You are here

Home

CBS51388_000684-T1, CBS51388_000684-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_000684-T1
Unique NameCBS51388_000684-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An01:2002624..2004175-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_000684-T1 ID=CBS51388_000684-T1|Name=CBS51388_000684-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1552bp|location=Sequence derived from alignment at An01:2002624..2004175- (Aspergillus niger CBS 513.88)
ATGGATCAGCACGACGACTTCGACAGCGTCTCGTGGAGGCATGACCCGGA
CAGCGATCTCTCGCGACCCACGACCTCCGGAACAGACACAGAGGAACAGG
CGCCATACACTCACGATGTCAATGGCAAACGGAGGATGAGCAACGCTCAA
GAAAGCCCTCAGGCTGGACCACTGGCGGATGCCGTCGACCTGGCGGGCAT
CGGCGACGGCGTACTAGAGTGTCGGGTAGATTCACCGTTGAAGGAGAATG
ATGGAACGAAAGACGCTTATATCTCCTATTTGGTTACAACTACGGTGGGT
TATCTTTACCTTCAGTGATCTCAGATGGAAAAGGCTGTGCGGTTGCAGTG
CATGCTGACTAGAATGATAGACCGATTTCAAGTCCTTCCAGAAACCCGAG
TTCACCGTGCGACGCAGATTCACCGACTTCTACTTCCTATACAAGACACT
TTATCGCGAATACCCTGCCTGCGCCGTCCCGCCGCTGCCGGATAAGCATA
AGATGGAGTATGTCCGCGGCGATCGGTTCGGACCCGAATTCACTACCCGG
CGAGCATGGTCTTTACATCGCTTTTTGAAACGGCTTACGCTGCATCCCGT
GCTTCGTCGCGCACCGTTACTGGCCATCTTCCTGGAATCGCCCGACTGGA
ATGCACACATGCGGTTGCGGTCCACGCGCAACTCGACCAGCACCTCGGAC
GGCAGCGGGGTCCCTGGGATCTTTGACAACTTTACCGACACCTTTGTCAA
CGCTTTCACCAAGGTGCATAAGCCGGATAAGCGGTTTATTGAAGTGCGGG
AGAAGGCCGATAAACTGGACGAGGACCTCAATCATGTGGAGAAGATTGTA
GCCCGAGTGGCTCGGCGGGAATCGGATCTTGAGGCAGACTATAATGACCT
GGCTACGCAGTTCCGCAAACTTGTACCCCTGGAACCGGAGGTGGAGGTGC
CCCTACAAGTCTTTGCGGCATCGGTAGAGGAGACGGGGCGCGGGCTCAAG
ACGCTCAAGGATCACACTGACCAGAATTATCTGGGGTCGCTGCGGGATAT
GGAGGCGTACATTGTCTCGCTTAAAGCCCTCCTCAAAACGCGCGAGCAGA
AACAGCTCGACTTCGAAGCGCTGGTTGACTATCGAAACAAGGCGGTGGCG
GAGCGGGACTCCCTCGCCTCTAACCCCTCGTCCTACTATGCCTCCAACCC
GCTGACCTCGTCCCCGGCCTCGTTCATCCGGTCCAAGATGGAGGACATGC
GGGGCGTCGACCACGAGCAGTCGCGACGCGAGAGGGTGCGGAAGTTGGAG
CTTCGCATTGACGAGCTCACGCGCGAGGTCGAATCGGCTAAAACGACGTC
GGAGATGTTCGACGAGGAAGTCGTGCGCGAGGTGGCAGACTTTGAGCGCA
TCAAGGCCGTAGAGTTCCGGGATACGCTGGGAGCGTTGGCCGAGAAGCAG
ATCGAGTTCTACCAGGGGGTACTGAATACCTGGGAACGATTTGTGGCTGA
GATGGAGGGAGATCTGGAAGAAGAGCATGACCCAGGCACGGAGGCCAGGT
GA
back to top

Coding sequence (CDS) from alignment at An01:2002624..2004175-

>CBS51388_000684-T1 ID=CBS51388_000684-T1|Name=CBS51388_000684-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=2952bp|location=Sequence derived from alignment at An01:2002624..2004175- (Aspergillus niger CBS 513.88)
ACCGATTTCAAGTCCTTCCAGAAACCCGAGTTCACCGTGCGACGCAGATT
CACCGACTTCTACTTCCTATACAAGACACTTTATCGCGAATACCCTGCCT
GCGCCGTCCCGCCGCTGCCGGATAAGCATAAGATGGAGTATGTCCGCGGC
GATCGGTTCGGACCCGAATTCACTACCCGGCGAGCATGGTCTTTACATCG
CTTTTTGAAACGGCTTACGCTGCATCCCGTGCTTCGTCGCGCACCGTTAC
TGGCCATCTTCCTGGAATCGCCCGACTGGAATGCACACATGCGGTTGCGG
TCCACGCGCAACTCGACCAGCACCTCGGACGGCAGCGGGGTCCCTGGGAT
CTTTGACAACTTTACCGACACCTTTGTCAACGCTTTCACCAAGGTGCATA
AGCCGGATAAGCGGTTTATTGAAGTGCGGGAGAAGGCCGATAAACTGGAC
GAGGACCTCAATCATGTGGAGAAGATTGTAGCCCGAGTGGCTCGGCGGGA
ATCGGATCTTGAGGCAGACTATAATGACCTGGCTACGCAGTTCCGCAAAC
TTGTACCCCTGGAACCGGAGGTGGAGGTGCCCCTACAAGTCTTTGCGGCA
TCGGTAGAGGAGACGGGGCGCGGGCTCAAGACGCTCAAGGATCACACTGA
CCAGAATTATCTGGGGTCGCTGCGGGATATGGAGGCGTACATTGTCTCGC
TTAAAGCCCTCCTCAAAACGCGCGAGCAGAAACAGCTCGACTTCGAAGCG
CTGGTTGACTATCGAAACAAGGCGGTGGCGGAGCGGGACTCCCTCGCCTC
TAACCCCTCGTCCTACTATGCCTCCAACCCGCTGACCTCGTCCCCGGCCT
CGTTCATCCGGTCCAAGATGGAGGACATGCGGGGCGTCGACCACGAGCAG
TCGCGACGCGAGAGGGTGCGGAAGTTGGAGCTTCGCATTGACGAGCTCAC
GCGCGAGGTCGAATCGGCTAAAACGACGTCGGAGATGTTCGACGAGGAAG
TCGTGCGCGAGGTGGCAGACTTTGAGCGCATCAAGGCCGTAGAGTTCCGG
GATACGCTGGGAGCGTTGGCCGAGAAGCAGATCGAGTTCTACCAGGGGGT
ACTGAATACCTGGGAACGATTTGTGGCTGAGATGGAGGGAGATCTGGAAG
AAGAGCATGACCCAGGCACGGAGGCCAGGTGAATGGATCAGCACGACGAC
TTCGACAGCGTCTCGTGGAGGCATGACCCGGACAGCGATCTCTCGCGACC
CACGACCTCCGGAACAGACACAGAGGAACAGGCGCCATACACTCACGATG
TCAATGGCAAACGGAGGATGAGCAACGCTCAAGAAAGCCCTCAGGCTGGA
CCACTGGCGGATGCCGTCGACCTGGCGGGCATCGGCGACGGCGTACTAGA
GTGTCGGGTAGATTCACCGTTGAAGGAGAATGATGGAACGAAAGACGCTT
ATATCTCCTATTTGGTTACAACTACGACCGATTTCAAGTCCTTCCAGAAA
CCCGAGTTCACCGTGCGACGCAGATTCACCGACTTCTACTTCCTATACAA
GACACTTTATCGCGAATACCCTGCCTGCGCCGTCCCGCCGCTGCCGGATA
AGCATAAGATGGAGTATGTCCGCGGCGATCGGTTCGGACCCGAATTCACT
ACCCGGCGAGCATGGTCTTTACATCGCTTTTTGAAACGGCTTACGCTGCA
TCCCGTGCTTCGTCGCGCACCGTTACTGGCCATCTTCCTGGAATCGCCCG
ACTGGAATGCACACATGCGGTTGCGGTCCACGCGCAACTCGACCAGCACC
TCGGACGGCAGCGGGGTCCCTGGGATCTTTGACAACTTTACCGACACCTT
TGTCAACGCTTTCACCAAGGTGCATAAGCCGGATAAGCGGTTTATTGAAG
TGCGGGAGAAGGCCGATAAACTGGACGAGGACCTCAATCATGTGGAGAAG
ATTGTAGCCCGAGTGGCTCGGCGGGAATCGGATCTTGAGGCAGACTATAA
TGACCTGGCTACGCAGTTCCGCAAACTTGTACCCCTGGAACCGGAGGTGG
AGGTGCCCCTACAAGTCTTTGCGGCATCGGTAGAGGAGACGGGGCGCGGG
CTCAAGACGCTCAAGGATCACACTGACCAGAATTATCTGGGGTCGCTGCG
GGATATGGAGGCGTACATTGTCTCGCTTAAAGCCCTCCTCAAAACGCGCG
AGCAGAAACAGCTCGACTTCGAAGCGCTGGTTGACTATCGAAACAAGGCG
GTGGCGGAGCGGGACTCCCTCGCCTCTAACCCCTCGTCCTACTATGCCTC
CAACCCGCTGACCTCGTCCCCGGCCTCGTTCATCCGGTCCAAGATGGAGG
ACATGCGGGGCGTCGACCACGAGCAGTCGCGACGCGAGAGGGTGCGGAAG
TTGGAGCTTCGCATTGACGAGCTCACGCGCGAGGTCGAATCGGCTAAAAC
GACGTCGGAGATGTTCGACGAGGAAGTCGTGCGCGAGGTGGCAGACTTTG
AGCGCATCAAGGCCGTAGAGTTCCGGGATACGCTGGGAGCGTTGGCCGAG
AAGCAGATCGAGTTCTACCAGGGGGTACTGAATACCTGGGAACGATTTGT
GGCTGAGATGGAGGGAGATCTGGAAGAAGAGCATGACCCAGGCACGGAGG
CCAGGTGAATGGATCAGCACGACGACTTCGACAGCGTCTCGTGGAGGCAT
GACCCGGACAGCGATCTCTCGCGACCCACGACCTCCGGAACAGACACAGA
GGAACAGGCGCCATACACTCACGATGTCAATGGCAAACGGAGGATGAGCA
ACGCTCAAGAAAGCCCTCAGGCTGGACCACTGGCGGATGCCGTCGACCTG
GCGGGCATCGGCGACGGCGTACTAGAGTGTCGGGTAGATTCACCGTTGAA
GGAGAATGATGGAACGAAAGACGCTTATATCTCCTATTTGGTTACAACTA
CG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0035091phosphatidylinositol binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SNX4CBS51388_000684Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_000684-T1CBS51388_000684-T1-proteinAspergillus niger CBS 513.88polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_000684-T1.cdsCBS51388_000684-T1.cdsAspergillus niger CBS 513.88CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_000684-T1.exon2CBS51388_000684-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_000684-T1.exon1CBS51388_000684-T1.exon1Aspergillus niger CBS 513.88exon


Properties
Property NameValue
NoteBUSCO:EOG09261PNZ
DBxrefInterPro:IPR027267
DBxrefInterPro:IPR036871
DBxrefInterPro:IPR015404
DBxrefInterPro:IPR001683
DBxrefPFAM:PF09325
DBxrefPFAM:PF00787
Productintercellular trafficking and secretion
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An01supercontigAn01:2002624..2004175 -
Powered by Drupal