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Sequences
The following sequences are available for this feature:
mRNA from alignment at An01:805910..807157+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_000292-T1 ID=CBS51388_000292-T1|Name=CBS51388_000292-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1248bp|location=Sequence derived from alignment at An01:805910..807157+ (Aspergillus niger CBS 513.88)
ATGCCCCCCTCCCCCTGCGCCCGCTGCCACGACCAACGGGCAGTTATCAT
ACGGCCCAAGAACCGGCAAAAGCTCTGCCGCACCTGCTTCCTGCACGTCT
TCGAGACCGAAGTCCACGAAACCATCACCTCGACCTCTCTCTTCCACCCC
GGCGAACGAGTCGCCATCGGCGCCAGCGGCGGCAAAGACAGCACCGTCCT
GGCCGCCGTCCTCAAGACCCTCAACGAACGCTACAACTATGGACTCGACC
TATGCCTCCTCTCCATCGACGAAGGCATCAAGGGTTACCGCGACGACAGT
CTCGAGACCGTGAAACGCAACGCCCAACAATACAACATGCCGCTCGTAAT
CGTCAGCTACGGCGACCTGTACGGCTGGACAATGGACCAGGTGGTGGCGC
AGGTCGGCAAAAAGGGCAACTGCACATACTGCGGGGTATTTCGGCGGCAG
GCGCTGGATCGCGGGGCCGCGAAACTGGGCATTAAGCATGTGGTGACGGG
TCATAATGCGGATGATGTGGCGGAGACAGTGATGATGAATTTGCTGAGAG
GGGATTTGCCGCGCTTGTCGCGGGGCACGAGTATTGTGACGGGGTCCGCC
GCCAGTGATATTAAGAGGAGTAAGCCGTTGAAGTATGCTTATGAGAAGGA
GATCGTGCTGTATGCGCATCATCGCCAGTTGGATTATTTCTCTACGGAGT
GTATCTATTCGCCTGAGGCGTTTCGGGGTAGTGCGAGGACGTTGATTAAG
GATTTGGAGAAGATTAGGCCGTCGTCGATTTTGGATATTGTTAAGTCTGG
GGAGGATATGGCGCTTCTGGTGCCCGCTGAGGTTAGGGGGAAGGGGGCTG
AGGATGAGGAGGCCGGTGGTGGTGGTGGGTGTGGGAGTCAGAATGGGCGG
ACGAGGGGTGGTGAGATGGCGGAGATGGAGAGGAAGTTGAAGGAGGATGA
GGCTGCCAAAGATAGGGAGATGGAGATTACTTCTGACAGCTTGTCTAGGA
GGCAGCAGCAGCAGTTGGAGCAGATGCAGACGCCGGCTCAGAAGAAGGTC
AAGTCGCAGGTACTGGGGACGTGTGAGCGCTGCGGTTATATCTCCAGTCA
GCGCGTGTGCAAGGCATGTACGCTTCTGGAGGGATTGAATAAGAATCGGC
CCAAGACGGCGATTGAGATGGAGATTGGTTTGGAAGATGAGGAGAGCAGC
TCGACGTTGCGCAGGCAGATGGAGAAGGTTGAGCTGGGGGGTGTTTGA back to topCoding sequence (CDS) from alignment at An01:805910..807157+ >CBS51388_000292-T1 ID=CBS51388_000292-T1|Name=CBS51388_000292-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1248bp|location=Sequence derived from alignment at An01:805910..807157+ (Aspergillus niger CBS 513.88)
ATGCCCCCCTCCCCCTGCGCCCGCTGCCACGACCAACGGGCAGTTATCAT
ACGGCCCAAGAACCGGCAAAAGCTCTGCCGCACCTGCTTCCTGCACGTCT
TCGAGACCGAAGTCCACGAAACCATCACCTCGACCTCTCTCTTCCACCCC
GGCGAACGAGTCGCCATCGGCGCCAGCGGCGGCAAAGACAGCACCGTCCT
GGCCGCCGTCCTCAAGACCCTCAACGAACGCTACAACTATGGACTCGACC
TATGCCTCCTCTCCATCGACGAAGGCATCAAGGGTTACCGCGACGACAGT
CTCGAGACCGTGAAACGCAACGCCCAACAATACAACATGCCGCTCGTAAT
CGTCAGCTACGGCGACCTGTACGGCTGGACAATGGACCAGGTGGTGGCGC
AGGTCGGCAAAAAGGGCAACTGCACATACTGCGGGGTATTTCGGCGGCAG
GCGCTGGATCGCGGGGCCGCGAAACTGGGCATTAAGCATGTGGTGACGGG
TCATAATGCGGATGATGTGGCGGAGACAGTGATGATGAATTTGCTGAGAG
GGGATTTGCCGCGCTTGTCGCGGGGCACGAGTATTGTGACGGGGTCCGCC
GCCAGTGATATTAAGAGGAGTAAGCCGTTGAAGTATGCTTATGAGAAGGA
GATCGTGCTGTATGCGCATCATCGCCAGTTGGATTATTTCTCTACGGAGT
GTATCTATTCGCCTGAGGCGTTTCGGGGTAGTGCGAGGACGTTGATTAAG
GATTTGGAGAAGATTAGGCCGTCGTCGATTTTGGATATTGTTAAGTCTGG
GGAGGATATGGCGCTTCTGGTGCCCGCTGAGGTTAGGGGGAAGGGGGCTG
AGGATGAGGAGGCCGGTGGTGGTGGTGGGTGTGGGAGTCAGAATGGGCGG
ACGAGGGGTGGTGAGATGGCGGAGATGGAGAGGAAGTTGAAGGAGGATGA
GGCTGCCAAAGATAGGGAGATGGAGATTACTTCTGACAGCTTGTCTAGGA
GGCAGCAGCAGCAGTTGGAGCAGATGCAGACGCCGGCTCAGAAGAAGGTC
AAGTCGCAGGTACTGGGGACGTGTGAGCGCTGCGGTTATATCTCCAGTCA
GCGCGTGTGCAAGGCATGTACGCTTCTGGAGGGATTGAATAAGAATCGGC
CCAAGACGGCGATTGAGATGGAGATTGGTTTGGAAGATGAGGAGAGCAGC
TCGACGTTGCGCAGGCAGATGGAGAAGGTTGAGCTGGGGGGTGTTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000049 | tRNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0034227 | tRNA thio-modification |
| GO:0002098 | tRNA wobble uridine modification |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09262IZ6 |
| DBxref | InterPro:IPR000541 |
| DBxref | InterPro:IPR032442 |
| DBxref | InterPro:IPR011063 |
| DBxref | InterPro:IPR014729 |
| DBxref | PFAM:PF16503 |
| DBxref | PFAM:PF01171 |
| Product | nucleotidyltransferase |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An01 | supercontig | An01:805910..807157 + |
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