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Sequences
The following sequences are available for this feature:
mRNA from alignment at An01:804754..805553+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_000291-T1 ID=CBS51388_000291-T1|Name=CBS51388_000291-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=800bp|location=Sequence derived from alignment at An01:804754..805553+ (Aspergillus niger CBS 513.88)
ATGCGCTGCGCTAGCTTCGCCGTGGCCCTCCTGGCCCTTTTCACTGGTCT
CTACAGCTACCTGAACGCGCGCCTGGAGCAGTTCTACATCTTCGATCCCT
CCCACCTGCACGACCTGTCGCAGCGCGCCATTGCCGCTCATGGCAATGAC
ACTCGCTCGGTGGTGAACTTCATCGTCTCCGAGCTGGGCGAGAAGGTCAC
CGACACGCACCTGAACCTGGACGAGGAATGGGTCTTCAACAACGCCGGTG
GTGCGATGGGGGCAATGTATATTATCCATGCTAGTGCGTCCCCTCTTTTG
CTCCATACCACCTCTATAATTATCCATGGTGCCTGAACTAAGCTTTGATT
CTCCTATAGGTATCACGGAGTACTTGATCATTTTCGGTATGGCTTCCCCT
GTCTCCCGGATATTTTTATGCCCTCGATTGCACGAGCTAACTACTCTCTC
CCCGTCCATTAGGCACCGCTATTGGTACTGAGGGCCACACTGGCCGTCAC
ACGGCCGACGACTACTTCAACATCCTTCAGGGCACCCAGCTCGCCTACGT
CCCTGGATCCTACGAGCCCGAGGTTTACCCCCAGGGTAGCGTGCACCACC
TCCGCCGCGGTGAGGTCAAGCAGTACAAGATGGATGAGTCGTGCTTTGCT
CTGGAGTACGCCCGTGGCTGGATTCCCCCGATGCTCTTCTTCGGATACGC
CGATACCTTCTCCAGCACTCTCGACTTCCCGACTCTGTGGGCGACGTCCA
GAATCACTGGTCGCGAGATGATCTCCAACCTGCTCAAGGGCAAGATGTGA
back to topCoding sequence (CDS) from alignment at An01:804754..805553+ >CBS51388_000291-T1 ID=CBS51388_000291-T1|Name=CBS51388_000291-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1944bp|location=Sequence derived from alignment at An01:804754..805553+ (Aspergillus niger CBS 513.88)
ATGCGCTGCGCTAGCTTCGCCGTGGCCCTCCTGGCCCTTTTCACTGGTCT
CTACAGCTACCTGAACGCGCGCCTGGAGCAGTTCTACATCTTCGATCCCT
CCCACCTGCACGACCTGTCGCAGCGCGCCATTGCCGCTCATGGCAATGAC
ACTCGCTCGGTGGTGAACTTCATCGTCTCCGAGCTGGGCGAGAAGGTCAC
CGACACGCACCTGAACCTGGACGAGGAATGGGTCTTCAACAACGCCGGTG
GTGCGATGGGGGCAATGTATATTATCCATGCTAGTATCACGGAGTACTTG
ATCATTTTCGGCACCGCTATTGGTACTGAGGGCCACACTGGCCGTCACAC
GGCCGACGACTACTTCAACATCCTTCAGGGCACCCAGCTCGCCTACGTCC
CTGGATCCTACGAGCCCGAGGTTTACCCCCAGGGTAGCGTGCACCACCTC
CGCCGCGGTGAGGTCAAGCAGTACAAGATGGATGAGTCGTGCTTTGCTCT
GGAGTACGCCCGTGGCTGGATTCCCCCGATGCTCTTCTTCGGATACGCCG
ATACCTTCTCCAGCACTCTCGACTTCCCGACTCTGTGGGCGACGTCCAGA
ATCACTGGTCGCGAGATGATCTCCAACCTGCTCAAGGGCAAGATGTGAAT
GCGCTGCGCTAGCTTCGCCGTGGCCCTCCTGGCCCTTTTCACTGGTCTCT
ACAGCTACCTGAACGCGCGCCTGGAGCAGTTCTACATCTTCGATCCCTCC
CACCTGCACGACCTGTCGCAGCGCGCCATTGCCGCTCATGGCAATGACAC
TCGCTCGGTGGTGAACTTCATCGTCTCCGAGCTGGGCGAGAAGGTCACCG
ACACGCACCTGAACCTGGACGAGGAATGGGTCTTCAACAACGCCGGTGGT
GCGATGGGGGCAATGTATATTATCCATGCTAGTATCACGGAGTACTTGAT
CATTTTCGGCACCGCTATTGGTACTGAGGGCCACACTGGCCGTCACACGG
CCGACGACTACTTCAACATCCTTCAGGGCACCCAGCTCGCCTACGTCCCT
GGATCCTACGAGCCCGAGGTTTACCCCCAGGGTAGCGTGCACCACCTCCG
CCGCGGTGAGGTCAAGCAGTACAAGATGGATGAGTCGTGCTTTGCTCTGG
AGTACGCCCGTGGCTGGATTCCCCCGATGCTCTTCTTCGGATACGCCGAT
ACCTTCTCCAGCACTCTCGACTTCCCGACTCTGTGGGCGACGTCCAGAAT
CACTGGTCGCGAGATGATCTCCAACCTGCTCAAGGGCAAGATGTGAATGC
GCTGCGCTAGCTTCGCCGTGGCCCTCCTGGCCCTTTTCACTGGTCTCTAC
AGCTACCTGAACGCGCGCCTGGAGCAGTTCTACATCTTCGATCCCTCCCA
CCTGCACGACCTGTCGCAGCGCGCCATTGCCGCTCATGGCAATGACACTC
GCTCGGTGGTGAACTTCATCGTCTCCGAGCTGGGCGAGAAGGTCACCGAC
ACGCACCTGAACCTGGACGAGGAATGGGTCTTCAACAACGCCGGTGGTGC
GATGGGGGCAATGTATATTATCCATGCTAGTATCACGGAGTACTTGATCA
TTTTCGGCACCGCTATTGGTACTGAGGGCCACACTGGCCGTCACACGGCC
GACGACTACTTCAACATCCTTCAGGGCACCCAGCTCGCCTACGTCCCTGG
ATCCTACGAGCCCGAGGTTTACCCCCAGGGTAGCGTGCACCACCTCCGCC
GCGGTGAGGTCAAGCAGTACAAGATGGATGAGTCGTGCTTTGCTCTGGAG
TACGCCCGTGGCTGGATTCCCCCGATGCTCTTCTTCGGATACGCCGATAC
CTTCTCCAGCACTCTCGACTTCCCGACTCTGTGGGCGACGTCCAGAATCA
CTGGTCGCGAGATGATCTCCAACCTGCTCAAGGGCAAGATGTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | SECRETED:SignalP(1-19) |
| DBxref | InterPro:IPR006716 |
| DBxref | PFAM:PF04622 |
| Product | Squalene epoxidase |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An01 | supercontig | An01:804754..805553 + |
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