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CBS51388_000343-T1, CBS51388_000343-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_000343-T1
Unique NameCBS51388_000343-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An01:961990..963943+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_000343-T1 ID=CBS51388_000343-T1|Name=CBS51388_000343-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1954bp|location=Sequence derived from alignment at An01:961990..963943+ (Aspergillus niger CBS 513.88)
ATGGCCAGCCATATCATCGGCAACCGCAACAGCACGCCTGAAGCCTCCAA
GTCCAGTCTTCGTCCTCCATCGTCGTCTCGTAATCTAGGATCGCACCAGC
TTCGTGCATCGGCCGATATGTCGGGCTTCCCATCTCCTCTGTCATCCCGC
AGCATCCGTCCTTCCTCGGAAGTCTACTTCAATCAGCAGTCGCAGGCGTC
GAACAACGCGGAGGATCCGTTGGACCGTGCGGCTCAGCAGTGGCTCGCGG
ATATTGATCAGTACGAGACTACATTGGAAGAAATGGCCGCTGCCACGCTG
GACCAGGATTTCAAGGATGAGCTTAGCGCCATCGAGCAGTGGTTCCGGGT
TCTTAGCGAGGCGGAGAGGACTGCTGCCCTTTACGCTCTGTTGCAGCAGA
CCACTCAGGTGCAGATTCGTTTCTTCATTCAGGTCTTGCAGCAGATGGCC
AAGAGCCATCCCATGTCGGGACTGTTGTCTCCGGCCAACTTTGGCGAGAA
GGGTGAGTTGCATATCAATCCAGACAAGCGTGACAGGTATTAACAATGTT
CTTTTGGCAGATGCCATGTCTAACCGCCTGAATGATGCCATGTCCAAGTT
GAACGTGGACAGCTCCCGGAGCTCCCTCGGTCGCCCCCCGCCGTCCCCCG
GTGCCAAGCGCAACTCCGGGCTCGACTCGTCCACCATCAATGCCATGTTC
CCTGATGCTGCTGCGGCAATTGCAAAGAAGAAGGCTGAGTTCACCCAGCA
AACGGGCAATGCTCCTCCTTCGAACCGGAACAGCGCTGTTTTCGATCGGA
CTTCCTTTGTGGCACCCACCATTTCGGCCCCAGACAACAGCAACGACACC
TTGGGCCAGCCTCCGGTTTCGCCCTGGGCCCAGCGCGGATCTGAGCCGCA
ACCCCCTATCGCCCGTCCCAAGTCTTCGTCCGGTCATCAGCCCATGGGCC
AATTCAGCCAGACTCCTTCGAGCCTGCGCTCTCCGCTCCCTACCCAAACC
GCCACGATCCCTGCCCCCGAGATTGATGCTCCTTTGCTCTCGCCTTACAA
TGTTGGAAATGCCAGCTGGGCCTCCATGACCAACACCCCCATGACGGCGA
CCTTTGGCCAGCAGCCGCAGCAGCCCCAGCAGAATTCGCAGGCCGATATG
GTGGCCAACGCGACTGCGATGAAGCTGGCCGCACTGTCGACCGTCAACAA
CCGTATTGCACTTGATGATGCTCGCAAGTACCGTCGGGCTCGCTCCAACG
ATGGCCAGGGTAAGAACTCGGCCAACAGCCACGCCATGTCTCAGGGTGGC
CTGGCCAGCCCGGGCCTCCCGGGCCACAGTCACCTTGTTGCCGGACAGCT
GTTGAACACTCAGCAGCTGGCGGCTTTGCAGGCACAGCAACAGGCTGCGA
TGGCGGGTCGTCGCTCCCGCCCGACGTCGCCTGGAATCGCCATGCAGGGT
GCTGGCGGACTTGGTCCGATGGGCTTCACTTCGCCGCAGAACAACGGCTT
CTTGGCAGCATATGACCCGAACAACCCGCTCATGGGTAACGGCCTGGGTG
CACTTGGTATCGGGCAGTTTGGCCTGGGAGGTCCTGAGGGCTACCTCTCA
GACCACTCGGAAGTGGCTCGCGGCCGGTCCCCGCGTGGTCGTCGCGGTAG
CTCGAAGCCGCCGGAGGACCCCACGGACCCTAACCTCTTGAAGGACATTC
CCAGCTGGCTGAGATCGCTGCGGCTGCACAAGTACACGGAAAACCTGAAG
GACTTGAAATGGACGGAGCTGGTCGAATTGAACGACAAGGCGCTGGAAGA
CCGCGGCGTCAATGCTCTTGGTGCCAGAAACAAAATGCTCAAGGTGAGTT
ACATAAACTCTCCCAGGAGTGTTGAGACATCATGCTAATCTTTGTAGGTT
TTTGAACAAGTCAGAGAAGCCAAAGCCGAGGGCAAGCTCGACAACATTGC
GTGA
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Coding sequence (CDS) from alignment at An01:961990..963943+

>CBS51388_000343-T1 ID=CBS51388_000343-T1|Name=CBS51388_000343-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=5526bp|location=Sequence derived from alignment at An01:961990..963943+ (Aspergillus niger CBS 513.88)
ATGGCCAGCCATATCATCGGCAACCGCAACAGCACGCCTGAAGCCTCCAA
GTCCAGTCTTCGTCCTCCATCGTCGTCTCGTAATCTAGGATCGCACCAGC
TTCGTGCATCGGCCGATATGTCGGGCTTCCCATCTCCTCTGTCATCCCGC
AGCATCCGTCCTTCCTCGGAAGTCTACTTCAATCAGCAGTCGCAGGCGTC
GAACAACGCGGAGGATCCGTTGGACCGTGCGGCTCAGCAGTGGCTCGCGG
ATATTGATCAGTACGAGACTACATTGGAAGAAATGGCCGCTGCCACGCTG
GACCAGGATTTCAAGGATGAGCTTAGCGCCATCGAGCAGTGGTTCCGGGT
TCTTAGCGAGGCGGAGAGGACTGCTGCCCTTTACGCTCTGTTGCAGCAGA
CCACTCAGGTGCAGATTCGTTTCTTCATTCAGGTCTTGCAGCAGATGGCC
AAGAGCCATCCCATGTCGGGACTGTTGTCTCCGGCCAACTTTGGCGAGAA
GGATGCCATGTCTAACCGCCTGAATGATGCCATGTCCAAGTTGAACGTGG
ACAGCTCCCGGAGCTCCCTCGGTCGCCCCCCGCCGTCCCCCGGTGCCAAG
CGCAACTCCGGGCTCGACTCGTCCACCATCAATGCCATGTTCCCTGATGC
TGCTGCGGCAATTGCAAAGAAGAAGGCTGAGTTCACCCAGCAAACGGGCA
ATGCTCCTCCTTCGAACCGGAACAGCGCTGTTTTCGATCGGACTTCCTTT
GTGGCACCCACCATTTCGGCCCCAGACAACAGCAACGACACCTTGGGCCA
GCCTCCGGTTTCGCCCTGGGCCCAGCGCGGATCTGAGCCGCAACCCCCTA
TCGCCCGTCCCAAGTCTTCGTCCGGTCATCAGCCCATGGGCCAATTCAGC
CAGACTCCTTCGAGCCTGCGCTCTCCGCTCCCTACCCAAACCGCCACGAT
CCCTGCCCCCGAGATTGATGCTCCTTTGCTCTCGCCTTACAATGTTGGAA
ATGCCAGCTGGGCCTCCATGACCAACACCCCCATGACGGCGACCTTTGGC
CAGCAGCCGCAGCAGCCCCAGCAGAATTCGCAGGCCGATATGGTGGCCAA
CGCGACTGCGATGAAGCTGGCCGCACTGTCGACCGTCAACAACCGTATTG
CACTTGATGATGCTCGCAAGTACCGTCGGGCTCGCTCCAACGATGGCCAG
GGTAAGAACTCGGCCAACAGCCACGCCATGTCTCAGGGTGGCCTGGCCAG
CCCGGGCCTCCCGGGCCACAGTCACCTTGTTGCCGGACAGCTGTTGAACA
CTCAGCAGCTGGCGGCTTTGCAGGCACAGCAACAGGCTGCGATGGCGGGT
CGTCGCTCCCGCCCGACGTCGCCTGGAATCGCCATGCAGGGTGCTGGCGG
ACTTGGTCCGATGGGCTTCACTTCGCCGCAGAACAACGGCTTCTTGGCAG
CATATGACCCGAACAACCCGCTCATGGGTAACGGCCTGGGTGCACTTGGT
ATCGGGCAGTTTGGCCTGGGAGGTCCTGAGGGCTACCTCTCAGACCACTC
GGAAGTGGCTCGCGGCCGGTCCCCGCGTGGTCGTCGCGGTAGCTCGAAGC
CGCCGGAGGACCCCACGGACCCTAACCTCTTGAAGGACATTCCCAGCTGG
CTGAGATCGCTGCGGCTGCACAAGTACACGGAAAACCTGAAGGACTTGAA
ATGGACGGAGCTGGTCGAATTGAACGACAAGGCGCTGGAAGACCGCGGCG
TCAATGCTCTTGGTGCCAGAAACAAAATGCTCAAGGTTTTTGAACAAGTC
AGAGAAGCCAAAGCCGAGGGCAAGCTCGACAACATTGCGTGAATGGCCAG
CCATATCATCGGCAACCGCAACAGCACGCCTGAAGCCTCCAAGTCCAGTC
TTCGTCCTCCATCGTCGTCTCGTAATCTAGGATCGCACCAGCTTCGTGCA
TCGGCCGATATGTCGGGCTTCCCATCTCCTCTGTCATCCCGCAGCATCCG
TCCTTCCTCGGAAGTCTACTTCAATCAGCAGTCGCAGGCGTCGAACAACG
CGGAGGATCCGTTGGACCGTGCGGCTCAGCAGTGGCTCGCGGATATTGAT
CAGTACGAGACTACATTGGAAGAAATGGCCGCTGCCACGCTGGACCAGGA
TTTCAAGGATGAGCTTAGCGCCATCGAGCAGTGGTTCCGGGTTCTTAGCG
AGGCGGAGAGGACTGCTGCCCTTTACGCTCTGTTGCAGCAGACCACTCAG
GTGCAGATTCGTTTCTTCATTCAGGTCTTGCAGCAGATGGCCAAGAGCCA
TCCCATGTCGGGACTGTTGTCTCCGGCCAACTTTGGCGAGAAGGATGCCA
TGTCTAACCGCCTGAATGATGCCATGTCCAAGTTGAACGTGGACAGCTCC
CGGAGCTCCCTCGGTCGCCCCCCGCCGTCCCCCGGTGCCAAGCGCAACTC
CGGGCTCGACTCGTCCACCATCAATGCCATGTTCCCTGATGCTGCTGCGG
CAATTGCAAAGAAGAAGGCTGAGTTCACCCAGCAAACGGGCAATGCTCCT
CCTTCGAACCGGAACAGCGCTGTTTTCGATCGGACTTCCTTTGTGGCACC
CACCATTTCGGCCCCAGACAACAGCAACGACACCTTGGGCCAGCCTCCGG
TTTCGCCCTGGGCCCAGCGCGGATCTGAGCCGCAACCCCCTATCGCCCGT
CCCAAGTCTTCGTCCGGTCATCAGCCCATGGGCCAATTCAGCCAGACTCC
TTCGAGCCTGCGCTCTCCGCTCCCTACCCAAACCGCCACGATCCCTGCCC
CCGAGATTGATGCTCCTTTGCTCTCGCCTTACAATGTTGGAAATGCCAGC
TGGGCCTCCATGACCAACACCCCCATGACGGCGACCTTTGGCCAGCAGCC
GCAGCAGCCCCAGCAGAATTCGCAGGCCGATATGGTGGCCAACGCGACTG
CGATGAAGCTGGCCGCACTGTCGACCGTCAACAACCGTATTGCACTTGAT
GATGCTCGCAAGTACCGTCGGGCTCGCTCCAACGATGGCCAGGGTAAGAA
CTCGGCCAACAGCCACGCCATGTCTCAGGGTGGCCTGGCCAGCCCGGGCC
TCCCGGGCCACAGTCACCTTGTTGCCGGACAGCTGTTGAACACTCAGCAG
CTGGCGGCTTTGCAGGCACAGCAACAGGCTGCGATGGCGGGTCGTCGCTC
CCGCCCGACGTCGCCTGGAATCGCCATGCAGGGTGCTGGCGGACTTGGTC
CGATGGGCTTCACTTCGCCGCAGAACAACGGCTTCTTGGCAGCATATGAC
CCGAACAACCCGCTCATGGGTAACGGCCTGGGTGCACTTGGTATCGGGCA
GTTTGGCCTGGGAGGTCCTGAGGGCTACCTCTCAGACCACTCGGAAGTGG
CTCGCGGCCGGTCCCCGCGTGGTCGTCGCGGTAGCTCGAAGCCGCCGGAG
GACCCCACGGACCCTAACCTCTTGAAGGACATTCCCAGCTGGCTGAGATC
GCTGCGGCTGCACAAGTACACGGAAAACCTGAAGGACTTGAAATGGACGG
AGCTGGTCGAATTGAACGACAAGGCGCTGGAAGACCGCGGCGTCAATGCT
CTTGGTGCCAGAAACAAAATGCTCAAGGTTTTTGAACAAGTCAGAGAAGC
CAAAGCCGAGGGCAAGCTCGACAACATTGCGTGAATGGCCAGCCATATCA
TCGGCAACCGCAACAGCACGCCTGAAGCCTCCAAGTCCAGTCTTCGTCCT
CCATCGTCGTCTCGTAATCTAGGATCGCACCAGCTTCGTGCATCGGCCGA
TATGTCGGGCTTCCCATCTCCTCTGTCATCCCGCAGCATCCGTCCTTCCT
CGGAAGTCTACTTCAATCAGCAGTCGCAGGCGTCGAACAACGCGGAGGAT
CCGTTGGACCGTGCGGCTCAGCAGTGGCTCGCGGATATTGATCAGTACGA
GACTACATTGGAAGAAATGGCCGCTGCCACGCTGGACCAGGATTTCAAGG
ATGAGCTTAGCGCCATCGAGCAGTGGTTCCGGGTTCTTAGCGAGGCGGAG
AGGACTGCTGCCCTTTACGCTCTGTTGCAGCAGACCACTCAGGTGCAGAT
TCGTTTCTTCATTCAGGTCTTGCAGCAGATGGCCAAGAGCCATCCCATGT
CGGGACTGTTGTCTCCGGCCAACTTTGGCGAGAAGGATGCCATGTCTAAC
CGCCTGAATGATGCCATGTCCAAGTTGAACGTGGACAGCTCCCGGAGCTC
CCTCGGTCGCCCCCCGCCGTCCCCCGGTGCCAAGCGCAACTCCGGGCTCG
ACTCGTCCACCATCAATGCCATGTTCCCTGATGCTGCTGCGGCAATTGCA
AAGAAGAAGGCTGAGTTCACCCAGCAAACGGGCAATGCTCCTCCTTCGAA
CCGGAACAGCGCTGTTTTCGATCGGACTTCCTTTGTGGCACCCACCATTT
CGGCCCCAGACAACAGCAACGACACCTTGGGCCAGCCTCCGGTTTCGCCC
TGGGCCCAGCGCGGATCTGAGCCGCAACCCCCTATCGCCCGTCCCAAGTC
TTCGTCCGGTCATCAGCCCATGGGCCAATTCAGCCAGACTCCTTCGAGCC
TGCGCTCTCCGCTCCCTACCCAAACCGCCACGATCCCTGCCCCCGAGATT
GATGCTCCTTTGCTCTCGCCTTACAATGTTGGAAATGCCAGCTGGGCCTC
CATGACCAACACCCCCATGACGGCGACCTTTGGCCAGCAGCCGCAGCAGC
CCCAGCAGAATTCGCAGGCCGATATGGTGGCCAACGCGACTGCGATGAAG
CTGGCCGCACTGTCGACCGTCAACAACCGTATTGCACTTGATGATGCTCG
CAAGTACCGTCGGGCTCGCTCCAACGATGGCCAGGGTAAGAACTCGGCCA
ACAGCCACGCCATGTCTCAGGGTGGCCTGGCCAGCCCGGGCCTCCCGGGC
CACAGTCACCTTGTTGCCGGACAGCTGTTGAACACTCAGCAGCTGGCGGC
TTTGCAGGCACAGCAACAGGCTGCGATGGCGGGTCGTCGCTCCCGCCCGA
CGTCGCCTGGAATCGCCATGCAGGGTGCTGGCGGACTTGGTCCGATGGGC
TTCACTTCGCCGCAGAACAACGGCTTCTTGGCAGCATATGACCCGAACAA
CCCGCTCATGGGTAACGGCCTGGGTGCACTTGGTATCGGGCAGTTTGGCC
TGGGAGGTCCTGAGGGCTACCTCTCAGACCACTCGGAAGTGGCTCGCGGC
CGGTCCCCGCGTGGTCGTCGCGGTAGCTCGAAGCCGCCGGAGGACCCCAC
GGACCCTAACCTCTTGAAGGACATTCCCAGCTGGCTGAGATCGCTGCGGC
TGCACAAGTACACGGAAAACCTGAAGGACTTGAAATGGACGGAGCTGGTC
GAATTGAACGACAAGGCGCTGGAAGACCGCGGCGTCAATGCTCTTGGTGC
CAGAAACAAAATGCTCAAGGTTTTTGAACAAGTCAGAGAAGCCAAAGCCG
AGGGCAAGCTCGACAACATTGCGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0043488regulation of mRNA stability
Vocabulary: Molecular Function
TermDefinition
GO:0003729mRNA binding
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
VTS1CBS51388_000343Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_000343-T1.exon1CBS51388_000343-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_000343-T1.exon2CBS51388_000343-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_000343-T1.exon3CBS51388_000343-T1.exon3Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_000343-T1.cdsCBS51388_000343-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_000343-T1CBS51388_000343-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR037635
DBxrefInterPro:IPR013761
DBxrefInterPro:IPR001660
DBxrefPFAM:PF07647
ProductFlap-structured DNA-binding and RNA-binding protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An01supercontigAn01:961990..963943 +
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