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CBS51388_000388-T1, CBS51388_000388-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_000388-T1
Unique NameCBS51388_000388-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An01:1125481..1126225+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_000388-T1 ID=CBS51388_000388-T1|Name=CBS51388_000388-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=745bp|location=Sequence derived from alignment at An01:1125481..1126225+ (Aspergillus niger CBS 513.88)
ATGCGTAAGTATCATCTCCTTGGTGAAATCGAATAGGCGAACTAATATGT
ATCCCATTGGGCAGCTCCCAAGTTCGACCCCAATGAGGTGAAGATCATGT
AAGTTGCATATTCTGAAGATCACTCGGCGCGATTTTTGACGCAGCTGCTA
ACGATCTTTTATAGCCACCTGAGAGTGACTGGTGGTGAGGTCGGTGCCCA
GTCTGCTCTGGCCCCCAAGATTGGTCCTCTCGGTCTGTCCCCCAAGAAGA
TCGGTGAAGATATTGCCAAGAACACTGGTGACTGGGTAAGCACATCGTCC
GGGTCAACCATAGGAGGTTACAGTGCTAACAGCATCTTTTTGGTATTATA
GAAGGGTCTCCGTGTCACCGTCCGCCTGACCATCCAGAACCGTCAGGCCG
CGGTCTCCGTTGTGCCCTCCGCCTCTTCCCTGGTCATCAAGGCCCTCAAG
GAGCCTCCCCGTGACCGCAAGAAGGAGAAGAACATCAAGCACAGCAAGTC
CATCCCTCTGGACGAGATCATCGAGATCGCCCGCAAGATGCGCCACCGCT
CTCTTGCTAAGGAGCTCAAGGGTACCGTCCTTGAGATCCTCGGTACCGCT
TTCTCCGTCGGTTGCCAGGTCGATGGCCGCAGCCCCAAGGACGTCTCCGA
CGACGTCAAGGCTGGCGAGATCGACAGTATGTTAACCACCATACGATATC
TTTCGAGACTTTGCCACTAACTATTTCGCAGTCCCCTCCGAGTAA
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Coding sequence (CDS) from alignment at An01:1125481..1126225+

>CBS51388_000388-T1 ID=CBS51388_000388-T1|Name=CBS51388_000388-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=2490bp|location=Sequence derived from alignment at An01:1125481..1126225+ (Aspergillus niger CBS 513.88)
ATGCCTCCCAAGTTCGACCCCAATGAGGTGAAGATCATCCACCTGAGAGT
GACTGGTGGTGAGGTCGGTGCCCAGTCTGCTCTGGCCCCCAAGATTGGTC
CTCTCGGTCTGTCCCCCAAGAAGATCGGTGAAGATATTGCCAAGAACACT
GGTGACTGGAAGGGTCTCCGTGTCACCGTCCGCCTGACCATCCAGAACCG
TCAGGCCGCGGTCTCCGTTGTGCCCTCCGCCTCTTCCCTGGTCATCAAGG
CCCTCAAGGAGCCTCCCCGTGACCGCAAGAAGGAGAAGAACATCAAGCAC
AGCAAGTCCATCCCTCTGGACGAGATCATCGAGATCGCCCGCAAGATGCG
CCACCGCTCTCTTGCTAAGGAGCTCAAGGGTACCGTCCTTGAGATCCTCG
GTACCGCTTTCTCCGTCGGTTGCCAGGTCGATGGCCGCAGCCCCAAGGAC
GTCTCCGACGACGTCAAGGCTGGCGAGATCGACATCCCCTCCGAGTAAAT
GCCTCCCAAGTTCGACCCCAATGAGGTGAAGATCATCCACCTGAGAGTGA
CTGGTGGTGAGGTCGGTGCCCAGTCTGCTCTGGCCCCCAAGATTGGTCCT
CTCGGTCTGTCCCCCAAGAAGATCGGTGAAGATATTGCCAAGAACACTGG
TGACTGGAAGGGTCTCCGTGTCACCGTCCGCCTGACCATCCAGAACCGTC
AGGCCGCGGTCTCCGTTGTGCCCTCCGCCTCTTCCCTGGTCATCAAGGCC
CTCAAGGAGCCTCCCCGTGACCGCAAGAAGGAGAAGAACATCAAGCACAG
CAAGTCCATCCCTCTGGACGAGATCATCGAGATCGCCCGCAAGATGCGCC
ACCGCTCTCTTGCTAAGGAGCTCAAGGGTACCGTCCTTGAGATCCTCGGT
ACCGCTTTCTCCGTCGGTTGCCAGGTCGATGGCCGCAGCCCCAAGGACGT
CTCCGACGACGTCAAGGCTGGCGAGATCGACATCCCCTCCGAGTAAATGC
CTCCCAAGTTCGACCCCAATGAGGTGAAGATCATCCACCTGAGAGTGACT
GGTGGTGAGGTCGGTGCCCAGTCTGCTCTGGCCCCCAAGATTGGTCCTCT
CGGTCTGTCCCCCAAGAAGATCGGTGAAGATATTGCCAAGAACACTGGTG
ACTGGAAGGGTCTCCGTGTCACCGTCCGCCTGACCATCCAGAACCGTCAG
GCCGCGGTCTCCGTTGTGCCCTCCGCCTCTTCCCTGGTCATCAAGGCCCT
CAAGGAGCCTCCCCGTGACCGCAAGAAGGAGAAGAACATCAAGCACAGCA
AGTCCATCCCTCTGGACGAGATCATCGAGATCGCCCGCAAGATGCGCCAC
CGCTCTCTTGCTAAGGAGCTCAAGGGTACCGTCCTTGAGATCCTCGGTAC
CGCTTTCTCCGTCGGTTGCCAGGTCGATGGCCGCAGCCCCAAGGACGTCT
CCGACGACGTCAAGGCTGGCGAGATCGACATCCCCTCCGAGTAAATGCCT
CCCAAGTTCGACCCCAATGAGGTGAAGATCATCCACCTGAGAGTGACTGG
TGGTGAGGTCGGTGCCCAGTCTGCTCTGGCCCCCAAGATTGGTCCTCTCG
GTCTGTCCCCCAAGAAGATCGGTGAAGATATTGCCAAGAACACTGGTGAC
TGGAAGGGTCTCCGTGTCACCGTCCGCCTGACCATCCAGAACCGTCAGGC
CGCGGTCTCCGTTGTGCCCTCCGCCTCTTCCCTGGTCATCAAGGCCCTCA
AGGAGCCTCCCCGTGACCGCAAGAAGGAGAAGAACATCAAGCACAGCAAG
TCCATCCCTCTGGACGAGATCATCGAGATCGCCCGCAAGATGCGCCACCG
CTCTCTTGCTAAGGAGCTCAAGGGTACCGTCCTTGAGATCCTCGGTACCG
CTTTCTCCGTCGGTTGCCAGGTCGATGGCCGCAGCCCCAAGGACGTCTCC
GACGACGTCAAGGCTGGCGAGATCGACATCCCCTCCGAGTAAATGCCTCC
CAAGTTCGACCCCAATGAGGTGAAGATCATCCACCTGAGAGTGACTGGTG
GTGAGGTCGGTGCCCAGTCTGCTCTGGCCCCCAAGATTGGTCCTCTCGGT
CTGTCCCCCAAGAAGATCGGTGAAGATATTGCCAAGAACACTGGTGACTG
GAAGGGTCTCCGTGTCACCGTCCGCCTGACCATCCAGAACCGTCAGGCCG
CGGTCTCCGTTGTGCCCTCCGCCTCTTCCCTGGTCATCAAGGCCCTCAAG
GAGCCTCCCCGTGACCGCAAGAAGGAGAAGAACATCAAGCACAGCAAGTC
CATCCCTCTGGACGAGATCATCGAGATCGCCCGCAAGATGCGCCACCGCT
CTCTTGCTAAGGAGCTCAAGGGTACCGTCCTTGAGATCCTCGGTACCGCT
TTCTCCGTCGGTTGCCAGGTCGATGGCCGCAGCCCCAAGGACGTCTCCGA
CGACGTCAAGGCTGGCGAGATCGACATCCCCTCCGAGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL12CBS51388_000388Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_000388-T1CBS51388_000388-T1-proteinAspergillus niger CBS 513.88polypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_000388-T1.exon1CBS51388_000388-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_000388-T1.exon2CBS51388_000388-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_000388-T1.exon3CBS51388_000388-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_000388-T1.exon4CBS51388_000388-T1.exon4Aspergillus niger CBS 513.88exon
CBS51388_000388-T1.exon5CBS51388_000388-T1.exon5Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_000388-T1.cdsCBS51388_000388-T1.cdsAspergillus niger CBS 513.88CDS


Properties
Property NameValue
NoteBUSCO:EOG092651LN
DBxrefInterPro:IPR020784
DBxrefInterPro:IPR036796
DBxrefInterPro:IPR020783
DBxrefInterPro:IPR036769
DBxrefInterPro:IPR000911
DBxrefPFAM:PF03946
DBxrefPFAM:PF00298
Product60S ribosomal protein L12
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An01supercontigAn01:1125481..1126225 +
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