTATA
CACAAGAGCCTCTTGCTTTGTCGCAGAGGCTTCCAGCAACATGCCCATCA
ACCAACCATCAAATCAGATTAAATTTACCAACGTATCAGTCGTCAGGCTA
AAAAAGGGTACGTATTGATATGCATGTGTGGCCCTTCATTTGCGATCGTC
TTGCGTGGCATGTCTGTCAATAATGTGGGGAGATCATGCGCAAATTCAGC
GTAGAAAGAAAAACTGCCTGCGAAACTTCCAGTCGGCCCCGCAACCCCGC
TAACCGTTTCACCAACAGGTAAAAAGCGCTTCGAACTCGCCTGCTACAAG
AACAAACTCCTCGAGTACCGCTCCGGAGCAGAGAAGGATCTCGACAATGT
CCTCCAAGTCCCCACGATCTTCCTGTCGGTTTCCAAAGCGCAAACAGCCC
CATCCGCCGAGTTAACAAAGGCCTTCGGCGCCGACACGCCTGCAGATGAG
ATCCGGCAAGAAATTCTACGAAAGGGTGAAGTGCAAGTTGGCGAGCGTGA
GCGCAAGGAAATCATCGAGCGCGTGGAGAAGGAGGTGTTGGATATCGTAT
CAGGACGGCTTGTTGATCCTACGACGAAGCGAGTCTATACCCCCGGAATG
ATTTCCAAGGCCTTGGACCAGCTCAGCTCGGCTAGTGGTCAACAGCAGTC
GCAAACGTCTGGCAATGGGGAGACTAATGGGGACGACAGCGAGGAGAGCC
GCCCGAGGAAACCGCTCTGGACGGGTGTGACGGCCAACAAGTCGGCGAAG
AGTCAAGCGCTTGAAGCTATGAAGGCGCTTATTGCATGGCAACCTATCCC
TGTGATGCGGGCGCGGATGCGCCTCCGTGTCACCTGTCCTGTGTCACTGT
TGAAGCAGAGTGTTAAGGGTGGTGCGGCCGGTGGTGCTGCCGCGGGTGGT
AAAGAAAAGGAGGCGCCGTCCAAGAGCGGCTCCAAGTCGAACAAGAAGGG
TGGAAAGGGGTCCAAGAAAGCCCGTCAGCAGGAATCCGAGGATGAGGCAG
GTGGATCTGACGCAGAGTCCGCACCTGCCAAGGGTCCGAGCAATGTCAAG
GATAAGATCCTGAGCTATATCGAATCTATTGAGGCTCAGGAGGTTGTCGG
CGGAGACGAGTGGGAGATCATTGGCTTTGCTGAGCCGGGAGCTTTCAAGG
GATTGAATGAATTTGTGGGCAACGAGACCCGGGGCAGAGGACGTGTGGAG
GTGCTGGATATGACGGTGACCCATGAAGAGTAAGCCCCGCCGGGATTACT
TCTGGTGCAACCATGTACAGCCTGCTATGATTGATGACTAGGAAGGATAC
CAAAATTATGCCATAAATGTGACCATACTACAATATACTAGAATCCAAGC
back to topCoding sequence (CDS) from alignment at KZ851923.1:297603..299052- >M747DRAFT_371874-T1 ID=M747DRAFT_371874-T1|Name=M747DRAFT_371874-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=2064bp|location=Sequence derived from alignment at KZ851923.1:297603..299052- (Aspergillus niger ATCC 13496)
GTAAAAAGCGCTTCGAACTCGCCTGCTACAAGAACAAACTCCTCGAGTAC
CGCTCCGGAGCAGAGAAGGATCTCGACAATGTCCTCCAAGTCCCCACGAT
CTTCCTGTCGGTTTCCAAAGCGCAAACAGCCCCATCCGCCGAGTTAACAA
AGGCCTTCGGCGCCGACACGCCTGCAGATGAGATCCGGCAAGAAATTCTA
CGAAAGGGTGAAGTGCAAGTTGGCGAGCGTGAGCGCAAGGAAATCATCGA
GCGCGTGGAGAAGGAGGTGTTGGATATCGTATCAGGACGGCTTGTTGATC
CTACGACGAAGCGAGTCTATACCCCCGGAATGATTTCCAAGGCCTTGGAC
CAGCTCAGCTCGGCTAGTGGTCAACAGCAGTCGCAAACGTCTGGCAATGG
GGAGACTAATGGGGACGACAGCGAGGAGAGCCGCCCGAGGAAACCGCTCT
GGACGGGTGTGACGGCCAACAAGTCGGCGAAGAGTCAAGCGCTTGAAGCT
ATGAAGGCGCTTATTGCATGGCAACCTATCCCTGTGATGCGGGCGCGGAT
GCGCCTCCGTGTCACCTGTCCTGTGTCACTGTTGAAGCAGAGTGTTAAGG
GTGGTGCGGCCGGTGGTGCTGCCGCGGGTGGTAAAGAAAAGGAGGCGCCG
TCCAAGAGCGGCTCCAAGTCGAACAAGAAGGGTGGAAAGGGGTCCAAGAA
AGCCCGTCAGCAGGAATCCGAGGATGAGGCAGGTGGATCTGACGCAGAGT
CCGCACCTGCCAAGGGTCCGAGCAATGTCAAGGATAAGATCCTGAGCTAT
ATCGAATCTATTGAGGCTCAGGAGGTTGTCGGCGGAGACGAGTGGGAGAT
CATTGGCTTTGCTGAGCCGGGAGCTTTCAAGGGATTGAATGAATTTGTGG
GCAACGAGACCCGGGGCAGAGGACGTGTGGAGGTGCTGGATATGACGGTG
ACCCATGAAGAGTAAATGCCCATCAACCAACCATCAAATCAGATTAAATT
TACCAACGTATCAGTCGTCAGGCTAAAAAAGGGTAAAAAGCGCTTCGAAC
TCGCCTGCTACAAGAACAAACTCCTCGAGTACCGCTCCGGAGCAGAGAAG
GATCTCGACAATGTCCTCCAAGTCCCCACGATCTTCCTGTCGGTTTCCAA
AGCGCAAACAGCCCCATCCGCCGAGTTAACAAAGGCCTTCGGCGCCGACA
CGCCTGCAGATGAGATCCGGCAAGAAATTCTACGAAAGGGTGAAGTGCAA
GTTGGCGAGCGTGAGCGCAAGGAAATCATCGAGCGCGTGGAGAAGGAGGT
GTTGGATATCGTATCAGGACGGCTTGTTGATCCTACGACGAAGCGAGTCT
ATACCCCCGGAATGATTTCCAAGGCCTTGGACCAGCTCAGCTCGGCTAGT
GGTCAACAGCAGTCGCAAACGTCTGGCAATGGGGAGACTAATGGGGACGA
CAGCGAGGAGAGCCGCCCGAGGAAACCGCTCTGGACGGGTGTGACGGCCA
ACAAGTCGGCGAAGAGTCAAGCGCTTGAAGCTATGAAGGCGCTTATTGCA
TGGCAACCTATCCCTGTGATGCGGGCGCGGATGCGCCTCCGTGTCACCTG
TCCTGTGTCACTGTTGAAGCAGAGTGTTAAGGGTGGTGCGGCCGGTGGTG
CTGCCGCGGGTGGTAAAGAAAAGGAGGCGCCGTCCAAGAGCGGCTCCAAG
TCGAACAAGAAGGGTGGAAAGGGGTCCAAGAAAGCCCGTCAGCAGGAATC
CGAGGATGAGGCAGGTGGATCTGACGCAGAGTCCGCACCTGCCAAGGGTC
CGAGCAATGTCAAGGATAAGATCCTGAGCTATATCGAATCTATTGAGGCT
CAGGAGGTTGTCGGCGGAGACGAGTGGGAGATCATTGGCTTTGCTGAGCC
GGGAGCTTTCAAGGGATTGAATGAATTTGTGGGCAACGAGACCCGGGGCA
GAGGACGTGTGGAGGTGCTGGATATGACGGTGACCCATGAAGAGTAAATG
CCCATCAACCAACCATCAAATCAGATTAAATTTACCAACGTATCAGTCGT
CAGGCTAAAAAAGG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0042256 | mature ribosome assembly |
| GO:0042254 | ribosome biogenesis |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG0926400M |
| DBxref | InterPro:IPR019783 |
| DBxref | InterPro:IPR036786 |
| DBxref | InterPro:IPR002140 |
| DBxref | InterPro:IPR018978 |
| DBxref | InterPro:IPR037188 |
| DBxref | PFAM:PF09377 |
| DBxref | PFAM:PF01172 |
| Product | Shwachman-Bodian-diamond syndrome protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KZ851923.1 | supercontig | KZ851923.1:297603..299052 - |
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