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Sequences
The following sequences are available for this feature:
mRNA from alignment at An01:3094519..3096202- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_001050-T1 ID=CBS51388_001050-T1|Name=CBS51388_001050-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1684bp|location=Sequence derived from alignment at An01:3094519..3096202- (Aspergillus niger CBS 513.88)
ATGCGGGGATCTGAGGCATCGGGGCCCGGTGCTCTCTTTGATGCTCCCTC
GACTCTTGCCACGTCCCTTGGAATCAATCCCACCGCTGCTTCTGAACCCC
CTCCGACCGATCCCAAACTAGTCGCCTCGAACATTGAACATGTCTTGTTG
TCCATGTCAGAAGGCAATGGCGGTCTAGTTAGCGTCAGTGGCAACTCGTC
GGGTTCTACCGGCAAGGGTATCCTGATAGGCGTCCTCTCTGCCTTTGGAT
CCGCCGCCGTTGCAGTGCTTGTACTCGCTGTTTTCTTTTTCTTCAAATAC
ACTCAGCGTGGTAGAATTATTCTCGATCGCATCGGCCGACCGGGTGAATT
CGACGATGAGCAAGCGTTTGCGCGCGAGGAGGCGGAAGCCTTGGAGACGA
TGGATGACCTCACGCGATCGGAGTATATGAGAGCGAAGGGTAAGTCACTG
GCTCTTTGTCCGCTCCTTTGGGCAAACGACGACCATGGGGTCTTGTAAGA
CATGACGTATGTGCATTTGTCGCTGATCTCTCACATAGCATTTATCGAAG
CCAATCCGCCCGAGTCCGTACAAACCGACATATCACTCTCTCAGTTCCTC
GCGATTCAAGAAAAAGGAGTATCGGCTTGGGAGTTTCAACCAGAGTTGGA
AATCGCCAATTGCTTTGTCGAAGGCCGTACGGAAATCGAGTTCTACGACT
CGGAATGCAGTGTCCAGACCAATTTGCCCGTTCCGAAACAGAATGACGTC
TATTACTGGGAGGCTAAGATCTACGACAAACCTGATAATACTCTTATCAG
TATTGGGATGACTACGAAACCGTATCCTTTGTTCAAATTACCAGGTGCGT
TCTTGGACAACTTGTTTGGGGGAGGATATGGGTTGTCCGCGGTCGCTAAT
TTTGTTTCTTATGATGTCAGGCTTCCACAAGACTTCGGTCGCATACCAGT
CCACCGGTCATAGGAGGCACAACCAGCCATTTGCACCAACACCGTACGGT
CCTCACCTTTTGCAAGGTGATGTGATCGGTGTGGGGTATCGACCACGCTC
GGGTACAATTTTCTTCACTCGCAATGGCAAGAAGCTGGAGGACGTTGTCC
ACGGTCATAAAGCGCAGAATTTCTTCCCCACTGTTGGAGCCAATGGGCCT
TGCTCCGTCCATGTGAACTTTGGTCAGATGGGCTTCGTGTTCATTGAGGC
CAACGTCAAGAAATGGGGCCTGGCCCCGATGACTGGTAGTCTGGCTCCGC
CTCCGCCTTACGGCAGCGAGCAAGGCAGCATCCTGCTAGAGTCGGGTCGG
GAGAGTGCAGCTCAGATTTCTCAACGGGTCTATCAGGATGCCAATAATGC
GCGCACCAGTTCGACTGTCCGTGTTGCGCCTTCTGCCAGTCCCGGCCCTG
TGCGATCACCCACCGATATATCCCTGGCTCAGCTTGCCCACATCCCGTCG
AACGAGGACGTAGGCGAAGGATCCAGTCGGACCAATGTCGTCGATGGAGA
GCAAGTCCCCTTGTTGCATACGAACGATCTCGACCAAGTCCCGCCTCCCG
AATATTCCAGCCCGGATGGCAGTCGGAGAGGCAGCGAGGATCTGCCCTTT
GACGAACAGCCTCCGATACCCAGCTACGACGCTGCTGTTGGCAACCGGGA
CGGTCACAGCGCGCATGCCAACGAGAATCGTTAG back to topCoding sequence (CDS) from alignment at An01:3094519..3096202- >CBS51388_001050-T1 ID=CBS51388_001050-T1|Name=CBS51388_001050-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=4527bp|location=Sequence derived from alignment at An01:3094519..3096202- (Aspergillus niger CBS 513.88)
GCTTCCACAAGACTTCGGTCGCATACCAGTCCACCGGTCATAGGAGGCAC
AACCAGCCATTTGCACCAACACCGTACGGTCCTCACCTTTTGCAAGGTGA
TGTGATCGGTGTGGGGTATCGACCACGCTCGGGTACAATTTTCTTCACTC
GCAATGGCAAGAAGCTGGAGGACGTTGTCCACGGTCATAAAGCGCAGAAT
TTCTTCCCCACTGTTGGAGCCAATGGGCCTTGCTCCGTCCATGTGAACTT
TGGTCAGATGGGCTTCGTGTTCATTGAGGCCAACGTCAAGAAATGGGGCC
TGGCCCCGATGACTGGTAGTCTGGCTCCGCCTCCGCCTTACGGCAGCGAG
CAAGGCAGCATCCTGCTAGAGTCGGGTCGGGAGAGTGCAGCTCAGATTTC
TCAACGGGTCTATCAGGATGCCAATAATGCGCGCACCAGTTCGACTGTCC
GTGTTGCGCCTTCTGCCAGTCCCGGCCCTGTGCGATCACCCACCGATATA
TCCCTGGCTCAGCTTGCCCACATCCCGTCGAACGAGGACGTAGGCGAAGG
ATCCAGTCGGACCAATGTCGTCGATGGAGAGCAAGTCCCCTTGTTGCATA
CGAACGATCTCGACCAAGTCCCGCCTCCCGAATATTCCAGCCCGGATGGC
AGTCGGAGAGGCAGCGAGGATCTGCCCTTTGACGAACAGCCTCCGATACC
CAGCTACGACGCTGCTGTTGGCAACCGGGACGGTCACAGCGCGCATGCCA
ACGAGAATCGTTAGCATTTATCGAAGCCAATCCGCCCGAGTCCGTACAAA
CCGACATATCACTCTCTCAGTTCCTCGCGATTCAAGAAAAAGGAGTATCG
GCTTGGGAGTTTCAACCAGAGTTGGAAATCGCCAATTGCTTTGTCGAAGG
CCGTACGGAAATCGAGTTCTACGACTCGGAATGCAGTGTCCAGACCAATT
TGCCCGTTCCGAAACAGAATGACGTCTATTACTGGGAGGCTAAGATCTAC
GACAAACCTGATAATACTCTTATCAGTATTGGGATGACTACGAAACCGTA
TCCTTTGTTCAAATTACCAGATGCGGGGATCTGAGGCATCGGGGCCCGGT
GCTCTCTTTGATGCTCCCTCGACTCTTGCCACGTCCCTTGGAATCAATCC
CACCGCTGCTTCTGAACCCCCTCCGACCGATCCCAAACTAGTCGCCTCGA
ACATTGAACATGTCTTGTTGTCCATGTCAGAAGGCAATGGCGGTCTAGTT
AGCGTCAGTGGCAACTCGTCGGGTTCTACCGGCAAGGGTATCCTGATAGG
CGTCCTCTCTGCCTTTGGATCCGCCGCCGTTGCAGTGCTTGTACTCGCTG
TTTTCTTTTTCTTCAAATACACTCAGCGTGGTAGAATTATTCTCGATCGC
ATCGGCCGACCGGGTGAATTCGACGATGAGCAAGCGTTTGCGCGCGAGGA
GGCGGAAGCCTTGGAGACGATGGATGACCTCACGCGATCGGAGTATATGA
GAGCGAAGGGCTTCCACAAGACTTCGGTCGCATACCAGTCCACCGGTCAT
AGGAGGCACAACCAGCCATTTGCACCAACACCGTACGGTCCTCACCTTTT
GCAAGGTGATGTGATCGGTGTGGGGTATCGACCACGCTCGGGTACAATTT
TCTTCACTCGCAATGGCAAGAAGCTGGAGGACGTTGTCCACGGTCATAAA
GCGCAGAATTTCTTCCCCACTGTTGGAGCCAATGGGCCTTGCTCCGTCCA
TGTGAACTTTGGTCAGATGGGCTTCGTGTTCATTGAGGCCAACGTCAAGA
AATGGGGCCTGGCCCCGATGACTGGTAGTCTGGCTCCGCCTCCGCCTTAC
GGCAGCGAGCAAGGCAGCATCCTGCTAGAGTCGGGTCGGGAGAGTGCAGC
TCAGATTTCTCAACGGGTCTATCAGGATGCCAATAATGCGCGCACCAGTT
CGACTGTCCGTGTTGCGCCTTCTGCCAGTCCCGGCCCTGTGCGATCACCC
ACCGATATATCCCTGGCTCAGCTTGCCCACATCCCGTCGAACGAGGACGT
AGGCGAAGGATCCAGTCGGACCAATGTCGTCGATGGAGAGCAAGTCCCCT
TGTTGCATACGAACGATCTCGACCAAGTCCCGCCTCCCGAATATTCCAGC
CCGGATGGCAGTCGGAGAGGCAGCGAGGATCTGCCCTTTGACGAACAGCC
TCCGATACCCAGCTACGACGCTGCTGTTGGCAACCGGGACGGTCACAGCG
CGCATGCCAACGAGAATCGTTAGCATTTATCGAAGCCAATCCGCCCGAGT
CCGTACAAACCGACATATCACTCTCTCAGTTCCTCGCGATTCAAGAAAAA
GGAGTATCGGCTTGGGAGTTTCAACCAGAGTTGGAAATCGCCAATTGCTT
TGTCGAAGGCCGTACGGAAATCGAGTTCTACGACTCGGAATGCAGTGTCC
AGACCAATTTGCCCGTTCCGAAACAGAATGACGTCTATTACTGGGAGGCT
AAGATCTACGACAAACCTGATAATACTCTTATCAGTATTGGGATGACTAC
GAAACCGTATCCTTTGTTCAAATTACCAGATGCGGGGATCTGAGGCATCG
GGGCCCGGTGCTCTCTTTGATGCTCCCTCGACTCTTGCCACGTCCCTTGG
AATCAATCCCACCGCTGCTTCTGAACCCCCTCCGACCGATCCCAAACTAG
TCGCCTCGAACATTGAACATGTCTTGTTGTCCATGTCAGAAGGCAATGGC
GGTCTAGTTAGCGTCAGTGGCAACTCGTCGGGTTCTACCGGCAAGGGTAT
CCTGATAGGCGTCCTCTCTGCCTTTGGATCCGCCGCCGTTGCAGTGCTTG
TACTCGCTGTTTTCTTTTTCTTCAAATACACTCAGCGTGGTAGAATTATT
CTCGATCGCATCGGCCGACCGGGTGAATTCGACGATGAGCAAGCGTTTGC
GCGCGAGGAGGCGGAAGCCTTGGAGACGATGGATGACCTCACGCGATCGG
AGTATATGAGAGCGAAGGGCTTCCACAAGACTTCGGTCGCATACCAGTCC
ACCGGTCATAGGAGGCACAACCAGCCATTTGCACCAACACCGTACGGTCC
TCACCTTTTGCAAGGTGATGTGATCGGTGTGGGGTATCGACCACGCTCGG
GTACAATTTTCTTCACTCGCAATGGCAAGAAGCTGGAGGACGTTGTCCAC
GGTCATAAAGCGCAGAATTTCTTCCCCACTGTTGGAGCCAATGGGCCTTG
CTCCGTCCATGTGAACTTTGGTCAGATGGGCTTCGTGTTCATTGAGGCCA
ACGTCAAGAAATGGGGCCTGGCCCCGATGACTGGTAGTCTGGCTCCGCCT
CCGCCTTACGGCAGCGAGCAAGGCAGCATCCTGCTAGAGTCGGGTCGGGA
GAGTGCAGCTCAGATTTCTCAACGGGTCTATCAGGATGCCAATAATGCGC
GCACCAGTTCGACTGTCCGTGTTGCGCCTTCTGCCAGTCCCGGCCCTGTG
CGATCACCCACCGATATATCCCTGGCTCAGCTTGCCCACATCCCGTCGAA
CGAGGACGTAGGCGAAGGATCCAGTCGGACCAATGTCGTCGATGGAGAGC
AAGTCCCCTTGTTGCATACGAACGATCTCGACCAAGTCCCGCCTCCCGAA
TATTCCAGCCCGGATGGCAGTCGGAGAGGCAGCGAGGATCTGCCCTTTGA
CGAACAGCCTCCGATACCCAGCTACGACGCTGCTGTTGGCAACCGGGACG
GTCACAGCGCGCATGCCAACGAGAATCGTTAGCATTTATCGAAGCCAATC
CGCCCGAGTCCGTACAAACCGACATATCACTCTCTCAGTTCCTCGCGATT
CAAGAAAAAGGAGTATCGGCTTGGGAGTTTCAACCAGAGTTGGAAATCGC
CAATTGCTTTGTCGAAGGCCGTACGGAAATCGAGTTCTACGACTCGGAAT
GCAGTGTCCAGACCAATTTGCCCGTTCCGAAACAGAATGACGTCTATTAC
TGGGAGGCTAAGATCTACGACAAACCTGATAATACTCTTATCAGTATTGG
GATGACTACGAAACCGTATCCTTTGTTCAAATTACCAGATGCGGGGATCT
GAGGCATCGGGGCCCGGTGCTCTCTTTGATGCTCCCTCGACTCTTGCCAC
GTCCCTTGGAATCAATCCCACCGCTGCTTCTGAACCCCCTCCGACCGATC
CCAAACTAGTCGCCTCGAACATTGAACATGTCTTGTTGTCCATGTCAGAA
GGCAATGGCGGTCTAGTTAGCGTCAGTGGCAACTCGTCGGGTTCTACCGG
CAAGGGTATCCTGATAGGCGTCCTCTCTGCCTTTGGATCCGCCGCCGTTG
CAGTGCTTGTACTCGCTGTTTTCTTTTTCTTCAAATACACTCAGCGTGGT
AGAATTATTCTCGATCGCATCGGCCGACCGGGTGAATTCGACGATGAGCA
AGCGTTTGCGCGCGAGGAGGCGGAAGCCTTGGAGACGATGGATGACCTCA
CGCGATCGGAGTATATGAGAGCGAAGG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR013320 |
| DBxref | InterPro:IPR035780 |
| DBxref | InterPro:IPR001870 |
| DBxref | InterPro:IPR043136 |
| DBxref | InterPro:IPR003877 |
| DBxref | PFAM:PF00622 |
| Product | sorting of cargo proteins at the multivesicular body |
| Product | Rsp5p-dependent ubiquitination |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An01 | supercontig | An01:3094519..3096202 - |
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