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M747DRAFT_371874-T1, M747DRAFT_371874-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_371874-T1
Unique NameM747DRAFT_371874-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851923.1:297603..299052-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_371874-T1 ID=M747DRAFT_371874-T1|Name=M747DRAFT_371874-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1450bp|location=Sequence derived from alignment at KZ851923.1:297603..299052- (Aspergillus niger ATCC 13496)
CAACAGCATTTTTTTCAGCGCATTCGAAACATAATCCTCCTCACTGACGC ACCTGCGAGTATACCGATTCCATATATTACCTGAATTGACTCTGTGTATA CACAAGAGCCTCTTGCTTTGTCGCAGAGGCTTCCAGCAACATGCCCATCA ACCAACCATCAAATCAGATTAAATTTACCAACGTATCAGTCGTCAGGCTA AAAAAGGGTACGTATTGATATGCATGTGTGGCCCTTCATTTGCGATCGTC TTGCGTGGCATGTCTGTCAATAATGTGGGGAGATCATGCGCAAATTCAGC GTAGAAAGAAAAACTGCCTGCGAAACTTCCAGTCGGCCCCGCAACCCCGC TAACCGTTTCACCAACAGGTAAAAAGCGCTTCGAACTCGCCTGCTACAAG AACAAACTCCTCGAGTACCGCTCCGGAGCAGAGAAGGATCTCGACAATGT CCTCCAAGTCCCCACGATCTTCCTGTCGGTTTCCAAAGCGCAAACAGCCC CATCCGCCGAGTTAACAAAGGCCTTCGGCGCCGACACGCCTGCAGATGAG ATCCGGCAAGAAATTCTACGAAAGGGTGAAGTGCAAGTTGGCGAGCGTGA GCGCAAGGAAATCATCGAGCGCGTGGAGAAGGAGGTGTTGGATATCGTAT CAGGACGGCTTGTTGATCCTACGACGAAGCGAGTCTATACCCCCGGAATG ATTTCCAAGGCCTTGGACCAGCTCAGCTCGGCTAGTGGTCAACAGCAGTC GCAAACGTCTGGCAATGGGGAGACTAATGGGGACGACAGCGAGGAGAGCC GCCCGAGGAAACCGCTCTGGACGGGTGTGACGGCCAACAAGTCGGCGAAG AGTCAAGCGCTTGAAGCTATGAAGGCGCTTATTGCATGGCAACCTATCCC TGTGATGCGGGCGCGGATGCGCCTCCGTGTCACCTGTCCTGTGTCACTGT TGAAGCAGAGTGTTAAGGGTGGTGCGGCCGGTGGTGCTGCCGCGGGTGGT AAAGAAAAGGAGGCGCCGTCCAAGAGCGGCTCCAAGTCGAACAAGAAGGG TGGAAAGGGGTCCAAGAAAGCCCGTCAGCAGGAATCCGAGGATGAGGCAG GTGGATCTGACGCAGAGTCCGCACCTGCCAAGGGTCCGAGCAATGTCAAG GATAAGATCCTGAGCTATATCGAATCTATTGAGGCTCAGGAGGTTGTCGG CGGAGACGAGTGGGAGATCATTGGCTTTGCTGAGCCGGGAGCTTTCAAGG GATTGAATGAATTTGTGGGCAACGAGACCCGGGGCAGAGGACGTGTGGAG GTGCTGGATATGACGGTGACCCATGAAGAGTAAGCCCCGCCGGGATTACT TCTGGTGCAACCATGTACAGCCTGCTATGATTGATGACTAGGAAGGATAC CAAAATTATGCCATAAATGTGACCATACTACAATATACTAGAATCCAAGC
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Coding sequence (CDS) from alignment at KZ851923.1:297603..299052-

>M747DRAFT_371874-T1 ID=M747DRAFT_371874-T1|Name=M747DRAFT_371874-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=2064bp|location=Sequence derived from alignment at KZ851923.1:297603..299052- (Aspergillus niger ATCC 13496)
GTAAAAAGCGCTTCGAACTCGCCTGCTACAAGAACAAACTCCTCGAGTAC
CGCTCCGGAGCAGAGAAGGATCTCGACAATGTCCTCCAAGTCCCCACGAT
CTTCCTGTCGGTTTCCAAAGCGCAAACAGCCCCATCCGCCGAGTTAACAA
AGGCCTTCGGCGCCGACACGCCTGCAGATGAGATCCGGCAAGAAATTCTA
CGAAAGGGTGAAGTGCAAGTTGGCGAGCGTGAGCGCAAGGAAATCATCGA
GCGCGTGGAGAAGGAGGTGTTGGATATCGTATCAGGACGGCTTGTTGATC
CTACGACGAAGCGAGTCTATACCCCCGGAATGATTTCCAAGGCCTTGGAC
CAGCTCAGCTCGGCTAGTGGTCAACAGCAGTCGCAAACGTCTGGCAATGG
GGAGACTAATGGGGACGACAGCGAGGAGAGCCGCCCGAGGAAACCGCTCT
GGACGGGTGTGACGGCCAACAAGTCGGCGAAGAGTCAAGCGCTTGAAGCT
ATGAAGGCGCTTATTGCATGGCAACCTATCCCTGTGATGCGGGCGCGGAT
GCGCCTCCGTGTCACCTGTCCTGTGTCACTGTTGAAGCAGAGTGTTAAGG
GTGGTGCGGCCGGTGGTGCTGCCGCGGGTGGTAAAGAAAAGGAGGCGCCG
TCCAAGAGCGGCTCCAAGTCGAACAAGAAGGGTGGAAAGGGGTCCAAGAA
AGCCCGTCAGCAGGAATCCGAGGATGAGGCAGGTGGATCTGACGCAGAGT
CCGCACCTGCCAAGGGTCCGAGCAATGTCAAGGATAAGATCCTGAGCTAT
ATCGAATCTATTGAGGCTCAGGAGGTTGTCGGCGGAGACGAGTGGGAGAT
CATTGGCTTTGCTGAGCCGGGAGCTTTCAAGGGATTGAATGAATTTGTGG
GCAACGAGACCCGGGGCAGAGGACGTGTGGAGGTGCTGGATATGACGGTG
ACCCATGAAGAGTAAATGCCCATCAACCAACCATCAAATCAGATTAAATT
TACCAACGTATCAGTCGTCAGGCTAAAAAAGGGTAAAAAGCGCTTCGAAC
TCGCCTGCTACAAGAACAAACTCCTCGAGTACCGCTCCGGAGCAGAGAAG
GATCTCGACAATGTCCTCCAAGTCCCCACGATCTTCCTGTCGGTTTCCAA
AGCGCAAACAGCCCCATCCGCCGAGTTAACAAAGGCCTTCGGCGCCGACA
CGCCTGCAGATGAGATCCGGCAAGAAATTCTACGAAAGGGTGAAGTGCAA
GTTGGCGAGCGTGAGCGCAAGGAAATCATCGAGCGCGTGGAGAAGGAGGT
GTTGGATATCGTATCAGGACGGCTTGTTGATCCTACGACGAAGCGAGTCT
ATACCCCCGGAATGATTTCCAAGGCCTTGGACCAGCTCAGCTCGGCTAGT
GGTCAACAGCAGTCGCAAACGTCTGGCAATGGGGAGACTAATGGGGACGA
CAGCGAGGAGAGCCGCCCGAGGAAACCGCTCTGGACGGGTGTGACGGCCA
ACAAGTCGGCGAAGAGTCAAGCGCTTGAAGCTATGAAGGCGCTTATTGCA
TGGCAACCTATCCCTGTGATGCGGGCGCGGATGCGCCTCCGTGTCACCTG
TCCTGTGTCACTGTTGAAGCAGAGTGTTAAGGGTGGTGCGGCCGGTGGTG
CTGCCGCGGGTGGTAAAGAAAAGGAGGCGCCGTCCAAGAGCGGCTCCAAG
TCGAACAAGAAGGGTGGAAAGGGGTCCAAGAAAGCCCGTCAGCAGGAATC
CGAGGATGAGGCAGGTGGATCTGACGCAGAGTCCGCACCTGCCAAGGGTC
CGAGCAATGTCAAGGATAAGATCCTGAGCTATATCGAATCTATTGAGGCT
CAGGAGGTTGTCGGCGGAGACGAGTGGGAGATCATTGGCTTTGCTGAGCC
GGGAGCTTTCAAGGGATTGAATGAATTTGTGGGCAACGAGACCCGGGGCA
GAGGACGTGTGGAGGTGCTGGATATGACGGTGACCCATGAAGAGTAAATG
CCCATCAACCAACCATCAAATCAGATTAAATTTACCAACGTATCAGTCGT
CAGGCTAAAAAAGG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0042256mature ribosome assembly
GO:0042254ribosome biogenesis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
M747DRAFT_371874M747DRAFT_371874Aspergillus niger ATCC 13496gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_371874-T1M747DRAFT_371874-T1-proteinAspergillus niger ATCC 13496polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_371874-T1.cdsM747DRAFT_371874-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_371874-T1.utr3p1M747DRAFT_371874-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_371874-T1.exon2M747DRAFT_371874-T1.exon2Aspergillus niger ATCC 13496exon
M747DRAFT_371874-T1.exon1M747DRAFT_371874-T1.exon1Aspergillus niger ATCC 13496exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_371874-T1.utr5p1M747DRAFT_371874-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG0926400M
DBxrefInterPro:IPR019783
DBxrefInterPro:IPR036786
DBxrefInterPro:IPR002140
DBxrefInterPro:IPR018978
DBxrefInterPro:IPR037188
DBxrefPFAM:PF09377
DBxrefPFAM:PF01172
ProductShwachman-Bodian-diamond syndrome protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851923.1supercontigKZ851923.1:297603..299052 -