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M747DRAFT_86339-T1, M747DRAFT_86339-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_86339-T1
Unique NameM747DRAFT_86339-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851901.1:37055..38428-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_86339-T1 ID=M747DRAFT_86339-T1|Name=M747DRAFT_86339-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1374bp|location=Sequence derived from alignment at KZ851901.1:37055..38428- (Aspergillus niger ATCC 13496)
GTACCATAACAGCATAACTTACCGGCCGGAACATAAGTGGACACTCGGAA
GGAGTCTCCGACCCGACTTCACCCGTGCTTTTTGCCTGATTTGCCTGATT
GTGTTCCCGTCTTTCCCTGAGCAAGCTGGCCGGAGCTAAGGGAGCTACAG
ACAGGCTTGAACGACCCCCGATTTCTATTCTTATTCGTCTCGATTCCCAC
CCCGGTTCTTCTTCTTGTGATTATGCATGAGCTTCTGCTCTTCGCCTCGG
TTCCCGCGCACCAGCATCATGAGCTTCTTCAACAGCTGGCCGGGTTGACG
GCCATGCAACCCCGTCACCGCCTGGAAAGACGCTTGGTTTTCAAGGCCTA
CCGCAAGCCAGGCTTGACCAACACCCGGGTTGGGGCCAGTCAAGATCTGC
AGGGTGTCGAATTGCAGCGCCTTAATAAGATGCTCAATGGAGGCATGTTC
TATACCCAAGTAGTCGGTCCCGTGGCCAAAGCCGACTTTGGCGGGAACCC
TTCCTCGTCGGGAGATCCAGATGTCTCCATGTCCGGATTGGAGGAGAAGC
CATCGTCATCTTCGTCTTCTTACAGTTATGAGGATCAGCCCTGGAAACTC
GAATTTAGAGATATCCCCGAGGCAGGCACTCGATCCGCGGTAACTGCTCG
GCTGATGGCTAGTGCCACGCTGCCTAAAGGTGATATCACGGCGCCCATGA
ATGCCTGGGGTTATAGGTTAGTAGCTTCCCATGCCATTCGGTGTTATATC
AGCTCCTCCATATCTTGATTGGTCCTAGTCGGCTGACAAACTGGGTTCAG
CTTTGTCACTGAGTACGTGGTGGAAGGAGATGTCTTTGTTCTCAATGACA
TCGTTATCTTCCTACACCGTGTCCTGCTTTACCCGACTGGGGCGCAGGAA
TCACATGGACCTCGTCGGCAGCTGCCTGCGTATCAGGAGCTCTCACCGCT
GGAACGGACAGGGAGCTATGTCCTGCAAGCTGCTATCACCGTCCAGGATG
GCGGGAATCAGGAGATGATGAGGACGGCTTCGCAGCATTTGTTCGGGCTT
CGCGAGCAGCTCAAGTCGGCTGTCCGTCTAGAAATGGCGGACCGGCTGTC
TCTGGATACGCGAGCGAAGTAATCATGTATTATGATATCTTTTTAGCAGT
GCTATATACCCCGGAGTTGATGGCTCCCAGTAGATAACTCATTCGAAATT
CAAATTCTGTCATTAGGAGCCGAAGTGAATATTGTTAAGTTTCTTTTGTC
CTTTTTTTTTATTTTTTATTTTAATTTTGTTTTTCTCAAGAGAGAAAGCA
AGCTTGAGCTGAAAGCATACACATAGTTGGATGACAGCGGTGCAGTTGTA
GCATCCATCTTTGTATGGGTTCAA
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Coding sequence (CDS) from alignment at KZ851901.1:37055..38428-

>M747DRAFT_86339-T1 ID=M747DRAFT_86339-T1|Name=M747DRAFT_86339-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=1632bp|location=Sequence derived from alignment at KZ851901.1:37055..38428- (Aspergillus niger ATCC 13496)
CTTTGTCACTGAGTACGTGGTGGAAGGAGATGTCTTTGTTCTCAATGACA
TCGTTATCTTCCTACACCGTGTCCTGCTTTACCCGACTGGGGCGCAGGAA
TCACATGGACCTCGTCGGCAGCTGCCTGCGTATCAGGAGCTCTCACCGCT
GGAACGGACAGGGAGCTATGTCCTGCAAGCTGCTATCACCGTCCAGGATG
GCGGGAATCAGGAGATGATGAGGACGGCTTCGCAGCATTTGTTCGGGCTT
CGCGAGCAGCTCAAGTCGGCTGTCCGTCTAGAAATGGCGGACCGGCTGTC
TCTGGATACGCGAGCGAAGTAAATGCATGAGCTTCTGCTCTTCGCCTCGG
TTCCCGCGCACCAGCATCATGAGCTTCTTCAACAGCTGGCCGGGTTGACG
GCCATGCAACCCCGTCACCGCCTGGAAAGACGCTTGGTTTTCAAGGCCTA
CCGCAAGCCAGGCTTGACCAACACCCGGGTTGGGGCCAGTCAAGATCTGC
AGGGTGTCGAATTGCAGCGCCTTAATAAGATGCTCAATGGAGGCATGTTC
TATACCCAAGTAGTCGGTCCCGTGGCCAAAGCCGACTTTGGCGGGAACCC
TTCCTCGTCGGGAGATCCAGATGTCTCCATGTCCGGATTGGAGGAGAAGC
CATCGTCATCTTCGTCTTCTTACAGTTATGAGGATCAGCCCTGGAAACTC
GAATTTAGAGATATCCCCGAGGCAGGCACTCGATCCGCGGTAACTGCTCG
GCTGATGGCTAGTGCCACGCTGCCTAAAGGTGATATCACGGCGCCCATGA
ATGCCTGGGGTTATAGCTTTGTCACTGAGTACGTGGTGGAAGGAGATGTC
TTTGTTCTCAATGACATCGTTATCTTCCTACACCGTGTCCTGCTTTACCC
GACTGGGGCGCAGGAATCACATGGACCTCGTCGGCAGCTGCCTGCGTATC
AGGAGCTCTCACCGCTGGAACGGACAGGGAGCTATGTCCTGCAAGCTGCT
ATCACCGTCCAGGATGGCGGGAATCAGGAGATGATGAGGACGGCTTCGCA
GCATTTGTTCGGGCTTCGCGAGCAGCTCAAGTCGGCTGTCCGTCTAGAAA
TGGCGGACCGGCTGTCTCTGGATACGCGAGCGAAGTAAATGCATGAGCTT
CTGCTCTTCGCCTCGGTTCCCGCGCACCAGCATCATGAGCTTCTTCAACA
GCTGGCCGGGTTGACGGCCATGCAACCCCGTCACCGCCTGGAAAGACGCT
TGGTTTTCAAGGCCTACCGCAAGCCAGGCTTGACCAACACCCGGGTTGGG
GCCAGTCAAGATCTGCAGGGTGTCGAATTGCAGCGCCTTAATAAGATGCT
CAATGGAGGCATGTTCTATACCCAAGTAGTCGGTCCCGTGGCCAAAGCCG
ACTTTGGCGGGAACCCTTCCTCGTCGGGAGATCCAGATGTCTCCATGTCC
GGATTGGAGGAGAAGCCATCGTCATCTTCGTCTTCTTACAGTTATGAGGA
TCAGCCCTGGAAACTCGAATTTAGAGATATCCCCGAGGCAGGCACTCGAT
CCGCGGTAACTGCTCGGCTGATGGCTAGTGCCACGCTGCCTAAAGGTGAT
ATCACGGCGCCCATGAATGCCTGGGGTTATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Molecular Function
TermDefinition
GO:0003712transcription coregulator activity
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription by RNA polymerase II
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SRB5M747DRAFT_86339Aspergillus niger ATCC 13496gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_86339-T1M747DRAFT_86339-T1-proteinAspergillus niger ATCC 13496polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_86339-T1.cdsM747DRAFT_86339-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_86339-T1.utr3p2M747DRAFT_86339-T1.utr3p2Aspergillus niger ATCC 13496three_prime_UTR
M747DRAFT_86339-T1.utr3p1M747DRAFT_86339-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_86339-T1.exon3M747DRAFT_86339-T1.exon3Aspergillus niger ATCC 13496exon
M747DRAFT_86339-T1.exon2M747DRAFT_86339-T1.exon2Aspergillus niger ATCC 13496exon
M747DRAFT_86339-T1.exon1M747DRAFT_86339-T1.exon1Aspergillus niger ATCC 13496exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_86339-T1.utr5p1M747DRAFT_86339-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR019095
DBxrefPFAM:PF09637
ProductMediator of RNA polymerase II transcription subunit 18
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851901.1supercontigKZ851901.1:37055..38428 -
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