|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at An01:2908736..2909253+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_000995-T1 ID=CBS51388_000995-T1|Name=CBS51388_000995-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=518bp|location=Sequence derived from alignment at An01:2908736..2909253+ (Aspergillus niger CBS 513.88)
ATGTCCGAAAGAGGCTCGTTCCGTGGAGGTGGCCGTGGCCGCGGCGGAGG
CTATGACCGGTCTGGCGGTCGTGGCGCCCACAGAGGTGGCGGTGCTGGTG
GCGGTGCCCACCAGCAGCAGCAGCAGGAGAAGCCCAAGAAGGAAAACATC
CTCGACCTCAACAAGTATATGGACAAGGAGGTGCGCGTCAAGTTCAATGG
CGGTCGTGAGGGTAAGATCCACCCCTACTGTTGCAATTTACATACACTCC
TGCTGATATTTGTGTCCAGTTATTGGTACGCTCAAGGGATACGACCAACT
TATGAATCTGGTCCTGGACGATGTCAAGGAATCCATGCGCGGTAAGCACA
CCCTGCAATTTCCACACCACGACTTTACTGACGGCCCCAGATGATGAGGG
CAACGAGAACACTCGCTCTCTGGGTCTCGTCGTGGCCCGTGGCACCATCA
TCGTCCTGATCTCGCCCGCCGACGGCAGCGAGGAGATTGCCAACCCCTTC
GTGCAACCCGAAGAGTAA back to topCoding sequence (CDS) from alignment at An01:2908736..2909253+ >CBS51388_000995-T1 ID=CBS51388_000995-T1|Name=CBS51388_000995-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1233bp|location=Sequence derived from alignment at An01:2908736..2909253+ (Aspergillus niger CBS 513.88)
ATGTCCGAAAGAGGCTCGTTCCGTGGAGGTGGCCGTGGCCGCGGCGGAGG
CTATGACCGGTCTGGCGGTCGTGGCGCCCACAGAGGTGGCGGTGCTGGTG
GCGGTGCCCACCAGCAGCAGCAGCAGGAGAAGCCCAAGAAGGAAAACATC
CTCGACCTCAACAAGTATATGGACAAGGAGGTGCGCGTCAAGTTCAATGG
CGGTCGTGAGGTTATTGGTACGCTCAAGGGATACGACCAACTTATGAATC
TGGTCCTGGACGATGTCAAGGAATCCATGCGCGATGATGAGGGCAACGAG
AACACTCGCTCTCTGGGTCTCGTCGTGGCCCGTGGCACCATCATCGTCCT
GATCTCGCCCGCCGACGGCAGCGAGGAGATTGCCAACCCCTTCGTGCAAC
CCGAAGAGTAAATGTCCGAAAGAGGCTCGTTCCGTGGAGGTGGCCGTGGC
CGCGGCGGAGGCTATGACCGGTCTGGCGGTCGTGGCGCCCACAGAGGTGG
CGGTGCTGGTGGCGGTGCCCACCAGCAGCAGCAGCAGGAGAAGCCCAAGA
AGGAAAACATCCTCGACCTCAACAAGTATATGGACAAGGAGGTGCGCGTC
AAGTTCAATGGCGGTCGTGAGGTTATTGGTACGCTCAAGGGATACGACCA
ACTTATGAATCTGGTCCTGGACGATGTCAAGGAATCCATGCGCGATGATG
AGGGCAACGAGAACACTCGCTCTCTGGGTCTCGTCGTGGCCCGTGGCACC
ATCATCGTCCTGATCTCGCCCGCCGACGGCAGCGAGGAGATTGCCAACCC
CTTCGTGCAACCCGAAGAGTAAATGTCCGAAAGAGGCTCGTTCCGTGGAG
GTGGCCGTGGCCGCGGCGGAGGCTATGACCGGTCTGGCGGTCGTGGCGCC
CACAGAGGTGGCGGTGCTGGTGGCGGTGCCCACCAGCAGCAGCAGCAGGA
GAAGCCCAAGAAGGAAAACATCCTCGACCTCAACAAGTATATGGACAAGG
AGGTGCGCGTCAAGTTCAATGGCGGTCGTGAGGTTATTGGTACGCTCAAG
GGATACGACCAACTTATGAATCTGGTCCTGGACGATGTCAAGGAATCCAT
GCGCGATGATGAGGGCAACGAGAACACTCGCTCTCTGGGTCTCGTCGTGG
CCCGTGGCACCATCATCGTCCTGATCTCGCCCGCCGACGGCAGCGAGGAG
ATTGCCAACCCCTTCGTGCAACCCGAAGAGTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000956 | nuclear-transcribed mRNA catabolic process |
| GO:0000398 | mRNA splicing, via spliceosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR010920 |
| DBxref | InterPro:IPR017132 |
| DBxref | InterPro:IPR001163 |
| DBxref | PFAM:PF01423 |
| Product | Sm-like protein lsm7 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An01 | supercontig | An01:2908736..2909253 + |
|
