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Sequences
The following sequences are available for this feature:
mRNA from alignment at An01:1170822..1172321+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_000394-T1 ID=CBS51388_000394-T1|Name=CBS51388_000394-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1500bp|location=Sequence derived from alignment at An01:1170822..1172321+ (Aspergillus niger CBS 513.88)
ATGGAGGTAGCTAGCGCGCAACAGCCTTCTCTTCAACTAGACGCCTCCAA
CGCTGCCCCGGTTGCTGACACAATGGACGCCTCCATGGATATTGACATGG
ACATTGATCTTGGACCCCTTCCAGAAGCAGAACCAATTGAGACTGTGAGT
ATTACTATTGTCTGATCTATTACAGATTCCAGTCGTCCACTCCTAACGTC
TTCGTCGACTGTCCAGGAACAAACTCTCGTGGCAACGACTGCTGTTCAAG
ATGGATCCATCGACCCTCTTAATGAGGAGGCACAGTATGAAAAGGTTCAT
ATACGCGGTGTAGATGAGTTGACGACAGACAACATCAAACAATTCGCTGT
CGAACACTTCGCCCTTGAGGAGCCAAGCCGCGTTGAATGGATCGATGACA
CATCAGCGAACATCCTATACTCTTCGCCGGAGGTTGGTCTTCAAGCTCTG
TCAGCATTTACGCAGGTTAGCGAGGAGGAGGATGCATCCGCGTTGCCTGC
TCTACGGTTGCGATCCGCGAAGCTCCTCTCTACCCACCCCGACTCTGTGC
TCCAGGTTAGGTCAGCTGTCAAAGCGGATCGCAAAAAGCCTCGTGCGCAC
GAAGCCAGTCGGTTTTACCTCATGCACCCTGAACATGACCCTCGGGAACG
CTTGCGACGAGAATTTGCAGATAGGCGACGCTCGGGAGGTGGAGACGTCA
GTGACGGGGATTATAGACGAAGACGGTTTGATGGTCGAGAACTGCAACGT
CGGAGAGACCGTGATGCAGGCGAGAGCTTCAGTGCCAATATGTATGATGA
CACGGTGCCTGCCAGCCGCGACCGCTCGTCGGACCGCAGTCGCGAAAGGC
GGGGAAGACGAGGGGGGCGCGATCTATTCCCACAGGAAGAAGGACGATTG
TCTGGTCGCCTTCGCAACCGTAGCGCGTCACCCGGTCGAGATACACTGAT
GGAAGGCGGGTATGCTGAGGACGATCGGCAGGATCGCAGACGGTTCCGCG
ACCGGTCGCCCCAGCTCGGTCGCCGCAATGAAGGCAAGGAGCTCTTCCCA
TCCTCGGGAGCCAAAAGCAGCGATGCAAATGCGCGGGAGCTCTTCCCGAA
CCGAACAGCCAAGGAACTCTTTCCTCAAAAAGTTAGCAATCATCGCCGTT
CAGACGCGATCGATGGCGCAGATGAGACGGCAGATCTCTTCTCGCGGAGG
ATTTCAGTGCCTCTTGTTGATGGCAGCCAAGACCAACAACCTGCGCGCCG
AAAGCGCGACATTGAGCTTTTCCCTGAGACGACCGAGACAAGCGGTCTCA
ACATCCGCGGGGCAGCAAGGCAGGATCAGGGAATGTCGATTCGTGGTGCG
GCAAATGGCATCTCAATCAAAGGACGGGGCGCGTCTGTTCGTGAACTGTT
CCCTAATAAATACGGTTCCAACGCAGGCAAGGAGTTGTTTTCCGATAAGA
TTGAGGGGCGAGGAGGACCACGACGCAGGGCGGAGGACATGTTTAGCTGA
back to topCoding sequence (CDS) from alignment at An01:1170822..1172321+ >CBS51388_000394-T1 ID=CBS51388_000394-T1|Name=CBS51388_000394-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=2856bp|location=Sequence derived from alignment at An01:1170822..1172321+ (Aspergillus niger CBS 513.88)
ATGGAGGTAGCTAGCGCGCAACAGCCTTCTCTTCAACTAGACGCCTCCAA
CGCTGCCCCGGTTGCTGACACAATGGACGCCTCCATGGATATTGACATGG
ACATTGATCTTGGACCCCTTCCAGAAGCAGAACCAATTGAGACTGAACAA
ACTCTCGTGGCAACGACTGCTGTTCAAGATGGATCCATCGACCCTCTTAA
TGAGGAGGCACAGTATGAAAAGGTTCATATACGCGGTGTAGATGAGTTGA
CGACAGACAACATCAAACAATTCGCTGTCGAACACTTCGCCCTTGAGGAG
CCAAGCCGCGTTGAATGGATCGATGACACATCAGCGAACATCCTATACTC
TTCGCCGGAGGTTGGTCTTCAAGCTCTGTCAGCATTTACGCAGGTTAGCG
AGGAGGAGGATGCATCCGCGTTGCCTGCTCTACGGTTGCGATCCGCGAAG
CTCCTCTCTACCCACCCCGACTCTGTGCTCCAGGTTAGGTCAGCTGTCAA
AGCGGATCGCAAAAAGCCTCGTGCGCACGAAGCCAGTCGGTTTTACCTCA
TGCACCCTGAACATGACCCTCGGGAACGCTTGCGACGAGAATTTGCAGAT
AGGCGACGCTCGGGAGGTGGAGACGTCAGTGACGGGGATTATAGACGAAG
ACGGTTTGATGGTCGAGAACTGCAACGTCGGAGAGACCGTGATGCAGGCG
AGAGCTTCAGTGCCAATATGTATGATGACACGGTGCCTGCCAGCCGCGAC
CGCTCGTCGGACCGCAGTCGCGAAAGGCGGGGAAGACGAGGGGGGCGCGA
TCTATTCCCACAGGAAGAAGGACGATTGTCTGGTCGCCTTCGCAACCGTA
GCGCGTCACCCGGTCGAGATACACTGATGGAAGGCGGGTATGCTGAGGAC
GATCGGCAGGATCGCAGACGGTTCCGCGACCGGTCGCCCCAGCTCGGTCG
CCGCAATGAAGGCAAGGAGCTCTTCCCATCCTCGGGAGCCAAAAGCAGCG
ATGCAAATGCGCGGGAGCTCTTCCCGAACCGAACAGCCAAGGAACTCTTT
CCTCAAAAAGTTAGCAATCATCGCCGTTCAGACGCGATCGATGGCGCAGA
TGAGACGGCAGATCTCTTCTCGCGGAGGATTTCAGTGCCTCTTGTTGATG
GCAGCCAAGACCAACAACCTGCGCGCCGAAAGCGCGACATTGAGCTTTTC
CCTGAGACGACCGAGACAAGCGGTCTCAACATCCGCGGGGCAGCAAGGCA
GGATCAGGGAATGTCGATTCGTGGTGCGGCAAATGGCATCTCAATCAAAG
GACGGGGCGCGTCTGTTCGTGAACTGTTCCCTAATAAATACGGTTCCAAC
GCAGGCAAGGAGTTGTTTTCCGATAAGATTGAGGGGCGAGGAGGACCACG
ACGCAGGGCGGAGGACATGTTTAGCTGAATGGAGGTAGCTAGCGCGCAAC
AGCCTTCTCTTCAACTAGACGCCTCCAACGCTGCCCCGGTTGCTGACACA
ATGGACGCCTCCATGGATATTGACATGGACATTGATCTTGGACCCCTTCC
AGAAGCAGAACCAATTGAGACTGAACAAACTCTCGTGGCAACGACTGCTG
TTCAAGATGGATCCATCGACCCTCTTAATGAGGAGGCACAGTATGAAAAG
GTTCATATACGCGGTGTAGATGAGTTGACGACAGACAACATCAAACAATT
CGCTGTCGAACACTTCGCCCTTGAGGAGCCAAGCCGCGTTGAATGGATCG
ATGACACATCAGCGAACATCCTATACTCTTCGCCGGAGGTTGGTCTTCAA
GCTCTGTCAGCATTTACGCAGGTTAGCGAGGAGGAGGATGCATCCGCGTT
GCCTGCTCTACGGTTGCGATCCGCGAAGCTCCTCTCTACCCACCCCGACT
CTGTGCTCCAGGTTAGGTCAGCTGTCAAAGCGGATCGCAAAAAGCCTCGT
GCGCACGAAGCCAGTCGGTTTTACCTCATGCACCCTGAACATGACCCTCG
GGAACGCTTGCGACGAGAATTTGCAGATAGGCGACGCTCGGGAGGTGGAG
ACGTCAGTGACGGGGATTATAGACGAAGACGGTTTGATGGTCGAGAACTG
CAACGTCGGAGAGACCGTGATGCAGGCGAGAGCTTCAGTGCCAATATGTA
TGATGACACGGTGCCTGCCAGCCGCGACCGCTCGTCGGACCGCAGTCGCG
AAAGGCGGGGAAGACGAGGGGGGCGCGATCTATTCCCACAGGAAGAAGGA
CGATTGTCTGGTCGCCTTCGCAACCGTAGCGCGTCACCCGGTCGAGATAC
ACTGATGGAAGGCGGGTATGCTGAGGACGATCGGCAGGATCGCAGACGGT
TCCGCGACCGGTCGCCCCAGCTCGGTCGCCGCAATGAAGGCAAGGAGCTC
TTCCCATCCTCGGGAGCCAAAAGCAGCGATGCAAATGCGCGGGAGCTCTT
CCCGAACCGAACAGCCAAGGAACTCTTTCCTCAAAAAGTTAGCAATCATC
GCCGTTCAGACGCGATCGATGGCGCAGATGAGACGGCAGATCTCTTCTCG
CGGAGGATTTCAGTGCCTCTTGTTGATGGCAGCCAAGACCAACAACCTGC
GCGCCGAAAGCGCGACATTGAGCTTTTCCCTGAGACGACCGAGACAAGCG
GTCTCAACATCCGCGGGGCAGCAAGGCAGGATCAGGGAATGTCGATTCGT
GGTGCGGCAAATGGCATCTCAATCAAAGGACGGGGCGCGTCTGTTCGTGA
ACTGTTCCCTAATAAATACGGTTCCAACGCAGGCAAGGAGTTGTTTTCCG
ATAAGATTGAGGGGCGAGGAGGACCACGACGCAGGGCGGAGGACATGTTT
AGCTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003729 | mRNA binding |
| GO:0000340 | RNA 7-methylguanosine cap binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR019416 |
| DBxref | PFAM:PF10309 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An01 | supercontig | An01:1170822..1172321 + |
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