You are here

Home

M747DRAFT_38320-T1, M747DRAFT_38320-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_38320-T1
Unique NameM747DRAFT_38320-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851914.1:376862..378646+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_38320-T1 ID=M747DRAFT_38320-T1|Name=M747DRAFT_38320-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1785bp|location=Sequence derived from alignment at KZ851914.1:376862..378646+ (Aspergillus niger ATCC 13496)
TCCAATAATATCAGCAGTGGTGGTGGTGAGGACCTTTCGCGATAAGCGGC
ACGTGACCATCCCACGACCGCGATTTTTCTGCCGAAATTCAGTCCAACAT
TTAATCTTCATCTTTGAGCTTCATTCTCACCATCACAACTATATCCCCTC
CCTTCTCACTTTTCTCCCTGAGTATCTCTCCCGGATAACCGGTTACCGCC
CAAAATGCCTCCCCGGAAGCAGTGGATGTAGGTTGCCCCTCCACATTCAC
CTACTCAAATCTATGTACCCAACTAACCCACTCTCAGCGACAAGAAAACC
GCAACTACCTACCAACTCTTCCACCGTTCCCAACATGACCCTCTCATTCA
CGATCCCTCTGCTGACGACCGCGTCCTGCACCCTGTCTACGGTCCTCCCA
TCACCCCCAGTGAATCTTCCTCCGCCTCCAAGCACCGCGGCCAAAGTCTC
GCCGAGCTGAATCAAACCTTCGGCGATGCCGCGCGCAAAAACGAAGGTGA
AGCCGCCAACTACGGCATTTTCTACGATGACTCGCAATACGACTACATGC
AGCACTTGCGCGAGCTGGGCACCGGCGCCGGCGACGCTTACTTCGTCGAA
GCCAAGACGAAGGGCAAGGACAAGGGCAAAGGATTGAAGCTGGAGGATGC
TTTGAAACAGGTATCGCTGGATGATGGGCGAAGCGAGTTTGGTGGCACCG
AAAGCGTCTACAGCTATGACATGCGCTCGACGGCGTCTTCCTACGTGCGC
AAACCCACCTACCAGGACCAGCAGAACGTGCCCGATGCTATTGCGGGTTT
CCAGCCGGATATGGACCCGCGGTTGCGCGAAGCCTTGGAGGCGCTGGAGG
ACGAGGAGTACGTGGATGAAGATGACGAGGAGGACGTCTTCGGCCAGTTG
ACTACGCGGGCAGAGGAAATGGACCAGGGTGATTGGGAGGATACCATCTT
CGACGATGTCGAGGAAGAAGACGATGGATGGGAATCCGATGCGACAGAAA
AGGCCCCCGTGCAGATGGACACCACGGCCGCAAAGGCCCGCTACCAAGCC
TCAGAGCAGGAGGATAAGCCCGGCGAGCTTCCCGAACACAACGAGCCCGC
GCCCGACATGCACCCCGAAGACCAAGGCTGGATGCGCGAATTCGCCAAGT
TCAAGAAGGACGCCAAGTCTGGCAAAACAGCCGGCGTCCCCGCCGGTCCT
CCCAGCGTCGTCCCCTCCCATCAGGGCAGCACCCTCGCCTCGACCGTGTT
CACCGTCGGAGGCACCCCCATCCGCCGCAAGAAGCGCAAGGGCGCCCTCA
CCAACCCCTCCGCCTACTCCATGACTTCGTCCTCCCTCGCCCGTACAGAA
GGCCACCGTCTCCTCGACGACCGCTTCGAGCGCGTCGAAGCCCTCTACTC
CCTCGACGAGGAGGATGAGTTCGACGACAACATGTCCATGGTCAGTGGAA
TGACCGGTATGACCGGTATGACTGGTGTCTCGGGCATTTCGACTGCCTCG
TCTCAGGCACCGAGTCTCGTTGACGCGAACGGTGATGCCGTTCGTCCTTC
CCACAACTTCAACAACATCATGGATGATTTCCTTGCTGGGTGGGATGACA
AGACGAGTTCCCAGGCTAAGCGGAAGGGCGCAAAGGCGAAGCGCGGAAAG
AACGGTAATGAGGCGATTGGCATTCGCATGCTGGATGAGGTTCGGCAGGG
ATTGGGCCCTGCTAGGGTTACTGGGAAGGTGTCGGGCAGGGCGTAGTGGA
TATTCCTCACCTGAGTGAGTGAGTGAGTGGAATGT
back to top

Coding sequence (CDS) from alignment at KZ851914.1:376862..378646+

>M747DRAFT_38320-T1 ID=M747DRAFT_38320-T1|Name=M747DRAFT_38320-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=2964bp|location=Sequence derived from alignment at KZ851914.1:376862..378646+ (Aspergillus niger ATCC 13496)
ATGCCTCCCCGGAAGCAGTGGATCGACAAGAAAACCGCAACTACCTACCA
ACTCTTCCACCGTTCCCAACATGACCCTCTCATTCACGATCCCTCTGCTG
ACGACCGCGTCCTGCACCCTGTCTACGGTCCTCCCATCACCCCCAGTGAA
TCTTCCTCCGCCTCCAAGCACCGCGGCCAAAGTCTCGCCGAGCTGAATCA
AACCTTCGGCGATGCCGCGCGCAAAAACGAAGGTGAAGCCGCCAACTACG
GCATTTTCTACGATGACTCGCAATACGACTACATGCAGCACTTGCGCGAG
CTGGGCACCGGCGCCGGCGACGCTTACTTCGTCGAAGCCAAGACGAAGGG
CAAGGACAAGGGCAAAGGATTGAAGCTGGAGGATGCTTTGAAACAGGTAT
CGCTGGATGATGGGCGAAGCGAGTTTGGTGGCACCGAAAGCGTCTACAGC
TATGACATGCGCTCGACGGCGTCTTCCTACGTGCGCAAACCCACCTACCA
GGACCAGCAGAACGTGCCCGATGCTATTGCGGGTTTCCAGCCGGATATGG
ACCCGCGGTTGCGCGAAGCCTTGGAGGCGCTGGAGGACGAGGAGTACGTG
GATGAAGATGACGAGGAGGACGTCTTCGGCCAGTTGACTACGCGGGCAGA
GGAAATGGACCAGGGTGATTGGGAGGATACCATCTTCGACGATGTCGAGG
AAGAAGACGATGGATGGGAATCCGATGCGACAGAAAAGGCCCCCGTGCAG
ATGGACACCACGGCCGCAAAGGCCCGCTACCAAGCCTCAGAGCAGGAGGA
TAAGCCCGGCGAGCTTCCCGAACACAACGAGCCCGCGCCCGACATGCACC
CCGAAGACCAAGGCTGGATGCGCGAATTCGCCAAGTTCAAGAAGGACGCC
AAGTCTGGCAAAACAGCCGGCGTCCCCGCCGGTCCTCCCAGCGTCGTCCC
CTCCCATCAGGGCAGCACCCTCGCCTCGACCGTGTTCACCGTCGGAGGCA
CCCCCATCCGCCGCAAGAAGCGCAAGGGCGCCCTCACCAACCCCTCCGCC
TACTCCATGACTTCGTCCTCCCTCGCCCGTACAGAAGGCCACCGTCTCCT
CGACGACCGCTTCGAGCGCGTCGAAGCCCTCTACTCCCTCGACGAGGAGG
ATGAGTTCGACGACAACATGTCCATGGTCAGTGGAATGACCGGTATGACC
GGTATGACTGGTGTCTCGGGCATTTCGACTGCCTCGTCTCAGGCACCGAG
TCTCGTTGACGCGAACGGTGATGCCGTTCGTCCTTCCCACAACTTCAACA
ACATCATGGATGATTTCCTTGCTGGGTGGGATGACAAGACGAGTTCCCAG
GCTAAGCGGAAGGGCGCAAAGGCGAAGCGCGGAAAGAACGGTAATGAGGC
GATTGGCATTCGCATGCTGGATGAGGTTCGGCAGGGATTGGGCCCTGCTA
GGGTTACTGGGAAGGTGTCGGGCAGGGCGTAGATGCCTCCCCGGAAGCAG
TGGATCGACAAGAAAACCGCAACTACCTACCAACTCTTCCACCGTTCCCA
ACATGACCCTCTCATTCACGATCCCTCTGCTGACGACCGCGTCCTGCACC
CTGTCTACGGTCCTCCCATCACCCCCAGTGAATCTTCCTCCGCCTCCAAG
CACCGCGGCCAAAGTCTCGCCGAGCTGAATCAAACCTTCGGCGATGCCGC
GCGCAAAAACGAAGGTGAAGCCGCCAACTACGGCATTTTCTACGATGACT
CGCAATACGACTACATGCAGCACTTGCGCGAGCTGGGCACCGGCGCCGGC
GACGCTTACTTCGTCGAAGCCAAGACGAAGGGCAAGGACAAGGGCAAAGG
ATTGAAGCTGGAGGATGCTTTGAAACAGGTATCGCTGGATGATGGGCGAA
GCGAGTTTGGTGGCACCGAAAGCGTCTACAGCTATGACATGCGCTCGACG
GCGTCTTCCTACGTGCGCAAACCCACCTACCAGGACCAGCAGAACGTGCC
CGATGCTATTGCGGGTTTCCAGCCGGATATGGACCCGCGGTTGCGCGAAG
CCTTGGAGGCGCTGGAGGACGAGGAGTACGTGGATGAAGATGACGAGGAG
GACGTCTTCGGCCAGTTGACTACGCGGGCAGAGGAAATGGACCAGGGTGA
TTGGGAGGATACCATCTTCGACGATGTCGAGGAAGAAGACGATGGATGGG
AATCCGATGCGACAGAAAAGGCCCCCGTGCAGATGGACACCACGGCCGCA
AAGGCCCGCTACCAAGCCTCAGAGCAGGAGGATAAGCCCGGCGAGCTTCC
CGAACACAACGAGCCCGCGCCCGACATGCACCCCGAAGACCAAGGCTGGA
TGCGCGAATTCGCCAAGTTCAAGAAGGACGCCAAGTCTGGCAAAACAGCC
GGCGTCCCCGCCGGTCCTCCCAGCGTCGTCCCCTCCCATCAGGGCAGCAC
CCTCGCCTCGACCGTGTTCACCGTCGGAGGCACCCCCATCCGCCGCAAGA
AGCGCAAGGGCGCCCTCACCAACCCCTCCGCCTACTCCATGACTTCGTCC
TCCCTCGCCCGTACAGAAGGCCACCGTCTCCTCGACGACCGCTTCGAGCG
CGTCGAAGCCCTCTACTCCCTCGACGAGGAGGATGAGTTCGACGACAACA
TGTCCATGGTCAGTGGAATGACCGGTATGACCGGTATGACTGGTGTCTCG
GGCATTTCGACTGCCTCGTCTCAGGCACCGAGTCTCGTTGACGCGAACGG
TGATGCCGTTCGTCCTTCCCACAACTTCAACAACATCATGGATGATTTCC
TTGCTGGGTGGGATGACAAGACGAGTTCCCAGGCTAAGCGGAAGGGCGCA
AAGGCGAAGCGCGGAAAGAACGGTAATGAGGCGATTGGCATTCGCATGCT
GGATGAGGTTCGGCAGGGATTGGGCCCTGCTAGGGTTACTGGGAAGGTGT
CGGGCAGGGCGTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0042274ribosomal small subunit biogenesis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
M747DRAFT_38320M747DRAFT_38320Aspergillus niger ATCC 13496gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_38320-T1.utr5p1M747DRAFT_38320-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_38320-T1.exon1M747DRAFT_38320-T1.exon1Aspergillus niger ATCC 13496exon
M747DRAFT_38320-T1.exon2M747DRAFT_38320-T1.exon2Aspergillus niger ATCC 13496exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_38320-T1.cdsM747DRAFT_38320-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_38320-T1.utr3p1M747DRAFT_38320-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_38320-T1M747DRAFT_38320-T1-proteinAspergillus niger ATCC 13496polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09262VVF
DBxrefInterPro:IPR007307
DBxrefPFAM:PF04180
ProductLow temperature viability protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851914.1supercontigKZ851914.1:376862..378646 +
Powered by Drupal