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CBS51388_000310-T1, CBS51388_000310-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_000310-T1
Unique NameCBS51388_000310-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An01:862745..863773-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_000310-T1 ID=CBS51388_000310-T1|Name=CBS51388_000310-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1029bp|location=Sequence derived from alignment at An01:862745..863773- (Aspergillus niger CBS 513.88)
ATGGGTGAGTGAATTTTTCCAAAATACCTTTATTGTCTCTCAATGGTGGA
TCGGCTATTGCGATATTCCCCCTGCGATCGTTGAACGACTTTTTACGGCA
TCATTTTATCTCAGCGACATCGGATAATATAAGACTCGATTGAAATTGGA
CTGGAATCGGTTGGGAACAAGAATGGTGGAAGGATTTTTCAACTCTGGAC
GACTAATGGGGGAGGACGAAATTTTCGAAGATATCGTGGCGCAGAAATGA
AATCATCGCAAAGGACCGACGACTTGCACAACAGTCAACAACGTTTCGCA
CGGAATATACGCAACGACTGAAGCCATTGCACGAGGCAGTTCTCATCGGA
TGGGAGAACATGGCTGACTGGGATCCTTAGGGCGTCTCACCGAGTACCAG
GTCATTGGGCGTCACCTGCCCACCGAGGCTAACCCCACGCCCAAGCTGTA
CCGCATGCGCATCTTCGCGCCCAACACTGTTGTCGCTAAGTCCCGGTTCT
GGTACTTCCTGACCCAGCTCCGCAAGGTCAAGAAGGCCAACGGTGAGATC
GTCAGCATCAATGTGGTATGTGTGGCCGTTATCAAGCGACAACTCGGCAG
TGTTGGCTGACGCCTGTCTTTTTTCCCCATCCAATAGATCAGCGAGAAGC
GCCCTACCAAGGTCAAGAACTTCGGTATCTGGCTCCGCTACGACTCCCGC
TCCGGCACCCACAACATGTACAAGGAGTTCCGTGAGATGAGCCGCACCGA
GGCTGTTGAGGCTCTCTACCAGGACATGGCTGCCCGCCACCGTGCCCGCT
TCGGCTCCATCCACGTATGTTGAGATTCCTATCCTCTTTTGCTGAGGAAT
ATTGCGATCTAACTACGTTCCTACAGATCCTTAAGGTTGTTGAGATCGAG
AACGCCGACAGCATCCGCCGCCCCTACATCAAGCAGCTCCTCTCCAAGAA
CCTCAAGTTCCCCCTGCCCCACCGTGCTGCCCACGGCAAGAAGCTGTTCG
CTTACTCTCGTCCCACTACTTTCGCGTAA
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Coding sequence (CDS) from alignment at An01:862745..863773-

>CBS51388_000310-T1 ID=CBS51388_000310-T1|Name=CBS51388_000310-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=2076bp|location=Sequence derived from alignment at An01:862745..863773- (Aspergillus niger CBS 513.88)
ATCCTTAAGGTTGTTGAGATCGAGAACGCCGACAGCATCCGCCGCCCCTA
CATCAAGCAGCTCCTCTCCAAGAACCTCAAGTTCCCCCTGCCCCACCGTG
CTGCCCACGGCAAGAAGCTGTTCGCTTACTCTCGTCCCACTACTTTCGCG
TAAATCAGCGAGAAGCGCCCTACCAAGGTCAAGAACTTCGGTATCTGGCT
CCGCTACGACTCCCGCTCCGGCACCCACAACATGTACAAGGAGTTCCGTG
AGATGAGCCGCACCGAGGCTGTTGAGGCTCTCTACCAGGACATGGCTGCC
CGCCACCGTGCCCGCTTCGGCTCCATCCACGGCGTCTCACCGAGTACCAG
GTCATTGGGCGTCACCTGCCCACCGAGGCTAACCCCACGCCCAAGCTGTA
CCGCATGCGCATCTTCGCGCCCAACACTGTTGTCGCTAAGTCCCGGTTCT
GGTACTTCCTGACCCAGCTCCGCAAGGTCAAGAAGGCCAACGGTGAGATC
GTCAGCATCAATGTGATGGATCCTTAAGGTTGTTGAGATCGAGAACGCCG
ACAGCATCCGCCGCCCCTACATCAAGCAGCTCCTCTCCAAGAACCTCAAG
TTCCCCCTGCCCCACCGTGCTGCCCACGGCAAGAAGCTGTTCGCTTACTC
TCGTCCCACTACTTTCGCGTAAATCAGCGAGAAGCGCCCTACCAAGGTCA
AGAACTTCGGTATCTGGCTCCGCTACGACTCCCGCTCCGGCACCCACAAC
ATGTACAAGGAGTTCCGTGAGATGAGCCGCACCGAGGCTGTTGAGGCTCT
CTACCAGGACATGGCTGCCCGCCACCGTGCCCGCTTCGGCTCCATCCACG
GCGTCTCACCGAGTACCAGGTCATTGGGCGTCACCTGCCCACCGAGGCTA
ACCCCACGCCCAAGCTGTACCGCATGCGCATCTTCGCGCCCAACACTGTT
GTCGCTAAGTCCCGGTTCTGGTACTTCCTGACCCAGCTCCGCAAGGTCAA
GAAGGCCAACGGTGAGATCGTCAGCATCAATGTGATGGATCCTTAAGGTT
GTTGAGATCGAGAACGCCGACAGCATCCGCCGCCCCTACATCAAGCAGCT
CCTCTCCAAGAACCTCAAGTTCCCCCTGCCCCACCGTGCTGCCCACGGCA
AGAAGCTGTTCGCTTACTCTCGTCCCACTACTTTCGCGTAAATCAGCGAG
AAGCGCCCTACCAAGGTCAAGAACTTCGGTATCTGGCTCCGCTACGACTC
CCGCTCCGGCACCCACAACATGTACAAGGAGTTCCGTGAGATGAGCCGCA
CCGAGGCTGTTGAGGCTCTCTACCAGGACATGGCTGCCCGCCACCGTGCC
CGCTTCGGCTCCATCCACGGCGTCTCACCGAGTACCAGGTCATTGGGCGT
CACCTGCCCACCGAGGCTAACCCCACGCCCAAGCTGTACCGCATGCGCAT
CTTCGCGCCCAACACTGTTGTCGCTAAGTCCCGGTTCTGGTACTTCCTGA
CCCAGCTCCGCAAGGTCAAGAAGGCCAACGGTGAGATCGTCAGCATCAAT
GTGATGGATCCTTAAGGTTGTTGAGATCGAGAACGCCGACAGCATCCGCC
GCCCCTACATCAAGCAGCTCCTCTCCAAGAACCTCAAGTTCCCCCTGCCC
CACCGTGCTGCCCACGGCAAGAAGCTGTTCGCTTACTCTCGTCCCACTAC
TTTCGCGTAAATCAGCGAGAAGCGCCCTACCAAGGTCAAGAACTTCGGTA
TCTGGCTCCGCTACGACTCCCGCTCCGGCACCCACAACATGTACAAGGAG
TTCCGTGAGATGAGCCGCACCGAGGCTGTTGAGGCTCTCTACCAGGACAT
GGCTGCCCGCCACCGTGCCCGCTTCGGCTCCATCCACGGCGTCTCACCGA
GTACCAGGTCATTGGGCGTCACCTGCCCACCGAGGCTAACCCCACGCCCA
AGCTGTACCGCATGCGCATCTTCGCGCCCAACACTGTTGTCGCTAAGTCC
CGGTTCTGGTACTTCCTGACCCAGCTCCGCAAGGTCAAGAAGGCCAACGG
TGAGATCGTCAGCATCAATGTGATGG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL20ACBS51388_000310Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_000310-T1CBS51388_000310-T1-proteinAspergillus niger CBS 513.88polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_000310-T1.cdsCBS51388_000310-T1.cdsAspergillus niger CBS 513.88CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_000310-T1.exon4CBS51388_000310-T1.exon4Aspergillus niger CBS 513.88exon
CBS51388_000310-T1.exon3CBS51388_000310-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_000310-T1.exon2CBS51388_000310-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_000310-T1.exon1CBS51388_000310-T1.exon1Aspergillus niger CBS 513.88exon


Properties
Property NameValue
DBxrefInterPro:IPR028877
DBxrefInterPro:IPR023573
DBxrefInterPro:IPR021138
DBxrefPFAM:PF01775
Product60S ribosomal protein L20A
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An01supercontigAn01:862745..863773 -
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