|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at An01:2936429..2937277+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_001003-T1 ID=CBS51388_001003-T1|Name=CBS51388_001003-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=849bp|location=Sequence derived from alignment at An01:2936429..2937277+ (Aspergillus niger CBS 513.88)
ATGGTCTTGCTGATTGTTGGATTTTGTCGCCATCAGGTCCGTTACGCTGC
TCAGGAGATTCCGGCCGCTAAGAGCGCCCGCGCCCGGGGCTCTTACCTGC
GTGTCAGCTTCAAGAACACCCGTGAGACCGCTCAGGCCATCAACGGCATG
AAGCTGCAGCGCGCCCTTACCTTCCTCAACAACGTCACCGAAAAGGCTGA
GGCTGTCCCCATGCGTCGGTACGCTGGCAGCACCGGTCGCTGCGCTCAGG
GTGAGTGGATGTGTTTTTCTACGTTGAAGATTTTGGAAAAGAGACGGAAG
TGAAAACAACGGATCGACAAGTGAACCGACATTGGCAGAATGTTTAGGGA
TGAAGAGGCTGGATGGATACTTTTTTTTGGAGGATATGGCAAAAATCAAA
CTTTTTGGCAAACGAAGACGCTGACCGTCTTCTTTCTCTTTAGGCAAGCA
GTGGGGTGTCAGCAAGGCTCGTTGGCCCGTCAAGTCCGCCGAGTTCCTTC
TCGACCTCCTGAAGAACGCTGAGGCCAACGCCGACACCAAGGGTCTCGAC
ACCGGCAACCTCGTTGTCAAGCACATCCAGGTCAACCAGGCTCCCAAGGG
CCGCCGCCGCACCTACCGTGCTCACGGTCGTGTATGTTGAAGCCGGAATC
CGAGACATCCCTCCGTCACGAATCCCCGCAAAACTAACAATTCGATTAGA
TCAACCCCTACATGACCAACCCCTGCCACATCGAGCTCATCCTTACCGAG
GGTGAGGAGACCGTCGCCAAGGGTCCCGCTGTCAAGGAGGTCCGCCTCAG
CTCCCGCCAGCGTGGTGCTCAGCTCCGCCGTGCTCTCATTGAGGCATAA back to topCoding sequence (CDS) from alignment at An01:2936429..2937277+ >CBS51388_001003-T1 ID=CBS51388_001003-T1|Name=CBS51388_001003-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1764bp|location=Sequence derived from alignment at An01:2936429..2937277+ (Aspergillus niger CBS 513.88)
ATGGTCTTGCTGATTGTTGGATTTTGTCGCCATCAGGTCCGTTACGCTGC
TCAGGAGATTCCGGCCGCTAAGAGCGCCCGCGCCCGGGGCTCTTACCTGC
GTGTCAGCTTCAAGAACACCCGTGAGACCGCTCAGGCCATCAACGGCATG
AAGCTGCAGCGCGCCCTTACCTTCCTCAACAACGTCACCGAAAAGGCTGA
GGCTGTCCCCATGCGTCGGTACGCTGGCAGCACCGGTCGCTGCGCTCAGG
GCAAGCAGTGGGGTGTCAGCAAGGCTCGTTGGCCCGTCAAGTCCGCCGAG
TTCCTTCTCGACCTCCTGAAGAACGCTGAGGCCAACGCCGACACCAAGGG
TCTCGACACCGGCAACCTCGTTGTCAAGCACATCCAGGTCAACCAGGCTC
CCAAGGGCCGCCGCCGCACCTACCGTGCTCACGGTCGTATCAACCCCTAC
ATGACCAACCCCTGCCACATCGAGCTCATCCTTACCGAGGGTGAGGAGAC
CGTCGCCAAGGGTCCCGCTGTCAAGGAGGTCCGCCTCAGCTCCCGCCAGC
GTGGTGCTCAGCTCCGCCGTGCTCTCATTGAGGCATAAATGGTCTTGCTG
ATTGTTGGATTTTGTCGCCATCAGGTCCGTTACGCTGCTCAGGAGATTCC
GGCCGCTAAGAGCGCCCGCGCCCGGGGCTCTTACCTGCGTGTCAGCTTCA
AGAACACCCGTGAGACCGCTCAGGCCATCAACGGCATGAAGCTGCAGCGC
GCCCTTACCTTCCTCAACAACGTCACCGAAAAGGCTGAGGCTGTCCCCAT
GCGTCGGTACGCTGGCAGCACCGGTCGCTGCGCTCAGGGCAAGCAGTGGG
GTGTCAGCAAGGCTCGTTGGCCCGTCAAGTCCGCCGAGTTCCTTCTCGAC
CTCCTGAAGAACGCTGAGGCCAACGCCGACACCAAGGGTCTCGACACCGG
CAACCTCGTTGTCAAGCACATCCAGGTCAACCAGGCTCCCAAGGGCCGCC
GCCGCACCTACCGTGCTCACGGTCGTATCAACCCCTACATGACCAACCCC
TGCCACATCGAGCTCATCCTTACCGAGGGTGAGGAGACCGTCGCCAAGGG
TCCCGCTGTCAAGGAGGTCCGCCTCAGCTCCCGCCAGCGTGGTGCTCAGC
TCCGCCGTGCTCTCATTGAGGCATAAATGGTCTTGCTGATTGTTGGATTT
TGTCGCCATCAGGTCCGTTACGCTGCTCAGGAGATTCCGGCCGCTAAGAG
CGCCCGCGCCCGGGGCTCTTACCTGCGTGTCAGCTTCAAGAACACCCGTG
AGACCGCTCAGGCCATCAACGGCATGAAGCTGCAGCGCGCCCTTACCTTC
CTCAACAACGTCACCGAAAAGGCTGAGGCTGTCCCCATGCGTCGGTACGC
TGGCAGCACCGGTCGCTGCGCTCAGGGCAAGCAGTGGGGTGTCAGCAAGG
CTCGTTGGCCCGTCAAGTCCGCCGAGTTCCTTCTCGACCTCCTGAAGAAC
GCTGAGGCCAACGCCGACACCAAGGGTCTCGACACCGGCAACCTCGTTGT
CAAGCACATCCAGGTCAACCAGGCTCCCAAGGGCCGCCGCCGCACCTACC
GTGCTCACGGTCGTATCAACCCCTACATGACCAACCCCTGCCACATCGAG
CTCATCCTTACCGAGGGTGAGGAGACCGTCGCCAAGGGTCCCGCTGTCAA
GGAGGTCCGCCTCAGCTCCCGCCAGCGTGGTGCTCAGCTCCGCCGTGCTC
TCATTGAGGCATAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0015934 | large ribosomal subunit |
| GO:0005840 | ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR018260 |
| DBxref | InterPro:IPR005721 |
| DBxref | InterPro:IPR001063 |
| DBxref | InterPro:IPR036394 |
| DBxref | PFAM:PF00237 |
| Product | 60S ribosomal protein L17 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An01 | supercontig | An01:2936429..2937277 + |
|
